Wall clock time and date at job start Mon Mar 30 2020 01:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 120.00021 * 2 1 4 4 H 1.48500 * 109.46968 * 239.99596 * 3 2 1 5 5 H 1.48491 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47396 * 120.00144 * 3 2 1 7 7 C 1.38950 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99472 * 159.87398 * 7 2 1 9 9 N 1.37095 * 120.00581 * 339.87443 * 7 2 1 10 10 C 1.34775 * 119.99850 * 317.56194 * 9 7 2 11 11 O 1.21294 * 120.00086 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99878 * 179.97438 * 10 9 7 13 13 O 1.42898 * 109.47035 * 179.97438 * 12 10 9 14 14 C 1.42904 * 114.00098 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47059 * 180.02562 * 14 13 12 16 16 C 1.53001 * 117.49598 * 243.62177 * 15 14 13 17 17 C 1.52999 * 60.00151 * 252.51409 * 16 15 14 18 18 C 1.46497 * 120.00184 * 137.56007 * 9 7 2 19 19 C 1.54275 * 110.03066 * 299.86308 * 18 9 7 20 20 C 1.54963 * 104.15948 * 95.75552 * 19 18 9 21 21 C 1.54886 * 102.77974 * 37.88665 * 20 19 18 22 22 C 1.53876 * 110.03127 * 57.07712 * 18 9 7 23 23 H 0.97003 * 120.00038 * 355.11556 * 1 2 3 24 24 H 1.08996 * 109.47523 * 299.99726 * 12 10 9 25 25 H 1.09006 * 109.47084 * 59.99944 * 12 10 9 26 26 H 1.08995 * 109.47513 * 300.00359 * 14 13 12 27 27 H 1.09004 * 109.46874 * 60.00581 * 14 13 12 28 28 H 1.08996 * 115.54835 * 29.33529 * 15 14 13 29 29 H 1.08996 * 117.50372 * 0.02562 * 16 15 14 30 30 H 1.09004 * 117.49244 * 145.01928 * 16 15 14 31 31 H 1.08996 * 117.49824 * 252.51135 * 17 16 15 32 32 H 1.08994 * 117.49415 * 107.49430 * 17 16 15 33 33 H 1.09001 * 110.01903 * 178.46975 * 18 9 7 34 34 H 1.09004 * 110.48257 * 214.40004 * 19 18 9 35 35 H 1.08997 * 110.48675 * 337.03860 * 19 18 9 36 36 H 1.09004 * 110.71727 * 279.57101 * 20 19 18 37 37 H 1.08998 * 110.91991 * 156.29765 * 20 19 18 38 38 H 1.09005 * 110.48576 * 203.40480 * 21 20 19 39 39 H 1.09000 * 110.60163 * 80.81997 * 21 20 19 40 40 H 1.08990 * 110.03336 * 359.95464 * 22 18 9 41 41 H 1.09003 * 110.03022 * 121.38551 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0394 -1.2321 -0.3213 9 7 1.3861 -2.3543 0.4095 10 6 0.5915 -2.3402 1.4981 11 8 0.4277 -1.3095 2.1161 12 6 -0.0934 -3.6051 1.9473 13 8 -0.8730 -3.3360 3.1142 14 6 -1.5681 -4.4756 3.6245 15 6 -2.3658 -4.0725 4.8663 16 6 -1.9780 -4.7217 6.1964 17 6 -3.2754 -5.1298 5.4955 18 6 1.5844 -3.5993 -0.3366 19 6 1.1022 -3.4258 -1.7917 20 6 2.3893 -3.0692 -2.5776 21 6 3.4610 -3.9606 -1.9024 22 6 3.0836 -3.9387 -0.4067 23 1 -0.4850 0.8370 0.0715 24 1 -0.7434 -3.9687 1.1516 25 1 0.6564 -4.3619 2.1783 26 1 -2.2491 -4.8566 2.8635 27 1 -0.8493 -5.2508 3.8898 28 1 -2.7054 -3.0371 4.8913 29 1 -1.1544 -5.4356 6.1869 30 1 -2.0623 -4.1131 7.0969 31 1 -4.2132 -4.7898 5.9349 32 1 -3.3054 -6.1124 5.0249 33 1 1.0394 -4.4125 0.1429 34 1 0.6729 -4.3557 -2.1648 35 1 0.3763 -2.6155 -1.8590 36 1 2.6338 -2.0137 -2.4585 37 1 2.2842 -3.3233 -3.6324 38 1 4.4556 -3.5402 -2.0510 39 1 3.4155 -4.9774 -2.2925 40 1 3.6637 -3.1768 0.1137 41 1 3.2662 -4.9167 0.0388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078208791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:25 Heat of formation + Delta-G solvation = -68.947101 kcal Electronic energy + Delta-G solvation = -21168.410973 eV Core-core repulsion = 18048.717523 eV Total energy + Delta-G solvation = -3119.693450 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.72591 -39.27995 -38.24026 -37.17763 -34.99407 -33.50586 -29.92300 -29.37008 -28.52873 -27.45583 -25.68655 -23.25088 -22.01102 -21.60917 -21.18121 -20.80833 -18.41420 -17.75604 -17.48943 -17.17824 -16.53443 -16.44380 -15.89374 -15.74974 -15.31519 -15.00815 -14.92992 -14.27272 -14.07710 -13.43309 -13.24205 -13.15600 -12.83116 -12.62817 -12.37667 -12.37398 -12.26606 -12.04513 -12.02079 -11.78840 -11.73171 -11.44153 -11.37420 -11.19994 -11.15522 -10.69978 -10.45300 -9.94738 -9.06884 -8.13789 -5.89093 1.36626 1.45328 1.48533 2.21316 2.42100 2.51858 2.91833 3.30045 3.38629 3.87280 3.90088 3.96457 3.98580 4.02723 4.17213 4.21354 4.32869 4.38776 4.43394 4.56770 4.63347 4.71666 4.75200 4.76528 4.86535 4.92021 4.99640 4.99875 5.17814 5.21543 5.23758 5.24897 5.31416 5.50080 5.53884 5.62379 5.76716 6.19434 6.34242 7.08677 7.30385 7.73890 8.39831 8.93172 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.005864 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.807478 B = 4773.474337 C = 5935.182424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.020 3.980 3 Si 0.954 3.046 4 H -0.255 1.255 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.331 4.331 8 H 0.083 0.917 9 N -0.454 5.454 10 C 0.453 3.547 11 O -0.580 6.580 12 C 0.064 3.936 13 O -0.398 6.398 14 C 0.087 3.913 15 C -0.184 4.184 16 C -0.175 4.175 17 C -0.149 4.149 18 C 0.117 3.883 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.108 4.108 22 C -0.128 4.128 23 H 0.253 0.747 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.033 0.967 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 -15.517 1.417 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.459 4.459 8 H 0.101 0.899 9 N -0.177 5.177 10 C 0.241 3.759 11 O -0.461 6.461 12 C -0.015 4.015 13 O -0.317 6.317 14 C 0.011 3.989 15 C -0.202 4.202 16 C -0.212 4.212 17 C -0.186 4.186 18 C 0.013 3.987 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.145 4.145 22 C -0.166 4.166 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.343 -14.712 1.738 14.818 hybrid contribution 0.045 1.353 0.011 1.354 sum -0.297 -13.358 1.749 13.476 Atomic orbital electron populations 1.69997 1.07916 1.27513 1.45096 1.25909 0.95226 1.02293 0.95162 0.85618 0.78345 0.79370 0.78674 1.17908 1.21955 1.21076 1.18973 0.95136 0.85764 1.46007 0.89941 1.43549 1.43883 1.08422 1.21894 1.20595 0.83744 0.89717 0.81804 1.90489 1.63594 1.35310 1.56713 1.22192 0.95020 0.95907 0.88402 1.88011 1.64384 1.35531 1.43762 1.22241 0.94474 0.87583 0.94627 1.22106 1.04879 0.99045 0.94201 1.23161 0.99600 1.03339 0.95078 1.23075 0.94717 0.98784 1.02045 1.22099 0.97026 0.86571 0.93025 1.22536 0.97934 1.00484 0.94856 1.22410 0.94908 0.99462 0.98671 1.22251 0.98124 1.00245 0.93916 1.22468 0.94760 1.01368 0.98000 0.93754 0.90698 0.89090 0.92040 0.91455 0.89504 0.87714 0.88352 0.87375 0.86887 0.89346 0.89508 0.94761 0.93716 0.90785 0.91858 0.89406 0.93286 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.70 11.71 21.66 0.25 -54.45 16 2 C 0.02 1.15 4.32 84.93 0.37 1.51 16 3 Si 0.95 47.11 29.60 68.60 2.03 49.14 16 4 H -0.25 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 6 H -0.28 -14.30 7.11 99.48 0.71 -13.59 16 7 C -0.33 -18.15 6.98 84.04 0.59 -17.57 16 8 H 0.08 4.35 6.88 -2.91 -0.02 4.33 16 9 N -0.45 -22.56 2.40 -609.37 -1.46 -24.02 16 10 C 0.45 24.30 7.05 87.66 0.62 24.92 16 11 O -0.58 -37.81 14.15 15.96 0.23 -37.58 16 12 C 0.06 2.61 4.73 71.23 0.34 2.94 16 13 O -0.40 -17.00 9.88 -129.94 -1.28 -18.28 16 14 C 0.09 2.56 6.22 71.98 0.45 3.01 16 15 C -0.18 -5.03 6.06 -10.79 -0.07 -5.10 16 16 C -0.17 -3.71 10.18 30.59 0.31 -3.39 16 17 C -0.15 -2.78 10.25 30.60 0.31 -2.47 16 18 C 0.12 4.28 3.26 45.72 0.15 4.43 16 19 C -0.12 -4.23 6.13 31.70 0.19 -4.04 16 20 C -0.12 -3.75 6.56 31.91 0.21 -3.54 16 21 C -0.11 -2.85 6.83 31.67 0.22 -2.64 16 22 C -0.13 -3.95 6.19 31.32 0.19 -3.76 16 23 H 0.25 15.73 8.32 -92.71 -0.77 14.96 16 24 H 0.08 2.72 7.82 -2.39 -0.02 2.70 16 25 H 0.09 2.97 7.76 -2.38 -0.02 2.95 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.65 7.88 -2.39 -0.02 1.63 16 28 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.10 1.98 8.03 -2.39 -0.02 1.96 16 30 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 2.75 5.83 -2.39 -0.01 2.74 16 34 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.03 1.53 8.02 -2.39 -0.02 1.51 16 36 H 0.04 1.74 7.16 -2.38 -0.02 1.72 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.80 6.82 -2.39 -0.02 1.79 16 41 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -77.87 329.76 4.64 -73.23 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.99 Total: 17.63 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 3.88 Total: -5.67 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.21 Total: -78.47 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -1.06 Total: -55.86 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -77.87 4.64 -73.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078208791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.284 kcal (2) G-P(sol) polarization free energy of solvation -77.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds