Wall clock time and date at job start Mon Mar 30 2020 01:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 119.99985 * 2 1 4 4 H 1.48503 * 109.47468 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47208 * 300.00216 * 3 2 1 6 6 H 1.48508 * 109.47075 * 59.99892 * 3 2 1 7 7 C 1.38956 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99507 * 199.59433 * 7 2 1 9 9 N 1.37087 * 120.00127 * 19.59153 * 7 2 1 10 10 C 1.34775 * 120.00024 * 42.37625 * 9 7 2 11 11 O 1.21284 * 120.00123 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99598 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.46819 * 179.97438 * 12 10 9 14 14 H 1.09003 * 110.27649 * 304.36591 * 13 12 10 15 15 C 1.54941 * 110.39366 * 182.21661 * 13 12 10 16 16 C 1.55315 * 100.94252 * 204.59616 * 15 13 12 17 17 C 1.54383 * 102.25088 * 34.13326 * 16 15 13 18 18 O 1.43242 * 107.58607 * 338.64427 * 17 16 15 19 19 C 1.46504 * 120.00023 * 222.37583 * 9 7 2 20 20 C 1.54263 * 110.03348 * 60.28404 * 19 9 7 21 21 C 1.54963 * 104.16034 * 217.14055 * 20 19 9 22 22 C 1.54886 * 102.78012 * 37.88906 * 21 20 19 23 23 C 1.53880 * 110.02931 * 303.06920 * 19 9 7 24 24 H 0.97000 * 120.00337 * 354.88663 * 1 2 3 25 25 H 1.09001 * 109.47413 * 60.00221 * 12 10 9 26 26 H 1.08999 * 109.47364 * 299.99567 * 12 10 9 27 27 H 1.09001 * 111.13050 * 86.67958 * 15 13 12 28 28 H 1.09004 * 111.12793 * 322.51336 * 15 13 12 29 29 H 1.08996 * 110.84559 * 275.94248 * 16 15 13 30 30 H 1.08998 * 110.84398 * 152.32343 * 16 15 13 31 31 H 1.08996 * 109.83121 * 98.15417 * 17 16 15 32 32 H 1.08996 * 109.82600 * 219.04134 * 17 16 15 33 33 H 1.08994 * 110.01630 * 181.67878 * 19 9 7 34 34 H 1.09000 * 110.48362 * 335.78514 * 20 19 9 35 35 H 1.08997 * 110.48957 * 98.42602 * 20 19 9 36 36 H 1.08999 * 110.71734 * 279.57015 * 21 20 19 37 37 H 1.09004 * 110.76504 * 156.22506 * 21 20 19 38 38 H 1.09000 * 110.48638 * 203.41049 * 22 21 20 39 39 H 1.08997 * 110.48593 * 80.76223 * 22 21 20 40 40 H 1.09002 * 110.03321 * 238.56756 * 23 19 9 41 41 H 1.09001 * 110.03085 * 359.94868 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0419 -1.2306 0.3131 9 7 1.3830 -2.3561 -0.3991 10 6 0.5786 -2.3468 -1.4805 11 8 0.4082 -1.3186 -2.1007 12 6 -0.1090 -3.6142 -1.9190 13 6 -0.9563 -3.3311 -3.1611 14 1 -1.6585 -2.5214 -2.9629 15 6 -1.7173 -4.6081 -3.5980 16 6 -1.9397 -4.3169 -5.1073 17 6 -0.6603 -3.5387 -5.4828 18 8 -0.1125 -2.9978 -4.2748 19 6 1.5884 -3.5980 0.3504 20 6 1.1160 -3.4199 1.8080 21 6 2.1429 -4.2280 2.6408 22 6 3.4767 -3.9490 1.9045 23 6 3.0887 -3.9347 0.4115 24 1 -0.4851 0.8367 0.0749 25 1 -0.7515 -3.9755 -1.1160 26 1 0.6394 -4.3710 -2.1540 27 1 -2.6673 -4.6989 -3.0714 28 1 -1.1048 -5.4985 -3.4558 29 1 -2.8264 -3.7009 -5.2569 30 1 -2.0101 -5.2447 -5.6750 31 1 0.0600 -4.2129 -5.9460 32 1 -0.9076 -2.7315 -6.1722 33 1 1.0416 -4.4138 -0.1223 34 1 1.1396 -2.3674 2.0907 35 1 0.1135 -3.8280 1.9368 36 1 1.9050 -5.2915 2.6196 37 1 2.1836 -3.8606 3.6663 38 1 4.1960 -4.7432 2.1040 39 1 3.8820 -2.9821 2.2026 40 1 3.2698 -4.9144 -0.0308 41 1 3.6637 -3.1745 -0.1173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078208236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:06 Heat of formation + Delta-G solvation = -102.248913 kcal Electronic energy + Delta-G solvation = -21739.251090 eV Core-core repulsion = 18618.113564 eV Total energy + Delta-G solvation = -3121.137525 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.83590 -39.90942 -38.15471 -35.11436 -33.70093 -33.05181 -32.25210 -29.40499 -28.45789 -27.95345 -25.93306 -22.82368 -22.33810 -21.34570 -21.29457 -20.62755 -18.18400 -17.74839 -17.54125 -16.93167 -16.44354 -16.15460 -15.87518 -15.55090 -15.21450 -14.91523 -14.41439 -14.11566 -14.00811 -13.47685 -13.26672 -13.05430 -12.88391 -12.57396 -12.44985 -12.41999 -12.27608 -12.05559 -11.99880 -11.88607 -11.80172 -11.74142 -11.64551 -11.32430 -11.26577 -10.69292 -10.35961 -9.84028 -8.93409 -8.13378 -5.83997 1.33116 1.42112 1.48306 2.32829 2.59954 3.00071 3.24785 3.31898 3.63035 3.85798 3.94047 3.99501 4.04760 4.13419 4.24900 4.36744 4.41784 4.59042 4.63482 4.70251 4.73713 4.83257 4.85724 4.87341 4.90471 4.93766 4.98236 5.03910 5.12188 5.17030 5.22418 5.32504 5.33069 5.48320 5.60218 5.62889 5.73115 6.29264 6.32632 7.14615 7.37560 7.85472 8.53882 8.96871 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.007635 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.311377 B = 3666.336315 C = 4934.787497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.021 3.979 3 Si 0.958 3.042 4 H -0.260 1.260 5 H -0.301 1.301 6 H -0.274 1.274 7 C -0.340 4.340 8 H 0.073 0.927 9 N -0.467 5.467 10 C 0.458 3.542 11 O -0.581 6.581 12 C -0.123 4.123 13 C 0.098 3.902 14 H 0.034 0.966 15 C -0.140 4.140 16 C -0.144 4.144 17 C 0.034 3.966 18 O -0.404 6.404 19 C 0.121 3.879 20 C -0.125 4.125 21 C -0.109 4.109 22 C -0.114 4.114 23 C -0.128 4.128 24 H 0.254 0.746 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 -15.150 -1.537 15.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.185 4.185 3 Si 0.784 3.216 4 H -0.184 1.184 5 H -0.228 1.228 6 H -0.199 1.199 7 C -0.468 4.468 8 H 0.091 0.909 9 N -0.189 5.189 10 C 0.247 3.753 11 O -0.462 6.462 12 C -0.163 4.163 13 C 0.041 3.959 14 H 0.052 0.948 15 C -0.177 4.177 16 C -0.182 4.182 17 C -0.043 4.043 18 O -0.324 6.324 19 C 0.017 3.983 20 C -0.164 4.164 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.167 4.167 24 H 0.063 0.937 25 H 0.123 0.877 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.182 -14.395 -1.898 14.568 hybrid contribution 0.037 1.617 -0.075 1.619 sum -1.145 -12.778 -1.973 12.980 Atomic orbital electron populations 1.69945 1.07777 1.26840 1.46002 1.25899 0.95390 1.02109 0.95079 0.85436 0.79466 0.79893 0.76778 1.18372 1.22813 1.19938 1.18989 0.95065 0.85668 1.47070 0.90903 1.43682 1.44031 1.07975 1.23203 1.20797 0.83202 0.90262 0.81032 1.90496 1.63952 1.35742 1.56006 1.21754 1.00153 0.96628 0.97761 1.22639 0.90863 0.96152 0.86275 0.94760 1.23321 1.01571 0.96669 0.96166 1.23097 0.97216 1.01828 0.96018 1.23350 0.96133 0.97364 0.87404 1.88580 1.49624 1.77688 1.16539 1.22019 0.96467 0.87149 0.92698 1.22592 0.98632 1.00123 0.95039 1.22417 0.93902 1.00239 0.98127 1.22250 0.97781 1.01102 0.93994 1.22429 0.95402 1.01026 0.97796 0.93734 0.87743 0.88191 0.88265 0.88426 0.90527 0.86989 0.90242 0.92407 0.89163 0.93786 0.92248 0.89353 0.91436 0.89582 0.93607 0.89883 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.74 11.66 21.66 0.25 -54.49 16 2 C 0.02 1.23 4.34 84.93 0.37 1.60 16 3 Si 0.96 48.23 29.60 68.60 2.03 50.26 16 4 H -0.26 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 6 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.34 -19.35 7.49 84.04 0.63 -18.72 16 8 H 0.07 4.07 7.04 -2.91 -0.02 4.04 16 9 N -0.47 -23.85 2.46 -609.38 -1.50 -25.35 16 10 C 0.46 24.48 6.88 87.66 0.60 25.08 16 11 O -0.58 -37.38 13.16 8.32 0.11 -37.27 16 12 C -0.12 -4.78 3.77 29.85 0.11 -4.67 16 13 C 0.10 3.70 2.92 31.26 0.09 3.79 16 14 H 0.03 1.53 8.00 -2.39 -0.02 1.51 16 15 C -0.14 -3.32 6.57 32.05 0.21 -3.11 16 16 C -0.14 -3.06 7.02 31.86 0.22 -2.84 16 17 C 0.03 0.97 7.79 72.45 0.56 1.54 16 18 O -0.40 -16.89 10.41 -137.62 -1.43 -18.32 16 19 C 0.12 4.64 3.20 45.72 0.15 4.79 16 20 C -0.13 -4.59 6.42 31.69 0.20 -4.39 16 21 C -0.11 -2.96 6.91 31.91 0.22 -2.74 16 22 C -0.11 -3.24 6.83 31.67 0.22 -3.02 16 23 C -0.13 -4.28 6.19 31.32 0.19 -4.09 16 24 H 0.25 15.50 8.32 -92.71 -0.77 14.73 16 25 H 0.10 3.56 7.83 -2.39 -0.02 3.54 16 26 H 0.10 3.38 7.76 -2.39 -0.02 3.36 16 27 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.10 1.94 8.06 -2.39 -0.02 1.92 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 2.97 5.83 -2.39 -0.01 2.96 16 34 H 0.04 2.02 7.13 -2.39 -0.02 2.01 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.04 1.72 6.81 -2.39 -0.02 1.70 16 Total: -1.00 -79.73 321.27 4.23 -75.50 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.99 Total: 16.45 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 3.78 Total: -6.78 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -1.25 Total: -79.84 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -1.32 Total: -55.59 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -79.73 4.23 -75.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.750 kcal (2) G-P(sol) polarization free energy of solvation -79.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds