Wall clock time and date at job start Mon Mar 30 2020 01:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48501 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46991 * 300.00121 * 3 2 1 6 6 H 1.48494 * 109.47533 * 60.00345 * 3 2 1 7 7 C 1.37883 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99907 * 172.83363 * 7 2 1 9 9 C 1.50695 * 119.99950 * 352.84037 * 7 2 1 10 10 C 1.52998 * 115.55296 * 84.77034 * 9 7 2 11 11 N 1.46895 * 109.47511 * 54.09064 * 10 9 7 12 12 C 1.48201 * 110.83030 * 67.19232 * 11 10 9 13 13 C 1.50443 * 112.71671 * 85.11268 * 12 11 10 14 14 C 1.54310 * 108.66687 * 93.49915 * 13 12 11 15 15 C 1.45881 * 112.17893 * 281.38214 * 14 13 12 16 16 C 1.54302 * 112.19313 * 61.12025 * 15 14 13 17 17 C 1.47997 * 111.00134 * 195.96712 * 11 10 9 18 18 H 1.09001 * 108.81339 * 312.20140 * 17 11 10 19 19 C 1.50697 * 108.81452 * 70.48240 * 17 11 10 20 20 O 1.20826 * 120.00369 * 3.29407 * 19 17 11 21 21 O 1.34232 * 119.99794 * 183.29018 * 19 17 11 22 22 C 1.52997 * 117.49636 * 230.44043 * 9 7 2 23 23 C 1.53002 * 117.49898 * 299.09846 * 9 7 2 24 24 H 0.97007 * 120.00406 * 5.01863 * 1 2 3 25 25 H 1.09005 * 109.46755 * 294.09074 * 10 9 7 26 26 H 1.09004 * 109.47217 * 174.09579 * 10 9 7 27 27 H 1.09012 * 109.12652 * 324.10209 * 12 11 10 28 28 H 1.08999 * 108.61227 * 205.76830 * 12 11 10 29 29 H 1.09001 * 109.63189 * 333.69610 * 13 12 11 30 30 H 1.09006 * 109.63097 * 213.30374 * 13 12 11 31 31 H 1.09000 * 108.93956 * 42.07725 * 14 13 12 32 32 H 1.08997 * 108.94342 * 160.68229 * 14 13 12 33 33 H 1.09006 * 108.93204 * 181.81368 * 15 14 13 34 34 H 1.08992 * 108.93441 * 300.41486 * 15 14 13 35 35 H 1.09000 * 109.63732 * 41.14911 * 16 15 14 36 36 H 1.08996 * 109.63445 * 161.55197 * 16 15 14 37 37 H 0.96701 * 116.99490 * 179.97438 * 21 19 17 38 38 H 1.09003 * 117.50092 * 214.99983 * 22 9 7 39 39 H 1.08999 * 117.50009 * 0.02562 * 22 9 7 40 40 H 1.09002 * 117.49433 * 359.97438 * 23 9 7 41 41 H 1.08994 * 117.50224 * 144.97426 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0781 -1.1977 -0.1172 9 6 1.2598 -2.4941 0.1615 10 6 0.6768 -3.0854 -1.1235 11 7 1.7397 -3.2150 -2.1292 12 6 2.7333 -4.2345 -1.7174 13 6 2.3284 -5.6305 -2.1057 14 6 2.9592 -5.9651 -3.4737 15 6 2.2253 -5.3620 -4.5808 16 6 2.2034 -3.8215 -4.4952 17 6 1.1699 -3.4146 -3.4804 18 1 0.4046 -4.1891 -3.4283 19 6 0.5260 -2.1289 -3.9312 20 8 0.5927 -1.1434 -3.2353 21 8 -0.1216 -2.0785 -5.1059 22 6 1.7693 -3.4726 1.2216 23 6 0.4694 -2.6990 1.4554 24 1 -0.4851 0.8369 -0.0735 25 1 -0.1050 -2.4279 -1.5038 26 1 0.2544 -4.0679 -0.9125 27 1 2.8599 -4.1934 -0.6354 28 1 3.6875 -4.0011 -2.1898 29 1 1.2425 -5.6899 -2.1788 30 1 2.6842 -6.3370 -1.3557 31 1 3.9859 -5.5994 -3.4889 32 1 2.9691 -7.0473 -3.6035 33 1 2.6949 -5.6575 -5.5191 34 1 1.2000 -5.7317 -4.5686 35 1 3.1833 -3.4579 -4.1859 36 1 1.9486 -3.4041 -5.4693 37 1 -0.5189 -1.2319 -5.3521 38 1 1.6891 -4.5376 1.0036 39 1 2.6428 -3.1759 1.8021 40 1 0.4884 -1.8935 2.1896 41 1 -0.4662 -3.2545 1.3912 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:39 Heat of formation + Delta-G solvation = -74.946377 kcal Electronic energy + Delta-G solvation = -22306.987416 eV Core-core repulsion = 19187.033817 eV Total energy + Delta-G solvation = -3119.953598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51929 -39.76244 -38.12905 -36.86729 -34.70698 -33.77910 -33.24857 -29.09413 -27.31083 -26.78147 -25.25359 -23.37055 -22.71270 -21.58145 -20.76581 -20.18152 -18.82490 -17.99225 -17.54579 -16.89350 -16.44035 -16.37956 -15.71564 -15.46092 -15.30014 -14.91006 -14.60499 -14.14102 -13.95337 -13.61469 -13.24049 -13.13305 -13.07615 -12.87117 -12.59657 -12.43183 -12.29865 -12.19534 -12.07645 -11.93460 -11.59042 -11.41826 -11.22890 -11.17069 -10.88644 -10.61579 -10.21753 -9.81055 -8.78335 -7.90724 -5.92037 1.38521 1.42072 1.50040 1.50362 2.11347 2.54249 3.03802 3.40821 3.62126 3.81778 3.88213 4.12144 4.18683 4.24074 4.40639 4.46202 4.57093 4.63908 4.68795 4.73463 4.74408 4.86940 4.91616 4.99616 5.02200 5.11523 5.24257 5.29412 5.32474 5.35032 5.40933 5.46752 5.56442 5.67684 5.80644 5.86125 5.98079 6.37964 6.48613 6.67225 7.05477 7.27090 7.70636 9.18092 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.008435 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.849079 B = 3318.729225 C = 4143.464300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.036 3.964 3 Si 0.929 3.071 4 H -0.271 1.271 5 H -0.296 1.296 6 H -0.284 1.284 7 C -0.460 4.460 8 H 0.040 0.960 9 C 0.039 3.961 10 C 0.125 3.875 11 N -0.529 5.529 12 C 0.063 3.937 13 C -0.145 4.145 14 C -0.114 4.114 15 C -0.110 4.110 16 C -0.108 4.108 17 C 0.114 3.886 18 H 0.073 0.927 19 C 0.454 3.546 20 O -0.504 6.504 21 O -0.518 6.518 22 C -0.185 4.185 23 C -0.172 4.172 24 H 0.247 0.753 25 H 0.041 0.959 26 H 0.007 0.993 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.418 0.582 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 -13.006 -10.314 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.163 4.163 3 Si 0.758 3.242 4 H -0.195 1.195 5 H -0.224 1.224 6 H -0.211 1.211 7 C -0.499 4.499 8 H 0.058 0.942 9 C 0.039 3.961 10 C -0.003 4.003 11 N -0.254 5.254 12 C -0.063 4.063 13 C -0.184 4.184 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.146 4.146 17 C 0.004 3.996 18 H 0.090 0.910 19 C 0.294 3.706 20 O -0.389 6.389 21 O -0.332 6.332 22 C -0.222 4.222 23 C -0.211 4.211 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.279 0.721 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.418 -12.548 -9.968 16.386 hybrid contribution -0.746 1.499 0.149 1.681 sum 2.672 -11.049 -9.819 15.021 Atomic orbital electron populations 1.70052 1.06639 1.25731 1.51758 1.25320 0.95198 1.00666 0.95118 0.85957 0.79541 0.82166 0.76531 1.19503 1.22351 1.21067 1.20263 0.91991 0.89751 1.47855 0.94175 1.18799 0.97565 0.93703 0.86070 1.21287 0.91977 0.94544 0.92460 1.61045 1.17065 1.48357 0.98976 1.21988 0.94520 0.88423 1.01409 1.21934 1.00505 0.97189 0.98783 1.20557 0.99850 1.01416 0.93322 1.20537 1.01632 0.92544 0.99987 1.21445 0.97987 0.98062 0.97076 1.20848 0.97545 0.89693 0.91473 0.90992 1.24129 0.76034 0.91941 0.78509 1.90954 1.55473 1.38198 1.54240 1.84431 1.66719 1.44029 1.38029 1.23036 0.96741 0.96357 1.06109 1.22457 0.93705 1.01424 1.03477 0.94376 0.94083 0.97485 0.90943 0.91402 0.92952 0.90219 0.91560 0.90344 0.89463 0.91851 0.90851 0.89460 0.72125 0.89092 0.90617 0.92593 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.00 12.96 21.45 0.28 -54.72 16 2 C 0.04 2.12 5.39 84.66 0.46 2.58 16 3 Si 0.93 47.71 29.55 68.60 2.03 49.74 16 4 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 5 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 6 H -0.28 -14.19 7.11 99.48 0.71 -13.49 16 7 C -0.46 -26.15 8.50 25.60 0.22 -25.94 16 8 H 0.04 2.34 7.82 -2.91 -0.02 2.32 16 9 C 0.04 1.95 1.07 -52.93 -0.06 1.89 16 10 C 0.13 5.69 4.40 86.30 0.38 6.07 16 11 N -0.53 -20.72 3.70 -878.84 -3.25 -23.97 16 12 C 0.06 2.01 5.01 85.23 0.43 2.44 16 13 C -0.15 -3.44 5.53 30.21 0.17 -3.27 16 14 C -0.11 -2.08 5.30 28.86 0.15 -1.93 16 15 C -0.11 -2.01 5.30 28.85 0.15 -1.85 16 16 C -0.11 -2.67 5.12 30.21 0.15 -2.51 16 17 C 0.11 3.72 1.73 43.13 0.07 3.80 16 18 H 0.07 2.21 6.48 -2.39 -0.02 2.19 16 19 C 0.45 17.04 6.98 71.24 0.50 17.54 16 20 O -0.50 -24.98 15.73 21.96 0.35 -24.63 16 21 O -0.52 -14.52 12.91 -51.44 -0.66 -15.19 16 22 C -0.19 -7.79 8.12 30.62 0.25 -7.54 16 23 C -0.17 -8.29 9.51 30.62 0.29 -8.00 16 24 H 0.25 14.76 8.32 -92.70 -0.77 13.99 16 25 H 0.04 2.19 6.33 -2.38 -0.02 2.18 16 26 H 0.01 0.30 7.58 -2.38 -0.02 0.28 16 27 H 0.07 2.55 4.84 -2.38 -0.01 2.54 16 28 H 0.07 2.09 6.61 -2.39 -0.02 2.07 16 29 H 0.05 1.34 6.62 -2.39 -0.02 1.33 16 30 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.07 1.20 7.53 -2.39 -0.02 1.18 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.06 1.15 7.52 -2.39 -0.02 1.13 16 35 H 0.07 1.97 7.09 -2.39 -0.02 1.96 16 36 H 0.09 1.98 7.33 -2.39 -0.02 1.97 16 37 H 0.42 8.77 9.10 -74.06 -0.67 8.10 16 38 H 0.09 3.26 7.70 -2.39 -0.02 3.25 16 39 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -71.25 317.81 2.26 -69.00 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.36 Total: 16.50 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 3.16 Total: -16.73 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -2.97 Total: -78.69 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.32 Total: -39.82 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Total: -71.25 2.26 -69.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.949 kcal (2) G-P(sol) polarization free energy of solvation -71.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds