Wall clock time and date at job start Mon Mar 30 2020 01:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 119.99985 * 2 1 4 4 H 1.48503 * 109.47468 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47208 * 300.00216 * 3 2 1 6 6 H 1.48508 * 109.47075 * 59.99892 * 3 2 1 7 7 C 1.38956 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99507 * 199.59433 * 7 2 1 9 9 N 1.37087 * 120.00127 * 19.59153 * 7 2 1 10 10 C 1.34775 * 120.00024 * 42.37625 * 9 7 2 11 11 O 1.21284 * 120.00123 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99598 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.46819 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.27649 * 304.36591 * 13 12 10 15 15 C 1.54941 * 110.39366 * 182.21661 * 13 12 10 16 16 C 1.55315 * 100.94252 * 204.59616 * 15 13 12 17 17 C 1.54383 * 102.25088 * 34.13326 * 16 15 13 18 18 O 1.43242 * 107.58607 * 338.64427 * 17 16 15 19 19 C 1.46504 * 120.00023 * 222.37583 * 9 7 2 20 20 C 1.54263 * 110.03348 * 60.28404 * 19 9 7 21 21 C 1.54963 * 104.16034 * 217.14055 * 20 19 9 22 22 C 1.54886 * 102.78012 * 37.88906 * 21 20 19 23 23 C 1.53880 * 110.02931 * 303.06920 * 19 9 7 24 24 H 0.97000 * 120.00337 * 354.88663 * 1 2 3 25 25 H 1.09001 * 109.47413 * 60.00221 * 12 10 9 26 26 H 1.08999 * 109.47364 * 299.99567 * 12 10 9 27 27 H 1.09001 * 111.13050 * 86.67958 * 15 13 12 28 28 H 1.09004 * 111.12793 * 322.51336 * 15 13 12 29 29 H 1.08996 * 110.84559 * 275.94248 * 16 15 13 30 30 H 1.08998 * 110.84398 * 152.32343 * 16 15 13 31 31 H 1.08996 * 109.83121 * 98.15417 * 17 16 15 32 32 H 1.08996 * 109.82600 * 219.04134 * 17 16 15 33 33 H 1.08994 * 110.01630 * 181.67878 * 19 9 7 34 34 H 1.09000 * 110.48362 * 335.78514 * 20 19 9 35 35 H 1.08997 * 110.48957 * 98.42602 * 20 19 9 36 36 H 1.08999 * 110.71734 * 279.57015 * 21 20 19 37 37 H 1.09004 * 110.76504 * 156.22506 * 21 20 19 38 38 H 1.09000 * 110.48638 * 203.41049 * 22 21 20 39 39 H 1.08997 * 110.48593 * 80.76223 * 22 21 20 40 40 H 1.09002 * 110.03321 * 238.56756 * 23 19 9 41 41 H 1.09001 * 110.03085 * 359.94868 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0419 -1.2306 0.3131 9 7 1.3830 -2.3561 -0.3991 10 6 0.5786 -2.3468 -1.4805 11 8 0.4082 -1.3186 -2.1007 12 6 -0.1090 -3.6142 -1.9190 13 6 -0.9563 -3.3311 -3.1611 14 1 -1.6585 -2.5214 -2.9629 15 6 -1.7173 -4.6081 -3.5980 16 6 -1.9397 -4.3169 -5.1073 17 6 -0.6603 -3.5387 -5.4828 18 8 -0.1125 -2.9978 -4.2748 19 6 1.5884 -3.5980 0.3504 20 6 1.1160 -3.4199 1.8080 21 6 2.1429 -4.2280 2.6408 22 6 3.4767 -3.9490 1.9045 23 6 3.0887 -3.9347 0.4115 24 1 -0.4851 0.8367 0.0749 25 1 -0.7515 -3.9755 -1.1160 26 1 0.6394 -4.3710 -2.1540 27 1 -2.6673 -4.6989 -3.0714 28 1 -1.1048 -5.4985 -3.4558 29 1 -2.8264 -3.7009 -5.2569 30 1 -2.0101 -5.2447 -5.6750 31 1 0.0600 -4.2129 -5.9460 32 1 -0.9076 -2.7315 -6.1722 33 1 1.0416 -4.4138 -0.1223 34 1 1.1396 -2.3674 2.0907 35 1 0.1135 -3.8280 1.9368 36 1 1.9050 -5.2915 2.6196 37 1 2.1836 -3.8606 3.6663 38 1 4.1960 -4.7432 2.1040 39 1 3.8820 -2.9821 2.2026 40 1 3.2698 -4.9144 -0.0308 41 1 3.6637 -3.1745 -0.1173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078208236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:07 Heat of formation + Delta-G solvation = -80.994627 kcal Electronic energy + Delta-G solvation = -21738.329435 eV Core-core repulsion = 18618.113564 eV Total energy + Delta-G solvation = -3120.215870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.27456 -38.38706 -36.46060 -33.16578 -31.99231 -31.58271 -30.70352 -27.99807 -26.80114 -26.48746 -24.08304 -21.54203 -21.01634 -20.02855 -19.67616 -18.81026 -16.58771 -16.12537 -15.79770 -15.46078 -14.84949 -14.54290 -14.31364 -13.98129 -13.56681 -13.26000 -12.86435 -12.75102 -12.63901 -11.81240 -11.65121 -11.46028 -11.24328 -11.01488 -10.97556 -10.72026 -10.68260 -10.57897 -10.54029 -10.45199 -10.39405 -10.26537 -10.08732 -9.95083 -9.69646 -8.95778 -8.59618 -7.79543 -6.88384 -5.96501 -3.66189 3.37908 3.48690 3.50586 4.23085 4.35859 4.58245 4.70729 4.88975 5.06899 5.22021 5.27816 5.31542 5.40439 5.50857 5.56226 5.60158 5.75847 5.87607 5.91520 5.98555 5.99823 6.01386 6.14461 6.18493 6.20608 6.21484 6.32096 6.34819 6.41968 6.51098 6.57193 6.67929 6.69031 6.88734 7.04989 7.28179 7.60966 7.78871 8.44769 9.24991 9.39593 9.87657 10.53920 11.13471 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.007635 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.311377 B = 3666.336315 C = 4934.787497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.289 1.289 7 C -0.338 4.338 8 H 0.075 0.925 9 N -0.455 5.455 10 C 0.479 3.521 11 O -0.521 6.521 12 C -0.135 4.135 13 C 0.105 3.895 14 H 0.075 0.925 15 C -0.155 4.155 16 C -0.155 4.155 17 C 0.048 3.952 18 O -0.359 6.359 19 C 0.131 3.869 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.131 4.131 24 H 0.260 0.740 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 -11.679 -1.856 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.215 1.215 7 C -0.465 4.465 8 H 0.093 0.907 9 N -0.178 5.178 10 C 0.265 3.735 11 O -0.398 6.398 12 C -0.176 4.176 13 C 0.047 3.953 14 H 0.093 0.907 15 C -0.192 4.192 16 C -0.193 4.193 17 C -0.030 4.030 18 O -0.278 6.278 19 C 0.026 3.974 20 C -0.164 4.164 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.519 -10.884 -2.256 11.219 hybrid contribution 0.080 0.570 0.066 0.580 sum -1.439 -10.314 -2.190 10.642 Atomic orbital electron populations 1.69838 1.06472 1.26836 1.43723 1.25153 0.94698 0.99075 0.94773 0.86266 0.79900 0.83281 0.77240 1.19758 1.20870 1.21527 1.18807 0.95011 0.84295 1.48425 0.90694 1.43396 1.44693 1.06930 1.22808 1.19681 0.83446 0.88825 0.81516 1.90543 1.61997 1.33089 1.54145 1.21817 0.99635 0.99535 0.96616 1.22654 0.91400 0.94542 0.86656 0.90687 1.23369 1.01249 0.99162 0.95467 1.23097 0.98869 1.00691 0.96610 1.23052 0.94076 0.96670 0.89153 1.88628 1.48239 1.76393 1.14500 1.21648 0.94343 0.88849 0.92580 1.22671 0.96687 1.02156 0.94880 1.22453 0.95990 0.99098 0.98522 1.22256 0.96729 1.00812 0.95670 1.22460 0.97731 1.00510 0.96272 0.93034 0.89871 0.90549 0.90196 0.90581 0.90801 0.90597 0.92113 0.92116 0.91722 0.89150 0.93143 0.92591 0.92428 0.92996 0.91625 0.93072 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.01 11.66 55.50 0.65 -24.37 16 2 C 0.07 2.08 4.34 -17.47 -0.08 2.00 16 3 Si 0.91 22.61 29.60 -169.99 -5.03 17.58 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.34 -9.31 7.49 -14.94 -0.11 -9.42 16 8 H 0.08 2.02 7.04 -52.49 -0.37 1.65 16 9 N -0.46 -11.41 2.46 -106.54 -0.26 -11.67 16 10 C 0.48 12.44 6.88 -10.98 -0.08 12.37 16 11 O -0.52 -15.92 13.16 -6.33 -0.08 -16.01 16 12 C -0.14 -2.69 3.77 -27.88 -0.11 -2.79 16 13 C 0.11 1.98 2.92 -25.71 -0.07 1.90 16 14 H 0.08 1.59 8.00 -51.93 -0.42 1.17 16 15 C -0.15 -2.08 6.57 -24.48 -0.16 -2.24 16 16 C -0.16 -1.88 7.02 -24.78 -0.17 -2.05 16 17 C 0.05 0.71 7.79 37.88 0.30 1.01 16 18 O -0.36 -7.39 10.41 -47.11 -0.49 -7.88 16 19 C 0.13 2.61 3.20 -66.81 -0.21 2.39 16 20 C -0.13 -2.37 6.42 -25.03 -0.16 -2.53 16 21 C -0.12 -1.86 6.91 -24.70 -0.17 -2.03 16 22 C -0.12 -1.83 6.83 -25.07 -0.17 -2.00 16 23 C -0.13 -2.33 6.19 -25.61 -0.16 -2.48 16 24 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 25 H 0.08 1.49 7.83 -51.93 -0.41 1.08 16 26 H 0.08 1.38 7.76 -51.93 -0.40 0.98 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.16 5.83 -51.93 -0.30 0.86 16 34 H 0.09 2.04 7.13 -51.93 -0.37 1.67 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.52 6.81 -51.93 -0.35 1.17 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -33.69 321.27 -8.56 -42.25 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.82 Total: 1.11 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -1.36 Total: -5.87 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.38 Total: -36.04 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.57 Total: -23.88 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.69 -8.56 -42.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.746 kcal (2) G-P(sol) polarization free energy of solvation -33.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds