Wall clock time and date at job start Mon Mar 30 2020 01:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99681 * 2 1 4 4 H 1.48502 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47263 * 300.00212 * 3 2 1 6 6 H 1.48498 * 109.47263 * 60.00254 * 3 2 1 7 7 C 1.38947 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99543 * 196.83256 * 7 2 1 9 9 N 1.37098 * 120.00098 * 16.83406 * 7 2 1 10 10 C 1.34768 * 119.99909 * 41.91395 * 9 7 2 11 11 O 1.21290 * 120.00461 * 5.47071 * 10 9 7 12 12 C 1.50703 * 119.99918 * 185.47800 * 10 9 7 13 13 C 1.53178 * 109.54566 * 165.33029 * 12 10 9 14 14 C 1.53087 * 109.16592 * 176.84828 * 13 12 10 15 15 O 1.42911 * 109.41188 * 302.38952 * 14 13 12 16 16 C 1.42902 * 114.09800 * 61.15693 * 15 14 13 17 17 C 1.53090 * 109.41436 * 298.84250 * 16 15 14 18 18 C 1.46502 * 119.99831 * 221.90765 * 9 7 2 19 19 C 1.54261 * 110.03164 * 62.50905 * 18 9 7 20 20 C 1.54961 * 104.16258 * 217.13671 * 19 18 9 21 21 C 1.54889 * 102.77648 * 37.88828 * 20 19 18 22 22 C 1.53881 * 110.03294 * 305.29272 * 18 9 7 23 23 H 0.97001 * 120.00148 * 4.96409 * 1 2 3 24 24 H 1.09000 * 109.61472 * 45.10307 * 12 10 9 25 25 H 1.09006 * 109.51723 * 296.75128 * 13 12 10 26 26 H 1.08994 * 109.52464 * 56.93819 * 13 12 10 27 27 H 1.08999 * 109.48421 * 62.36386 * 14 13 12 28 28 H 1.08992 * 109.48389 * 182.40811 * 14 13 12 29 29 H 1.09006 * 109.47848 * 178.85912 * 16 15 14 30 30 H 1.09003 * 109.49127 * 58.83206 * 16 15 14 31 31 H 1.09000 * 109.52352 * 297.70423 * 17 16 15 32 32 H 1.08999 * 109.52204 * 177.51890 * 17 16 15 33 33 H 1.08996 * 110.01142 * 183.90301 * 18 9 7 34 34 H 1.09000 * 110.48939 * 335.78206 * 19 18 9 35 35 H 1.09002 * 110.48905 * 98.42569 * 19 18 9 36 36 H 1.09005 * 110.71809 * 279.57689 * 20 19 18 37 37 H 1.08995 * 110.92705 * 156.29574 * 20 19 18 38 38 H 1.09007 * 110.48677 * 203.40700 * 21 20 19 39 39 H 1.08997 * 110.60197 * 80.82022 * 21 20 19 40 40 H 1.08996 * 110.02793 * 238.56878 * 22 18 9 41 41 H 1.08996 * 110.02927 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0541 -1.2234 0.2703 9 7 1.3674 -2.3650 -0.3449 10 6 0.5116 -2.3792 -1.3859 11 8 0.3834 -1.3922 -2.0791 12 6 -0.2862 -3.6213 -1.6887 13 6 -1.4225 -3.2773 -2.6566 14 6 -2.1784 -4.5580 -3.0197 15 8 -1.2687 -5.5010 -3.5903 16 6 -0.2116 -5.8959 -2.7135 17 6 0.6233 -4.6688 -2.3381 18 6 1.6124 -3.5911 0.4187 19 6 1.1590 -3.4023 1.8811 20 6 2.2167 -4.1753 2.7087 21 6 3.5321 -3.8776 1.9472 22 6 3.1206 -3.8936 0.4605 23 1 -0.4850 0.8369 -0.0727 24 1 -0.7030 -4.0227 -0.7649 25 1 -2.1056 -2.5735 -2.1809 26 1 -1.0084 -2.8301 -3.5603 27 1 -2.6263 -4.9829 -2.1214 28 1 -2.9614 -4.3258 -3.7416 29 1 0.4223 -6.6274 -3.2148 30 1 -0.6336 -6.3383 -1.8112 31 1 1.0788 -4.2497 -3.2354 32 1 1.4033 -4.9603 -1.6348 33 1 1.0766 -4.4255 -0.0336 34 1 1.1635 -2.3456 2.1485 35 1 0.1681 -3.8306 2.0316 36 1 2.0024 -5.2441 2.7063 37 1 2.2665 -3.7952 3.7290 38 1 4.2722 -4.6527 2.1465 39 1 3.9226 -2.8984 2.2244 40 1 3.3165 -4.8753 0.0294 41 1 3.6701 -3.1284 -0.0877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078003110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:00 Heat of formation + Delta-G solvation = -106.452679 kcal Electronic energy + Delta-G solvation = -22221.457896 eV Core-core repulsion = 19100.138081 eV Total energy + Delta-G solvation = -3121.319814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.21481 -39.60054 -38.24379 -35.28445 -34.59083 -33.19589 -31.99224 -29.45080 -28.42588 -27.60936 -25.60829 -24.44819 -22.16615 -21.37898 -21.19376 -20.48531 -18.41434 -17.68547 -17.09482 -16.93974 -16.72883 -16.01605 -15.83494 -15.72353 -15.46565 -15.09305 -14.44660 -14.25549 -14.09330 -13.87739 -13.35907 -13.16095 -12.90060 -12.69213 -12.58989 -12.31101 -12.23445 -12.19270 -12.04856 -11.82183 -11.77127 -11.56661 -11.37092 -11.33280 -11.21893 -10.76325 -10.58009 -9.86570 -9.02911 -8.16329 -5.92223 1.33281 1.39954 1.47318 2.29202 2.49426 2.97151 3.16182 3.28409 3.82555 3.85600 3.88781 3.91569 4.02881 4.09447 4.26939 4.33129 4.38806 4.53539 4.61708 4.68178 4.70988 4.78083 4.80761 4.83476 4.85932 4.92753 4.96441 5.11406 5.14034 5.20209 5.23890 5.30838 5.35987 5.44325 5.58508 5.59648 5.68670 6.25184 6.27656 7.09038 7.29410 7.77856 8.43808 8.90922 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.008715 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.759196 B = 3212.113193 C = 4460.207471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.258 1.258 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.461 5.461 10 C 0.471 3.529 11 O -0.596 6.596 12 C -0.096 4.096 13 C -0.127 4.127 14 C 0.072 3.928 15 O -0.399 6.399 16 C 0.065 3.935 17 C -0.140 4.140 18 C 0.117 3.883 19 C -0.129 4.129 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.128 4.128 23 H 0.254 0.746 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 -14.750 2.136 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.182 1.182 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.182 5.182 10 C 0.260 3.740 11 O -0.477 6.477 12 C -0.118 4.118 13 C -0.166 4.166 14 C -0.005 4.005 15 O -0.318 6.318 16 C -0.011 4.011 17 C -0.178 4.178 18 C 0.013 3.987 19 C -0.167 4.167 20 C -0.147 4.147 21 C -0.152 4.152 22 C -0.167 4.167 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.966 -14.209 1.685 14.341 hybrid contribution 0.177 2.004 0.173 2.019 sum 1.142 -12.205 1.858 12.398 Atomic orbital electron populations 1.69966 1.07649 1.27295 1.46001 1.25907 0.95440 1.02207 0.95384 0.85452 0.79516 0.79946 0.76802 1.18197 1.22500 1.20308 1.19091 0.93750 0.85487 1.47763 0.90532 1.43632 1.40970 1.08280 1.25342 1.20675 0.83301 0.89100 0.80905 1.90449 1.67978 1.38144 1.51179 1.21208 0.96454 0.94629 0.99523 1.21874 0.97148 0.98767 0.98777 1.22624 0.91257 0.86913 0.99698 1.87872 1.40291 1.61429 1.42224 1.22757 0.88519 0.94687 0.95124 1.22257 0.98684 0.95954 1.00919 1.22161 0.96591 0.87644 0.92266 1.22628 0.98656 1.00142 0.95289 1.22413 0.93808 1.00440 0.98055 1.22253 0.97783 1.01150 0.93984 1.22432 0.94988 1.01356 0.97880 0.93696 0.89476 0.92826 0.93348 0.91332 0.87399 0.86355 0.90956 0.93009 0.88935 0.88719 0.93918 0.92360 0.89299 0.91485 0.89490 0.93592 0.89582 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.78 11.59 21.66 0.25 -53.53 16 2 C 0.02 0.89 4.44 84.93 0.38 1.27 16 3 Si 0.96 46.78 29.59 68.60 2.03 48.81 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.33 -18.33 7.56 84.04 0.64 -17.70 16 8 H 0.08 4.11 6.89 -2.91 -0.02 4.09 16 9 N -0.46 -22.66 2.48 -609.39 -1.51 -24.17 16 10 C 0.47 24.22 6.06 87.66 0.53 24.75 16 11 O -0.60 -36.94 13.74 -3.06 -0.04 -36.98 16 12 C -0.10 -3.70 1.74 -11.42 -0.02 -3.72 16 13 C -0.13 -4.79 4.89 30.68 0.15 -4.64 16 14 C 0.07 1.97 6.84 72.01 0.49 2.46 16 15 O -0.40 -11.28 10.77 -148.98 -1.60 -12.88 16 16 C 0.07 1.53 6.84 72.01 0.49 2.02 16 17 C -0.14 -4.28 5.05 30.68 0.15 -4.12 16 18 C 0.12 4.31 2.50 45.72 0.11 4.42 16 19 C -0.13 -4.58 6.43 31.69 0.20 -4.37 16 20 C -0.11 -2.85 6.91 31.91 0.22 -2.63 16 21 C -0.11 -3.09 6.83 31.67 0.22 -2.88 16 22 C -0.13 -4.04 6.18 31.32 0.19 -3.85 16 23 H 0.25 15.32 8.32 -92.71 -0.77 14.55 16 24 H 0.09 3.10 7.31 -2.39 -0.02 3.08 16 25 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.05 2.06 7.84 -2.39 -0.02 2.05 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 2.52 5.95 -2.39 -0.01 2.51 16 33 H 0.10 3.00 4.23 -2.39 -0.01 2.99 16 34 H 0.04 1.92 7.22 -2.39 -0.02 1.90 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.05 1.74 6.66 -2.39 -0.02 1.73 16 Total: -1.00 -74.39 313.87 3.89 -70.50 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 1.00 Total: 17.23 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 3.76 Total: -8.98 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -1.26 Total: -77.70 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -1.65 Total: -49.87 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -74.39 3.89 -70.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.953 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds