Wall clock time and date at job start Mon Mar 30 2020 01:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 120.00409 * 2 1 4 4 H 1.48500 * 109.46539 * 269.99875 * 3 2 1 5 5 H 1.48497 * 109.47082 * 29.99147 * 3 2 1 6 6 H 1.48498 * 109.47263 * 149.99867 * 3 2 1 7 7 C 1.38953 * 119.99412 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 191.85367 * 7 2 1 9 9 N 1.37094 * 120.00048 * 11.86506 * 7 2 1 10 10 C 1.34773 * 120.00473 * 55.96688 * 9 7 2 11 11 O 1.21294 * 119.99945 * 185.52995 * 10 9 7 12 12 C 1.50700 * 119.99926 * 5.52938 * 10 9 7 13 13 H 1.08998 * 109.52336 * 324.17887 * 12 10 9 14 14 C 1.53184 * 109.52242 * 204.05232 * 12 10 9 15 15 C 1.53176 * 109.03358 * 183.11412 * 14 12 10 16 16 C 1.53093 * 109.16434 * 56.98453 * 15 14 12 17 17 O 1.42904 * 109.41148 * 302.38851 * 16 15 14 18 18 C 1.42904 * 114.10128 * 61.15830 * 17 16 15 19 19 C 1.46498 * 119.99560 * 235.96971 * 9 7 2 20 20 C 1.54262 * 110.07634 * 302.11663 * 19 9 7 21 21 C 1.54888 * 104.19903 * 95.69536 * 20 19 9 22 22 C 1.54891 * 102.74580 * 37.94570 * 21 20 19 23 23 C 1.53878 * 110.03593 * 59.30773 * 19 9 7 24 24 H 0.97007 * 119.99680 * 356.26275 * 1 2 3 25 25 H 1.08994 * 109.54149 * 302.98218 * 14 12 10 26 26 H 1.08999 * 109.54045 * 63.15916 * 14 12 10 27 27 H 1.09004 * 109.51941 * 176.88499 * 15 14 12 28 28 H 1.08999 * 109.52040 * 297.07522 * 15 14 12 29 29 H 1.08997 * 109.47987 * 62.36674 * 16 15 14 30 30 H 1.08998 * 109.47869 * 182.41180 * 16 15 14 31 31 H 1.08996 * 109.48086 * 178.85889 * 18 17 16 32 32 H 1.09001 * 109.47405 * 58.82440 * 18 17 16 33 33 H 1.09004 * 110.02139 * 180.70096 * 19 9 7 34 34 H 1.09002 * 110.49051 * 214.37475 * 20 19 9 35 35 H 1.09004 * 110.48226 * 337.01865 * 20 19 9 36 36 H 1.08999 * 110.75745 * 279.63417 * 21 20 19 37 37 H 1.09003 * 110.76249 * 156.25797 * 21 20 19 38 38 H 1.08998 * 110.48683 * 203.37942 * 22 21 20 39 39 H 1.08998 * 110.59855 * 80.79273 * 22 21 20 40 40 H 1.09004 * 110.03031 * 359.95098 * 23 19 9 41 41 H 1.09001 * 110.03130 * 121.38164 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6527 0.6998 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0715 -1.2134 0.1927 9 7 1.3452 -2.3781 -0.2430 10 6 0.6316 -2.5264 -1.3767 11 8 -0.0362 -3.5246 -1.5467 12 6 0.6633 -1.4521 -2.4330 13 1 0.7206 -0.4738 -1.9560 14 6 -0.6079 -1.5332 -3.2839 15 6 -0.5285 -0.4884 -4.4013 16 6 0.7388 -0.7295 -5.2257 17 8 1.8810 -0.6712 -4.3689 18 6 1.8846 -1.6560 -3.3334 19 6 1.4117 -3.4721 0.7290 20 6 2.8801 -3.8811 0.9662 21 6 3.2944 -3.0923 2.2331 22 6 2.0139 -3.1455 3.1028 23 6 0.8609 -3.0043 2.0876 24 1 -0.4850 0.8383 0.0548 25 1 -0.6915 -2.5283 -3.7205 26 1 -1.4784 -1.3349 -2.6587 27 1 -1.4039 -0.5762 -5.0449 28 1 -0.4947 0.5098 -3.9648 29 1 0.6859 -1.7121 -5.6946 30 1 0.8227 0.0372 -5.9959 31 1 2.7939 -1.5568 -2.7406 32 1 1.8467 -2.6506 -3.7777 33 1 0.8396 -4.3270 0.3685 34 1 2.9533 -4.9541 1.1440 35 1 3.4988 -3.5911 0.1169 36 1 3.5478 -2.0625 1.9812 37 1 4.1258 -3.5831 2.7392 38 1 2.0003 -2.3186 3.8128 39 1 1.9458 -4.0985 3.6273 40 1 0.5449 -1.9631 2.0239 41 1 0.0215 -3.6322 2.3863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:21 Heat of formation + Delta-G solvation = -95.934373 kcal Electronic energy + Delta-G solvation = -22403.507294 eV Core-core repulsion = 19282.643587 eV Total energy + Delta-G solvation = -3120.863706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.47972 -38.16668 -36.48318 -34.04000 -32.79953 -31.33085 -30.49587 -27.91678 -27.12178 -24.77869 -24.31992 -23.35313 -20.61101 -19.85831 -19.20760 -18.85226 -16.75922 -15.85153 -15.46996 -15.37110 -15.14481 -14.47943 -14.28842 -14.12859 -14.01614 -13.18402 -12.95227 -12.66143 -12.42756 -12.16844 -11.94066 -11.47876 -11.27238 -11.08817 -10.75840 -10.65245 -10.59997 -10.46478 -10.39419 -10.32176 -10.27638 -10.21826 -9.96376 -9.72847 -9.65183 -9.06842 -8.60113 -8.14223 -7.18906 -6.39571 -4.23906 3.14786 3.22855 3.24950 4.00407 4.16797 4.39372 4.82887 4.95227 5.36525 5.40339 5.43489 5.45892 5.54543 5.65777 5.80464 5.91510 6.00092 6.11237 6.12098 6.24999 6.31049 6.33760 6.36627 6.39899 6.47374 6.54452 6.60335 6.62701 6.67197 6.74577 6.80759 6.95751 7.00299 7.12594 7.30976 7.36376 7.50024 7.72052 8.06469 8.67129 8.95564 9.62874 10.06191 10.66025 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.008761 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.542546 B = 3195.247792 C = 3896.920470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.053 3.947 3 Si 0.902 3.098 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.333 4.333 8 H 0.082 0.918 9 N -0.447 5.447 10 C 0.527 3.473 11 O -0.611 6.611 12 C -0.129 4.129 13 H 0.130 0.870 14 C -0.098 4.098 15 C -0.153 4.153 16 C 0.061 3.939 17 O -0.384 6.384 18 C 0.079 3.921 19 C 0.132 3.868 20 C -0.124 4.124 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.124 4.124 24 H 0.271 0.729 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -0.819 -2.093 3.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.154 4.154 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.461 4.461 8 H 0.099 0.901 9 N -0.167 5.167 10 C 0.317 3.683 11 O -0.497 6.497 12 C -0.151 4.151 13 H 0.147 0.853 14 C -0.136 4.136 15 C -0.191 4.191 16 C -0.016 4.016 17 O -0.303 6.303 18 C 0.003 3.997 19 C 0.028 3.972 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.162 4.162 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.730 -1.050 -2.207 3.664 hybrid contribution -0.030 0.827 0.303 0.881 sum 2.700 -0.223 -1.904 3.311 Atomic orbital electron populations 1.69937 1.05959 1.27928 1.45664 1.25585 0.95253 0.99863 0.94665 0.86322 0.79825 0.81981 0.79132 1.19440 1.20938 1.19258 1.19108 0.92572 0.82449 1.52010 0.90086 1.43348 1.46215 1.12784 1.14363 1.20123 0.79733 0.85734 0.82666 1.90474 1.45350 1.33036 1.80842 1.21859 0.94588 1.03697 0.94925 0.85271 1.21332 0.98342 0.97935 0.96021 1.22187 0.97799 1.00757 0.98361 1.22507 0.86191 1.00558 0.92326 1.87894 1.42262 1.56646 1.43461 1.22435 0.99222 0.90143 0.87946 1.21534 0.94403 0.91420 0.89830 1.22580 0.97420 0.98126 0.98138 1.22477 0.96241 1.01190 0.95591 1.22248 0.95878 0.99776 0.97530 1.22395 0.96372 1.03465 0.93959 0.91909 0.92191 0.91609 0.91695 0.91354 0.93751 0.89753 0.88194 0.94243 0.90707 0.92697 0.91669 0.90386 0.93366 0.92640 0.93174 0.89130 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.91 11.74 55.50 0.65 -21.26 16 2 C 0.05 1.27 3.43 -17.46 -0.06 1.21 16 3 Si 0.90 19.09 29.57 -169.99 -5.03 14.07 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.33 -7.89 6.39 -14.93 -0.10 -7.99 16 8 H 0.08 1.89 6.60 -52.49 -0.35 1.54 16 9 N -0.45 -10.72 2.28 -106.54 -0.24 -10.96 16 10 C 0.53 13.27 6.09 -10.99 -0.07 13.20 16 11 O -0.61 -16.74 15.39 5.55 0.09 -16.65 16 12 C -0.13 -2.93 1.80 -91.63 -0.16 -3.09 16 13 H 0.13 3.17 4.33 -51.93 -0.22 2.95 16 14 C -0.10 -2.03 4.89 -26.55 -0.13 -2.16 16 15 C -0.15 -2.59 6.14 -26.59 -0.16 -2.75 16 16 C 0.06 0.98 6.84 37.21 0.25 1.24 16 17 O -0.38 -7.45 10.77 -35.23 -0.38 -7.83 16 18 C 0.08 1.62 6.11 37.20 0.23 1.85 16 19 C 0.13 2.88 3.34 -66.81 -0.22 2.66 16 20 C -0.12 -2.28 6.01 -25.07 -0.15 -2.43 16 21 C -0.12 -1.99 6.54 -24.74 -0.16 -2.15 16 22 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 23 C -0.12 -2.53 6.28 -25.61 -0.16 -2.70 16 24 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 25 H 0.06 1.25 7.77 -51.93 -0.40 0.84 16 26 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 2.04 8.02 -51.93 -0.42 1.62 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.74 6.96 -51.93 -0.36 1.38 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.23 7.98 -51.93 -0.41 0.82 16 36 H 0.08 1.44 6.59 -51.93 -0.34 1.09 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 2.16 7.34 -51.93 -0.38 1.78 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -27.48 315.22 -7.90 -35.39 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.68 Total: 7.77 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.07 Total: -5.28 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.41 Total: -32.21 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.29 Total: -24.48 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.48 -7.90 -35.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.546 kcal (2) G-P(sol) polarization free energy of solvation -27.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds