Wall clock time and date at job start Mon Mar 30 2020 01:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 120.00021 * 2 1 4 4 H 1.48500 * 109.46968 * 239.99596 * 3 2 1 5 5 H 1.48491 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47396 * 120.00144 * 3 2 1 7 7 C 1.38950 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99472 * 159.87398 * 7 2 1 9 9 N 1.37095 * 120.00581 * 339.87443 * 7 2 1 10 10 C 1.34775 * 119.99850 * 317.56194 * 9 7 2 11 11 O 1.21294 * 120.00086 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99878 * 179.97438 * 10 9 7 13 13 O 1.42898 * 109.47035 * 179.97438 * 12 10 9 14 14 C 1.42904 * 114.00098 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47059 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.49598 * 243.62177 * 15 14 13 17 17 C 1.52999 * 60.00151 * 252.51409 * 16 15 14 18 18 C 1.46497 * 120.00184 * 137.56007 * 9 7 2 19 19 C 1.54275 * 110.03066 * 299.86308 * 18 9 7 20 20 C 1.54963 * 104.15948 * 95.75552 * 19 18 9 21 21 C 1.54886 * 102.77974 * 37.88665 * 20 19 18 22 22 C 1.53876 * 110.03127 * 57.07712 * 18 9 7 23 23 H 0.97003 * 120.00038 * 355.11556 * 1 2 3 24 24 H 1.08996 * 109.47523 * 299.99726 * 12 10 9 25 25 H 1.09006 * 109.47084 * 59.99944 * 12 10 9 26 26 H 1.08995 * 109.47513 * 300.00359 * 14 13 12 27 27 H 1.09004 * 109.46874 * 60.00581 * 14 13 12 28 28 H 1.08996 * 115.54835 * 29.33529 * 15 14 13 29 29 H 1.08996 * 117.50372 * 0.02562 * 16 15 14 30 30 H 1.09004 * 117.49244 * 145.01928 * 16 15 14 31 31 H 1.08996 * 117.49824 * 252.51135 * 17 16 15 32 32 H 1.08994 * 117.49415 * 107.49430 * 17 16 15 33 33 H 1.09001 * 110.01903 * 178.46975 * 18 9 7 34 34 H 1.09004 * 110.48257 * 214.40004 * 19 18 9 35 35 H 1.08997 * 110.48675 * 337.03860 * 19 18 9 36 36 H 1.09004 * 110.71727 * 279.57101 * 20 19 18 37 37 H 1.08998 * 110.91991 * 156.29765 * 20 19 18 38 38 H 1.09005 * 110.48576 * 203.40480 * 21 20 19 39 39 H 1.09000 * 110.60163 * 80.81997 * 21 20 19 40 40 H 1.08990 * 110.03336 * 359.95464 * 22 18 9 41 41 H 1.09003 * 110.03022 * 121.38551 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0394 -1.2321 -0.3213 9 7 1.3861 -2.3543 0.4095 10 6 0.5915 -2.3402 1.4981 11 8 0.4277 -1.3095 2.1161 12 6 -0.0934 -3.6051 1.9473 13 8 -0.8730 -3.3360 3.1142 14 6 -1.5681 -4.4756 3.6245 15 6 -2.3658 -4.0725 4.8663 16 6 -1.9780 -4.7217 6.1964 17 6 -3.2754 -5.1298 5.4955 18 6 1.5844 -3.5993 -0.3366 19 6 1.1022 -3.4258 -1.7917 20 6 2.3893 -3.0692 -2.5776 21 6 3.4610 -3.9606 -1.9024 22 6 3.0836 -3.9387 -0.4067 23 1 -0.4850 0.8370 0.0715 24 1 -0.7434 -3.9687 1.1516 25 1 0.6564 -4.3619 2.1783 26 1 -2.2491 -4.8566 2.8635 27 1 -0.8493 -5.2508 3.8898 28 1 -2.7054 -3.0371 4.8913 29 1 -1.1544 -5.4356 6.1869 30 1 -2.0623 -4.1131 7.0969 31 1 -4.2132 -4.7898 5.9349 32 1 -3.3054 -6.1124 5.0249 33 1 1.0394 -4.4125 0.1429 34 1 0.6729 -4.3557 -2.1648 35 1 0.3763 -2.6155 -1.8590 36 1 2.6338 -2.0137 -2.4585 37 1 2.2842 -3.3233 -3.6324 38 1 4.4556 -3.5402 -2.0510 39 1 3.4155 -4.9774 -2.2925 40 1 3.6637 -3.1768 0.1137 41 1 3.2662 -4.9167 0.0388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078208791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:27 Heat of formation + Delta-G solvation = -49.250154 kcal Electronic energy + Delta-G solvation = -21167.556849 eV Core-core repulsion = 18048.717523 eV Total energy + Delta-G solvation = -3118.839327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -38.98578 -38.00414 -36.73950 -35.75069 -33.04456 -31.53356 -28.33508 -27.99525 -26.96224 -26.03392 -23.79540 -22.40214 -20.65402 -20.22818 -19.78375 -19.03803 -16.77606 -16.09858 -15.82892 -15.68821 -15.13629 -14.74910 -14.40976 -14.29212 -13.80503 -13.46433 -13.30677 -12.71151 -12.69915 -11.86206 -11.64195 -11.53636 -11.34034 -10.98028 -10.85964 -10.70055 -10.63757 -10.53971 -10.51476 -10.43251 -10.33434 -10.25719 -10.06390 -9.88237 -9.75877 -9.11993 -8.63771 -7.91659 -7.03443 -6.00788 -3.75654 3.37051 3.45370 3.49080 3.64223 3.97825 4.28195 4.46518 4.81929 4.91174 4.97601 5.25188 5.27535 5.28834 5.42049 5.45210 5.51176 5.56816 5.61846 5.74553 5.76788 5.85921 5.96506 6.01252 6.03526 6.06884 6.12711 6.23873 6.29065 6.29891 6.36692 6.50691 6.52925 6.65956 6.93517 7.03523 7.18376 7.61051 7.73795 8.37634 9.14089 9.28961 9.74956 10.38346 11.06893 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.005864 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.807478 B = 4773.474337 C = 5935.182424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.447 5.447 10 C 0.476 3.524 11 O -0.515 6.515 12 C 0.051 3.949 13 O -0.356 6.356 14 C 0.090 3.910 15 C -0.147 4.147 16 C -0.178 4.178 17 C -0.177 4.177 18 C 0.129 3.871 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.131 4.131 23 H 0.263 0.737 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 -12.135 1.866 12.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.171 5.171 10 C 0.262 3.738 11 O -0.391 6.391 12 C -0.029 4.029 13 O -0.274 6.274 14 C 0.013 3.987 15 C -0.165 4.165 16 C -0.215 4.215 17 C -0.214 4.214 18 C 0.023 3.977 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.170 4.170 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.133 0.867 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.225 -11.284 2.231 11.567 hybrid contribution 0.300 0.392 -0.151 0.516 sum -0.925 -10.892 2.080 11.127 Atomic orbital electron populations 1.69874 1.06468 1.27731 1.42331 1.25125 0.94635 0.99148 0.94855 0.86449 0.79488 0.82844 0.78307 1.20493 1.21382 1.20160 1.18740 0.94963 0.84659 1.47840 0.90362 1.43270 1.44870 1.07221 1.21785 1.19525 0.83805 0.88438 0.82046 1.90540 1.61338 1.32581 1.54611 1.22392 0.94193 0.98618 0.87729 1.88049 1.63629 1.32131 1.43586 1.21969 0.94042 0.88753 0.93953 1.22139 1.02046 0.99248 0.93081 1.23041 0.98462 1.03670 0.96356 1.22950 0.94831 0.99387 1.04238 1.21704 0.94648 0.88357 0.92970 1.22581 0.98248 1.00464 0.94846 1.22450 0.94874 1.01042 0.97023 1.22273 0.98733 0.98862 0.95746 1.22500 0.97393 1.00593 0.96482 0.92657 0.92409 0.92623 0.93332 0.93735 0.86666 0.88806 0.88747 0.88606 0.88861 0.91987 0.93212 0.90029 0.90072 0.93290 0.92552 0.92841 0.90428 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.83 11.71 55.50 0.65 -24.18 16 2 C 0.07 2.05 4.32 -17.47 -0.08 1.97 16 3 Si 0.90 22.17 29.60 -169.99 -5.03 17.13 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.34 -8.96 6.98 -14.93 -0.10 -9.06 16 8 H 0.08 2.02 6.88 -52.48 -0.36 1.66 16 9 N -0.45 -10.98 2.40 -106.54 -0.26 -11.24 16 10 C 0.48 12.48 7.05 -10.99 -0.08 12.40 16 11 O -0.52 -16.00 14.15 -14.37 -0.20 -16.20 16 12 C 0.05 1.05 4.73 36.00 0.17 1.22 16 13 O -0.36 -7.56 9.88 -55.14 -0.54 -8.10 16 14 C 0.09 1.39 6.22 37.16 0.23 1.62 16 15 C -0.15 -2.05 6.06 -90.61 -0.55 -2.60 16 16 C -0.18 -2.05 10.18 -26.73 -0.27 -2.33 16 17 C -0.18 -1.87 10.25 -26.73 -0.27 -2.15 16 18 C 0.13 2.48 3.26 -66.81 -0.22 2.27 16 19 C -0.12 -2.27 6.13 -25.03 -0.15 -2.42 16 20 C -0.12 -1.98 6.56 -24.70 -0.16 -2.14 16 21 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 22 C -0.13 -2.23 6.19 -25.61 -0.16 -2.38 16 23 H 0.26 7.70 8.32 -40.82 -0.34 7.36 16 24 H 0.06 1.10 7.82 -51.93 -0.41 0.69 16 25 H 0.06 0.99 7.76 -51.93 -0.40 0.58 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.61 7.88 -51.93 -0.41 0.20 16 28 H 0.12 1.78 8.14 -51.93 -0.42 1.36 16 29 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.07 5.83 -51.93 -0.30 0.77 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.81 8.02 -51.93 -0.42 1.39 16 36 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.49 6.82 -51.93 -0.35 1.13 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -33.10 329.76 -9.03 -42.14 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.80 Total: 1.05 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.81 Total: -5.56 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.39 Total: -35.42 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.75 Total: -24.31 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.10 -9.03 -42.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.113 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds