Wall clock time and date at job start Mon Mar 30 2020 01:32:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86802 * 120.00025 * 2 1
4 4 H 1.48502 * 109.47025 * 273.48409 * 3 2 1
5 5 H 1.48501 * 109.46944 * 33.48214 * 3 2 1
6 6 H 1.48495 * 109.47210 * 153.48382 * 3 2 1
7 7 C 1.37874 * 119.99981 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00027 * 350.00234 * 7 2 1
9 9 C 1.50705 * 119.99982 * 170.00951 * 7 2 1
10 10 C 1.53001 * 115.54544 * 295.41555 * 9 7 2
11 11 N 1.46906 * 109.47271 * 305.75787 * 10 9 7
12 12 C 1.47948 * 110.99915 * 301.27916 * 11 10 9
13 13 C 1.53919 * 113.33018 * 192.17603 * 12 11 10
14 14 C 1.50541 * 112.93952 * 317.76056 * 13 12 11
15 15 C 1.54522 * 108.85855 * 91.75170 * 14 13 12
16 16 C 1.45871 * 111.67330 * 282.74844 * 15 14 13
17 17 C 1.44295 * 111.00237 * 173.85795 * 11 10 9
18 18 H 1.08998 * 109.73257 * 101.62252 * 17 11 10
19 19 C 1.50705 * 109.69545 * 341.05848 * 17 11 10
20 20 O 1.20827 * 119.99778 * 240.48764 * 19 17 11
21 21 O 1.34232 * 119.99899 * 60.75669 * 19 17 11
22 22 C 1.53000 * 117.50203 * 81.08362 * 9 7 2
23 23 C 1.52994 * 117.50232 * 149.74912 * 9 7 2
24 24 H 0.97001 * 119.99691 * 359.97438 * 1 2 3
25 25 H 1.08999 * 109.47248 * 185.76181 * 10 9 7
26 26 H 1.09002 * 109.47669 * 65.75663 * 10 9 7
27 27 H 1.09001 * 108.71074 * 71.18517 * 12 11 10
28 28 H 1.08990 * 108.61313 * 313.10502 * 12 11 10
29 29 H 1.09000 * 108.79217 * 196.86411 * 13 12 11
30 30 H 1.09004 * 108.69571 * 78.58469 * 13 12 11
31 31 H 1.08999 * 109.56648 * 331.93571 * 14 13 12
32 32 H 1.08996 * 109.56911 * 211.56390 * 14 13 12
33 33 H 1.09000 * 109.03257 * 162.19003 * 15 14 13
34 34 H 1.09001 * 108.98107 * 43.28135 * 15 14 13
35 35 H 1.09002 * 108.85099 * 300.68350 * 16 15 14
36 36 H 1.09009 * 108.76118 * 182.26292 * 16 15 14
37 37 H 0.96697 * 116.99801 * 179.72790 * 21 19 17
38 38 H 1.08999 * 117.49847 * 215.00327 * 22 9 7
39 39 H 1.08996 * 117.49507 * 0.02562 * 22 9 7
40 40 H 1.09000 * 117.49765 * 359.97125 * 23 9 7
41 41 H 1.08996 * 117.50095 * 144.96862 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4230 2.0890 -1.3975
5 1 1.4853 2.6303 0.7724
6 1 3.5816 1.4201 0.6250
7 6 2.0045 -1.1940 0.0005
8 1 1.4768 -2.1221 0.1633
9 6 3.4944 -1.2040 -0.2259
10 6 3.9555 -0.7269 -1.6045
11 7 3.2670 -1.5010 -2.6462
12 6 3.5417 -2.9474 -2.5006
13 6 3.1008 -3.7773 -3.7196
14 6 1.7586 -3.3602 -4.2590
15 6 1.9711 -2.2954 -5.3585
16 6 2.2716 -0.9862 -4.7897
17 6 3.5682 -0.9837 -3.9591
18 1 4.3144 -1.6153 -4.4411
19 6 4.0937 0.4239 -3.8422
20 8 3.5054 1.3346 -4.3755
21 8 5.2182 0.6652 -3.1500
22 6 4.3930 -0.8823 0.9699
23 6 4.3033 -2.3169 0.4434
24 1 -0.4850 0.8401 0.0004
25 1 5.0320 -0.8702 -1.6974
26 1 3.7183 0.3306 -1.7213
27 1 3.0177 -3.3159 -1.6187
28 1 4.6128 -3.0849 -2.3529
29 1 3.0522 -4.8272 -3.4307
30 1 3.8460 -3.6646 -4.5071
31 1 1.1566 -2.9388 -3.4539
32 1 1.2502 -4.2262 -4.6827
33 1 1.0662 -2.2219 -5.9616
34 1 2.7992 -2.6048 -5.9962
35 1 1.4432 -0.6816 -4.1500
36 1 2.3722 -0.2659 -5.6017
37 1 5.5184 1.5834 -3.1064
38 1 5.3126 -0.3308 0.7745
39 1 3.9065 -0.6638 1.9205
40 1 3.7579 -3.0416 1.0480
41 1 5.1637 -2.7094 -0.0985
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000088256263.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:42
Heat of formation + Delta-G solvation = -53.426713 kcal
Electronic energy + Delta-G solvation = -22653.736612 eV
Core-core repulsion = 19534.716176 eV
Total energy + Delta-G solvation = -3119.020436 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.67259 -38.35150 -36.85680 -35.88530 -33.67251 -32.08658 -31.95244 -27.68053
-25.96616 -25.49420 -23.72727 -22.25202 -21.44515 -19.97968 -19.46929 -18.76479
-17.85630 -16.87510 -16.40766 -15.73728 -14.79153 -14.72922 -14.41439 -14.19719
-13.76436 -13.61275 -13.16310 -12.97427 -12.74289 -12.53190 -12.12341 -11.80452
-11.52716 -11.34580 -11.26465 -10.89834 -10.67626 -10.48144 -10.40075 -10.31214
-10.27536 -10.13280 -10.04331 -9.91713 -9.32997 -8.98900 -8.51601 -8.29049
-7.51638 -5.97956 -3.93076 2.39409 3.24139 3.35758 3.46036 3.49056
4.32541 4.53971 4.96105 4.98953 5.03420 5.19620 5.30072 5.34842
5.41539 5.59048 5.70206 5.82087 5.86133 5.95173 6.03374 6.08998
6.22388 6.28185 6.29691 6.31638 6.43958 6.50101 6.52758 6.55268
6.64365 6.72302 6.76680 6.82077 6.90216 7.09865 7.16073 7.61958
7.79851 7.91923 8.09605 8.62706 9.04823 9.68357 11.14686
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.016076 B = 0.009928 C = 0.008990
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1741.347405 B = 2819.507849 C = 3113.702391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.087 3.913
3 Si 0.856 3.144
4 H -0.281 1.281
5 H -0.295 1.295
6 H -0.251 1.251
7 C -0.459 4.459
8 H 0.074 0.926
9 C 0.006 3.994
10 C 0.094 3.906
11 N -0.504 5.504
12 C 0.071 3.929
13 C -0.119 4.119
14 C -0.118 4.118
15 C -0.108 4.108
16 C -0.104 4.104
17 C 0.105 3.895
18 H 0.076 0.924
19 C 0.481 3.519
20 O -0.510 6.510
21 O -0.516 6.516
22 C -0.195 4.195
23 C -0.186 4.186
24 H 0.261 0.739
25 H 0.031 0.969
26 H 0.064 0.936
27 H 0.093 0.907
28 H 0.023 0.977
29 H 0.064 0.936
30 H 0.049 0.951
31 H 0.088 0.912
32 H 0.054 0.946
33 H 0.062 0.938
34 H 0.050 0.950
35 H 0.087 0.913
36 H 0.066 0.934
37 H 0.399 0.601
38 H 0.065 0.935
39 H 0.085 0.915
40 H 0.083 0.917
41 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.277 -4.340 -8.420 13.259
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.115 4.115
3 Si 0.684 3.316
4 H -0.208 1.208
5 H -0.222 1.222
6 H -0.175 1.175
7 C -0.497 4.497
8 H 0.092 0.908
9 C 0.005 3.995
10 C -0.033 4.033
11 N -0.230 5.230
12 C -0.056 4.056
13 C -0.157 4.157
14 C -0.155 4.155
15 C -0.146 4.146
16 C -0.142 4.142
17 C -0.005 4.005
18 H 0.094 0.906
19 C 0.323 3.677
20 O -0.396 6.396
21 O -0.328 6.328
22 C -0.233 4.233
23 C -0.223 4.223
24 H 0.071 0.929
25 H 0.049 0.951
26 H 0.082 0.918
27 H 0.112 0.888
28 H 0.042 0.958
29 H 0.083 0.917
30 H 0.067 0.933
31 H 0.107 0.893
32 H 0.073 0.927
33 H 0.081 0.919
34 H 0.069 0.931
35 H 0.106 0.894
36 H 0.084 0.916
37 H 0.258 0.742
38 H 0.084 0.916
39 H 0.104 0.896
40 H 0.102 0.898
41 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 8.332 -4.318 -8.545 12.692
hybrid contribution 1.521 1.625 -0.042 2.226
sum 9.853 -2.693 -8.587 13.344
Atomic orbital electron populations
1.69908 1.06245 1.26639 1.50543 1.24752 0.94260 0.98413 0.94089
0.87181 0.81702 0.84606 0.78117 1.20778 1.22169 1.17525 1.20039
0.87297 0.94402 1.47928 0.90759 1.19453 0.94367 0.97728 0.87948
1.22171 0.93333 0.96097 0.91682 1.60868 1.59806 1.03087 0.99268
1.22425 0.97879 0.86193 0.99096 1.21437 0.97567 0.99309 0.97363
1.21365 0.97413 0.97732 0.98996 1.20511 1.00937 0.95359 0.97758
1.20427 0.96918 0.97825 0.99024 1.21345 0.97252 0.87550 0.94360
0.90611 1.23710 0.77506 0.92880 0.73653 1.90678 1.57567 1.46688
1.44695 1.84851 1.42668 1.36643 1.68668 1.23063 1.01472 0.97825
1.00986 1.22842 1.02043 0.91875 1.05589 0.92915 0.95088 0.91842
0.88844 0.95833 0.91731 0.93261 0.89329 0.92734 0.91898 0.93137
0.89409 0.91556 0.74210 0.91626 0.89641 0.89849 0.91380
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16
2 C 0.09 2.47 5.46 -17.82 -0.10 2.38 16
3 Si 0.86 21.80 25.14 -169.99 -4.27 17.52 16
4 H -0.28 -7.37 7.02 56.52 0.40 -6.98 16
5 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16
6 H -0.25 -5.96 5.65 56.52 0.32 -5.64 16
7 C -0.46 -12.37 8.94 -34.44 -0.31 -12.68 16
8 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16
9 C 0.01 0.14 0.18 -155.66 -0.03 0.11 16
10 C 0.09 1.94 2.99 -3.82 -0.01 1.93 16
11 N -0.50 -9.65 3.73 -227.94 -0.85 -10.50 16
12 C 0.07 1.17 4.36 -2.77 -0.01 1.16 16
13 C -0.12 -1.61 5.28 -27.48 -0.15 -1.76 16
14 C -0.12 -1.67 5.63 -27.16 -0.15 -1.82 16
15 C -0.11 -1.46 5.35 -29.31 -0.16 -1.62 16
16 C -0.10 -1.71 4.45 -29.59 -0.13 -1.84 16
17 C 0.10 1.79 2.47 -69.74 -0.17 1.61 16
18 H 0.08 1.12 6.79 -51.93 -0.35 0.76 16
19 C 0.48 8.71 6.23 36.01 0.22 8.94 16
20 O -0.51 -10.50 16.33 -18.75 -0.31 -10.80 16
21 O -0.52 -7.97 10.06 -39.26 -0.40 -8.36 16
22 C -0.20 -4.06 7.92 -26.69 -0.21 -4.28 16
23 C -0.19 -3.62 8.55 -26.69 -0.23 -3.85 16
24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
25 H 0.03 0.60 6.89 -51.93 -0.36 0.24 16
26 H 0.06 1.44 3.16 -51.93 -0.16 1.27 16
27 H 0.09 1.75 6.82 -51.93 -0.35 1.40 16
28 H 0.02 0.37 7.81 -51.93 -0.41 -0.04 16
29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
30 H 0.05 0.60 6.65 -51.93 -0.35 0.26 16
31 H 0.09 1.56 7.78 -51.93 -0.40 1.16 16
32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
34 H 0.05 0.60 7.58 -51.93 -0.39 0.20 16
35 H 0.09 1.73 8.08 -51.93 -0.42 1.31 16
36 H 0.07 1.06 7.25 -51.92 -0.38 0.69 16
37 H 0.40 4.49 9.10 45.56 0.41 4.91 16
38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
39 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16
40 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16
41 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16
LS Contribution 307.92 15.07 4.64 4.64
Total: -1.00 -31.54 307.92 -7.60 -39.13
By element:
Atomic # 1 Polarization: 12.30 SS G_CDS: -5.75 Total: 6.54 kcal
Atomic # 6 Polarization: -10.28 SS G_CDS: -1.43 Total: -11.71 kcal
Atomic # 7 Polarization: -36.89 SS G_CDS: -0.08 Total: -36.96 kcal
Atomic # 8 Polarization: -18.46 SS G_CDS: -0.70 Total: -19.16 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -4.27 Total: 17.52 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -31.54 -7.60 -39.13 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000088256263.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.297 kcal
(2) G-P(sol) polarization free energy of solvation -31.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.832 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds