Wall clock time and date at job start Mon Mar 30 2020 01:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48501 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46991 * 300.00121 * 3 2 1 6 6 H 1.48494 * 109.47533 * 60.00345 * 3 2 1 7 7 C 1.37883 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99907 * 172.83363 * 7 2 1 9 9 C 1.50695 * 119.99950 * 352.84037 * 7 2 1 10 10 C 1.52998 * 115.55296 * 84.77034 * 9 7 2 11 11 N 1.46895 * 109.47511 * 54.09064 * 10 9 7 12 12 C 1.48201 * 110.83030 * 67.19232 * 11 10 9 13 13 C 1.50443 * 112.71671 * 85.11268 * 12 11 10 14 14 C 1.54310 * 108.66687 * 93.49915 * 13 12 11 15 15 C 1.45881 * 112.17893 * 281.38214 * 14 13 12 16 16 C 1.54302 * 112.19313 * 61.12025 * 15 14 13 17 17 C 1.47997 * 111.00134 * 195.96712 * 11 10 9 18 18 H 1.09001 * 108.81339 * 312.20140 * 17 11 10 19 19 C 1.50697 * 108.81452 * 70.48240 * 17 11 10 20 20 O 1.20826 * 120.00369 * 3.29407 * 19 17 11 21 21 O 1.34232 * 119.99794 * 183.29018 * 19 17 11 22 22 C 1.52997 * 117.49636 * 230.44043 * 9 7 2 23 23 C 1.53002 * 117.49898 * 299.09846 * 9 7 2 24 24 H 0.97007 * 120.00406 * 5.01863 * 1 2 3 25 25 H 1.09005 * 109.46755 * 294.09074 * 10 9 7 26 26 H 1.09004 * 109.47217 * 174.09579 * 10 9 7 27 27 H 1.09012 * 109.12652 * 324.10209 * 12 11 10 28 28 H 1.08999 * 108.61227 * 205.76830 * 12 11 10 29 29 H 1.09001 * 109.63189 * 333.69610 * 13 12 11 30 30 H 1.09006 * 109.63097 * 213.30374 * 13 12 11 31 31 H 1.09000 * 108.93956 * 42.07725 * 14 13 12 32 32 H 1.08997 * 108.94342 * 160.68229 * 14 13 12 33 33 H 1.09006 * 108.93204 * 181.81368 * 15 14 13 34 34 H 1.08992 * 108.93441 * 300.41486 * 15 14 13 35 35 H 1.09000 * 109.63732 * 41.14911 * 16 15 14 36 36 H 1.08996 * 109.63445 * 161.55197 * 16 15 14 37 37 H 0.96701 * 116.99490 * 179.97438 * 21 19 17 38 38 H 1.09003 * 117.50092 * 214.99983 * 22 9 7 39 39 H 1.08999 * 117.50009 * 0.02562 * 22 9 7 40 40 H 1.09002 * 117.49433 * 359.97438 * 23 9 7 41 41 H 1.08994 * 117.50224 * 144.97426 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0781 -1.1977 -0.1172 9 6 1.2598 -2.4941 0.1615 10 6 0.6768 -3.0854 -1.1235 11 7 1.7397 -3.2150 -2.1292 12 6 2.7333 -4.2345 -1.7174 13 6 2.3284 -5.6305 -2.1057 14 6 2.9592 -5.9651 -3.4737 15 6 2.2253 -5.3620 -4.5808 16 6 2.2034 -3.8215 -4.4952 17 6 1.1699 -3.4146 -3.4804 18 1 0.4046 -4.1891 -3.4283 19 6 0.5260 -2.1289 -3.9312 20 8 0.5927 -1.1434 -3.2353 21 8 -0.1216 -2.0785 -5.1059 22 6 1.7693 -3.4726 1.2216 23 6 0.4694 -2.6990 1.4554 24 1 -0.4851 0.8369 -0.0735 25 1 -0.1050 -2.4279 -1.5038 26 1 0.2544 -4.0679 -0.9125 27 1 2.8599 -4.1934 -0.6354 28 1 3.6875 -4.0011 -2.1898 29 1 1.2425 -5.6899 -2.1788 30 1 2.6842 -6.3370 -1.3557 31 1 3.9859 -5.5994 -3.4889 32 1 2.9691 -7.0473 -3.6035 33 1 2.6949 -5.6575 -5.5191 34 1 1.2000 -5.7317 -4.5686 35 1 3.1833 -3.4579 -4.1859 36 1 1.9486 -3.4041 -5.4693 37 1 -0.5189 -1.2319 -5.3521 38 1 1.6891 -4.5376 1.0036 39 1 2.6428 -3.1759 1.8021 40 1 0.4884 -1.8935 2.1896 41 1 -0.4662 -3.2545 1.3912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:40 Heat of formation + Delta-G solvation = -53.991023 kcal Electronic energy + Delta-G solvation = -22306.078723 eV Core-core repulsion = 19187.033817 eV Total energy + Delta-G solvation = -3119.044906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12475 -38.39102 -36.47036 -35.42488 -33.35432 -32.12565 -31.57315 -27.68239 -25.55353 -25.22265 -23.74702 -21.97289 -20.96454 -20.52420 -19.16971 -18.58851 -17.41906 -16.44735 -15.85390 -15.48504 -14.93163 -14.42307 -14.33029 -13.97395 -13.93593 -13.50420 -13.21796 -12.66497 -12.59938 -12.22016 -11.95694 -11.48674 -11.37797 -10.97927 -10.91162 -10.80808 -10.75206 -10.68766 -10.56188 -10.40266 -10.31187 -9.99472 -9.94191 -9.51603 -9.27432 -8.61578 -8.14387 -7.90151 -7.32004 -5.72090 -3.70677 2.96164 3.40766 3.47074 3.54802 3.58057 4.45365 4.68206 4.80719 4.85559 5.16717 5.29662 5.37197 5.46582 5.58645 5.63749 5.73390 5.77618 5.84889 5.96800 6.09914 6.14195 6.20628 6.22531 6.25999 6.31536 6.44346 6.49870 6.56408 6.65707 6.75547 6.79799 7.03760 7.11217 7.19911 7.55355 7.65515 7.91033 8.02754 8.20378 8.63721 8.73588 9.22816 9.90919 11.38132 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.008435 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.849079 B = 3318.729225 C = 4143.464300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.081 3.919 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.460 4.460 8 H 0.055 0.945 9 C 0.065 3.935 10 C 0.106 3.894 11 N -0.505 5.505 12 C 0.061 3.939 13 C -0.151 4.151 14 C -0.118 4.118 15 C -0.115 4.115 16 C -0.113 4.113 17 C 0.113 3.887 18 H 0.061 0.939 19 C 0.450 3.550 20 O -0.441 6.441 21 O -0.536 6.536 22 C -0.221 4.221 23 C -0.161 4.161 24 H 0.252 0.748 25 H 0.081 0.919 26 H -0.006 1.006 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.402 0.598 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 -10.669 -9.038 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.121 4.121 3 Si 0.712 3.288 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.498 4.498 8 H 0.073 0.927 9 C 0.065 3.935 10 C -0.021 4.021 11 N -0.230 5.230 12 C -0.066 4.066 13 C -0.190 4.190 14 C -0.155 4.155 15 C -0.153 4.153 16 C -0.151 4.151 17 C 0.004 3.996 18 H 0.079 0.921 19 C 0.287 3.713 20 O -0.321 6.321 21 O -0.349 6.349 22 C -0.258 4.258 23 C -0.199 4.199 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.012 0.988 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.259 0.741 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.425 -10.189 -8.667 13.595 hybrid contribution -0.444 0.777 -0.188 0.915 sum 1.981 -9.412 -8.855 13.073 Atomic orbital electron populations 1.69945 1.05735 1.25751 1.50235 1.24761 0.94540 0.98168 0.94669 0.86698 0.80254 0.84948 0.76917 1.20088 1.21468 1.21695 1.20095 0.92574 0.88059 1.49110 0.92678 1.18733 0.96524 0.93573 0.84708 1.21724 0.92256 0.95213 0.92881 1.61226 1.17369 1.46085 0.98325 1.21990 0.95136 0.86974 1.02543 1.22005 1.00878 0.99380 0.96764 1.20577 1.00050 0.99942 0.94962 1.20551 1.01011 0.94977 0.98726 1.21428 0.99854 0.95820 0.98004 1.20670 0.96297 0.90562 0.92116 0.92123 1.23611 0.77065 0.92026 0.78567 1.90968 1.52885 1.35984 1.52268 1.84478 1.67577 1.42831 1.39988 1.23090 0.98362 0.95361 1.08994 1.22532 0.92029 1.01153 1.04194 0.93771 0.90106 0.98754 0.89080 0.91788 0.92150 0.91693 0.91889 0.92676 0.91974 0.92240 0.89863 0.90431 0.74075 0.92159 0.90583 0.90081 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 12.96 55.43 0.72 -25.22 16 2 C 0.08 2.32 5.39 -17.82 -0.10 2.22 16 3 Si 0.88 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 7 C -0.46 -12.83 8.50 -34.44 -0.29 -13.12 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.07 1.61 1.07 -155.66 -0.17 1.44 16 10 C 0.11 2.41 4.40 -3.83 -0.02 2.39 16 11 N -0.51 -10.02 3.70 -229.13 -0.85 -10.86 16 12 C 0.06 1.02 5.01 -4.38 -0.02 1.00 16 13 C -0.15 -2.03 5.53 -27.32 -0.15 -2.18 16 14 C -0.12 -1.32 5.30 -29.41 -0.16 -1.48 16 15 C -0.12 -1.28 5.30 -29.42 -0.16 -1.44 16 16 C -0.11 -1.54 5.12 -27.32 -0.14 -1.68 16 17 C 0.11 1.92 1.73 -69.53 -0.12 1.80 16 18 H 0.06 0.99 6.48 -51.93 -0.34 0.65 16 19 C 0.45 8.47 6.98 36.00 0.25 8.72 16 20 O -0.44 -10.60 15.73 -18.75 -0.29 -10.90 16 21 O -0.54 -7.84 12.91 -39.26 -0.51 -8.34 16 22 C -0.22 -4.78 8.12 -26.70 -0.22 -4.99 16 23 C -0.16 -3.85 9.51 -26.69 -0.25 -4.10 16 24 H 0.25 7.28 8.32 -40.82 -0.34 6.94 16 25 H 0.08 2.10 6.33 -51.93 -0.33 1.77 16 26 H -0.01 -0.12 7.58 -51.93 -0.39 -0.51 16 27 H 0.09 1.68 4.84 -51.92 -0.25 1.43 16 28 H 0.06 1.03 6.61 -51.93 -0.34 0.69 16 29 H 0.06 0.87 6.62 -51.93 -0.34 0.52 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.69 7.53 -51.93 -0.39 0.30 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.66 7.52 -51.93 -0.39 0.27 16 35 H 0.08 1.20 7.09 -51.93 -0.37 0.83 16 36 H 0.08 0.99 7.33 -51.93 -0.38 0.61 16 37 H 0.40 4.41 9.10 45.56 0.41 4.82 16 38 H 0.06 1.17 7.70 -51.93 -0.40 0.77 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -32.03 317.81 -8.29 -40.32 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.59 Total: 3.94 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.54 Total: -11.42 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.13 Total: -36.08 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.80 Total: -19.24 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.03 -8.29 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.669 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds