Wall clock time and date at job start Mon Mar 30 2020 01:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 120.00409 * 2 1 4 4 H 1.48500 * 109.46539 * 269.99875 * 3 2 1 5 5 H 1.48497 * 109.47082 * 29.99147 * 3 2 1 6 6 H 1.48498 * 109.47263 * 149.99867 * 3 2 1 7 7 C 1.38953 * 119.99412 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 191.85367 * 7 2 1 9 9 N 1.37094 * 120.00048 * 11.86506 * 7 2 1 10 10 C 1.34773 * 120.00473 * 55.96688 * 9 7 2 11 11 O 1.21294 * 119.99945 * 185.52995 * 10 9 7 12 12 C 1.50700 * 119.99926 * 5.52938 * 10 9 7 13 13 H 1.08998 * 109.52336 * 324.17887 * 12 10 9 14 14 C 1.53184 * 109.52242 * 204.05232 * 12 10 9 15 15 C 1.53176 * 109.03358 * 183.11412 * 14 12 10 16 16 C 1.53093 * 109.16434 * 56.98453 * 15 14 12 17 17 O 1.42904 * 109.41148 * 302.38851 * 16 15 14 18 18 C 1.42904 * 114.10128 * 61.15830 * 17 16 15 19 19 C 1.46498 * 119.99560 * 235.96971 * 9 7 2 20 20 C 1.54262 * 110.07634 * 302.11663 * 19 9 7 21 21 C 1.54888 * 104.19903 * 95.69536 * 20 19 9 22 22 C 1.54891 * 102.74580 * 37.94570 * 21 20 19 23 23 C 1.53878 * 110.03593 * 59.30773 * 19 9 7 24 24 H 0.97007 * 119.99680 * 356.26275 * 1 2 3 25 25 H 1.08994 * 109.54149 * 302.98218 * 14 12 10 26 26 H 1.08999 * 109.54045 * 63.15916 * 14 12 10 27 27 H 1.09004 * 109.51941 * 176.88499 * 15 14 12 28 28 H 1.08999 * 109.52040 * 297.07522 * 15 14 12 29 29 H 1.08997 * 109.47987 * 62.36674 * 16 15 14 30 30 H 1.08998 * 109.47869 * 182.41180 * 16 15 14 31 31 H 1.08996 * 109.48086 * 178.85889 * 18 17 16 32 32 H 1.09001 * 109.47405 * 58.82440 * 18 17 16 33 33 H 1.09004 * 110.02139 * 180.70096 * 19 9 7 34 34 H 1.09002 * 110.49051 * 214.37475 * 20 19 9 35 35 H 1.09004 * 110.48226 * 337.01865 * 20 19 9 36 36 H 1.08999 * 110.75745 * 279.63417 * 21 20 19 37 37 H 1.09003 * 110.76249 * 156.25797 * 21 20 19 38 38 H 1.08998 * 110.48683 * 203.37942 * 22 21 20 39 39 H 1.08998 * 110.59855 * 80.79273 * 22 21 20 40 40 H 1.09004 * 110.03031 * 359.95098 * 23 19 9 41 41 H 1.09001 * 110.03130 * 121.38164 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6527 0.6998 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0715 -1.2134 0.1927 9 7 1.3452 -2.3781 -0.2430 10 6 0.6316 -2.5264 -1.3767 11 8 -0.0362 -3.5246 -1.5467 12 6 0.6633 -1.4521 -2.4330 13 1 0.7206 -0.4738 -1.9560 14 6 -0.6079 -1.5332 -3.2839 15 6 -0.5285 -0.4884 -4.4013 16 6 0.7388 -0.7295 -5.2257 17 8 1.8810 -0.6712 -4.3689 18 6 1.8846 -1.6560 -3.3334 19 6 1.4117 -3.4721 0.7290 20 6 2.8801 -3.8811 0.9662 21 6 3.2944 -3.0923 2.2331 22 6 2.0139 -3.1455 3.1028 23 6 0.8609 -3.0043 2.0876 24 1 -0.4850 0.8383 0.0548 25 1 -0.6915 -2.5283 -3.7205 26 1 -1.4784 -1.3349 -2.6587 27 1 -1.4039 -0.5762 -5.0449 28 1 -0.4947 0.5098 -3.9648 29 1 0.6859 -1.7121 -5.6946 30 1 0.8227 0.0372 -5.9959 31 1 2.7939 -1.5568 -2.7406 32 1 1.8467 -2.6506 -3.7777 33 1 0.8396 -4.3270 0.3685 34 1 2.9533 -4.9541 1.1440 35 1 3.4988 -3.5911 0.1169 36 1 3.5478 -2.0625 1.9812 37 1 4.1258 -3.5831 2.7392 38 1 2.0003 -2.3186 3.8128 39 1 1.9458 -4.0985 3.6273 40 1 0.5449 -1.9631 2.0239 41 1 0.0215 -3.6322 2.3863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080212236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:20 Heat of formation + Delta-G solvation = -111.183730 kcal Electronic energy + Delta-G solvation = -22404.168555 eV Core-core repulsion = 19282.643587 eV Total energy + Delta-G solvation = -3121.524968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24193 -39.74086 -38.20277 -35.89836 -34.38168 -33.18163 -32.05227 -29.44910 -28.75247 -26.62672 -25.87825 -24.95509 -22.21141 -21.29640 -20.99449 -20.54526 -18.58148 -17.54266 -17.16847 -16.93885 -16.84104 -16.15771 -15.83859 -15.75494 -15.58504 -14.81279 -14.63171 -14.34246 -14.05193 -13.86397 -13.47160 -13.22839 -12.96378 -12.83428 -12.43780 -12.29662 -12.17131 -12.09703 -11.95695 -11.83142 -11.80538 -11.74429 -11.48862 -11.31818 -11.25110 -10.75802 -10.32778 -10.06520 -9.08104 -8.27235 -6.16295 1.43715 1.50906 1.55617 2.12686 2.35877 2.86924 3.05032 3.17694 3.88390 3.92531 3.95422 3.99563 4.06176 4.21745 4.25524 4.33185 4.53923 4.58621 4.64998 4.74339 4.78559 4.82370 4.82839 4.90449 4.95968 4.98929 5.05971 5.08779 5.17333 5.21089 5.26807 5.33602 5.41386 5.50636 5.52688 5.65078 5.72612 6.20152 6.24404 6.76082 7.07239 7.70054 8.15776 8.79034 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018857 B = 0.008761 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.542546 B = 3195.247792 C = 3896.920470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.022 3.978 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.333 4.333 8 H 0.088 0.912 9 N -0.449 5.449 10 C 0.509 3.491 11 O -0.646 6.646 12 C -0.128 4.128 13 H 0.111 0.889 14 C -0.096 4.096 15 C -0.145 4.145 16 C 0.055 3.945 17 O -0.394 6.394 18 C 0.090 3.910 19 C 0.118 3.882 20 C -0.116 4.116 21 C -0.110 4.110 22 C -0.107 4.107 23 C -0.121 4.121 24 H 0.269 0.731 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -0.472 -2.257 5.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.182 4.182 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.179 1.179 7 C -0.461 4.461 8 H 0.106 0.894 9 N -0.168 5.168 10 C 0.300 3.700 11 O -0.535 6.535 12 C -0.150 4.150 13 H 0.129 0.871 14 C -0.134 4.134 15 C -0.183 4.183 16 C -0.021 4.021 17 O -0.313 6.313 18 C 0.013 3.987 19 C 0.015 3.985 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.159 4.159 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.398 -0.700 -2.353 5.036 hybrid contribution -0.609 0.674 0.360 0.977 sum 3.789 -0.027 -1.993 4.281 Atomic orbital electron populations 1.70050 1.07413 1.28379 1.46804 1.26167 0.95607 1.02329 0.94098 0.85467 0.79150 0.78488 0.78808 1.19719 1.21275 1.17908 1.19279 0.92787 0.82471 1.51529 0.89427 1.43549 1.45452 1.13386 1.14381 1.20690 0.79701 0.86004 0.83587 1.90430 1.46919 1.34502 1.81648 1.21823 0.96655 1.01588 0.94910 0.87100 1.21289 0.96380 0.99038 0.96688 1.22160 0.99986 0.98646 0.97501 1.22816 0.84367 1.02752 0.92157 1.87876 1.43820 1.56245 1.43343 1.22238 0.97766 0.90723 0.88015 1.21783 0.96826 0.90129 0.89811 1.22526 0.94374 0.99819 0.98716 1.22428 0.97215 1.00290 0.94842 1.22218 0.93992 1.01566 0.96690 1.22307 0.98042 1.00864 0.94702 0.92160 0.92734 0.94267 0.88497 0.92209 0.92294 0.86220 0.88701 0.93788 0.93078 0.90308 0.92524 0.92098 0.89853 0.91922 0.90442 0.92896 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.68 11.74 21.66 0.25 -46.43 16 2 C 0.02 1.04 3.43 84.93 0.29 1.34 16 3 Si 0.96 39.00 29.57 68.60 2.03 41.03 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.33 -15.90 6.39 84.04 0.54 -15.36 16 8 H 0.09 4.04 6.60 -2.91 -0.02 4.02 16 9 N -0.45 -22.07 2.28 -609.38 -1.39 -23.46 16 10 C 0.51 26.52 6.09 87.66 0.53 27.06 16 11 O -0.65 -36.92 15.39 -3.07 -0.05 -36.97 16 12 C -0.13 -5.93 1.80 -11.45 -0.02 -5.95 16 13 H 0.11 5.56 4.33 -2.39 -0.01 5.55 16 14 C -0.10 -4.03 4.89 30.71 0.15 -3.87 16 15 C -0.15 -4.70 6.14 30.68 0.19 -4.51 16 16 C 0.06 1.63 6.84 72.01 0.49 2.12 16 17 O -0.39 -14.64 10.77 -148.98 -1.60 -16.25 16 18 C 0.09 3.64 6.11 72.01 0.44 4.08 16 19 C 0.12 5.23 3.34 45.72 0.15 5.38 16 20 C -0.12 -4.10 6.01 31.67 0.19 -3.91 16 21 C -0.11 -3.45 6.54 31.89 0.21 -3.24 16 22 C -0.11 -3.41 6.83 31.67 0.22 -3.19 16 23 C -0.12 -4.99 6.28 31.32 0.20 -4.79 16 24 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 25 H 0.05 2.31 7.77 -2.39 -0.02 2.29 16 26 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.09 3.87 8.02 -2.39 -0.02 3.85 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.05 2.46 6.96 -2.38 -0.02 2.44 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.06 2.09 7.98 -2.39 -0.02 2.07 16 36 H 0.06 2.12 6.59 -2.39 -0.02 2.10 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.05 2.59 7.34 -2.38 -0.02 2.57 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -61.18 315.22 3.82 -57.36 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 1.00 Total: 29.56 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 3.58 Total: -4.86 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -1.13 Total: -69.89 kcal Atomic # 8 Polarization: -51.56 SS G_CDS: -1.65 Total: -53.21 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -61.18 3.82 -57.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.824 kcal (2) G-P(sol) polarization free energy of solvation -61.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds