Wall clock time and date at job start Mon Mar 30 2020 01:32:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86802 * 120.00025 * 2 1
4 4 H 1.48502 * 109.47025 * 273.48409 * 3 2 1
5 5 H 1.48501 * 109.46944 * 33.48214 * 3 2 1
6 6 H 1.48495 * 109.47210 * 153.48382 * 3 2 1
7 7 C 1.37874 * 119.99981 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00027 * 350.00234 * 7 2 1
9 9 C 1.50705 * 119.99982 * 170.00951 * 7 2 1
10 10 C 1.53001 * 115.54544 * 295.41555 * 9 7 2
11 11 N 1.46906 * 109.47271 * 305.75787 * 10 9 7
12 12 C 1.47948 * 110.99915 * 301.27916 * 11 10 9
13 13 C 1.53919 * 113.33018 * 192.17603 * 12 11 10
14 14 C 1.50541 * 112.93952 * 317.76056 * 13 12 11
15 15 C 1.54522 * 108.85855 * 91.75170 * 14 13 12
16 16 C 1.45871 * 111.67330 * 282.74844 * 15 14 13
17 17 C 1.44295 * 111.00237 * 173.85795 * 11 10 9
18 18 H 1.08998 * 109.73257 * 101.62252 * 17 11 10
19 19 C 1.50705 * 109.69545 * 341.05848 * 17 11 10
20 20 O 1.20827 * 119.99778 * 240.48764 * 19 17 11
21 21 O 1.34232 * 119.99899 * 60.75669 * 19 17 11
22 22 C 1.53000 * 117.50203 * 81.08362 * 9 7 2
23 23 C 1.52994 * 117.50232 * 149.74912 * 9 7 2
24 24 H 0.97001 * 119.99691 * 359.97438 * 1 2 3
25 25 H 1.08999 * 109.47248 * 185.76181 * 10 9 7
26 26 H 1.09002 * 109.47669 * 65.75663 * 10 9 7
27 27 H 1.09001 * 108.71074 * 71.18517 * 12 11 10
28 28 H 1.08990 * 108.61313 * 313.10502 * 12 11 10
29 29 H 1.09000 * 108.79217 * 196.86411 * 13 12 11
30 30 H 1.09004 * 108.69571 * 78.58469 * 13 12 11
31 31 H 1.08999 * 109.56648 * 331.93571 * 14 13 12
32 32 H 1.08996 * 109.56911 * 211.56390 * 14 13 12
33 33 H 1.09000 * 109.03257 * 162.19003 * 15 14 13
34 34 H 1.09001 * 108.98107 * 43.28135 * 15 14 13
35 35 H 1.09002 * 108.85099 * 300.68350 * 16 15 14
36 36 H 1.09009 * 108.76118 * 182.26292 * 16 15 14
37 37 H 0.96697 * 116.99801 * 179.72790 * 21 19 17
38 38 H 1.08999 * 117.49847 * 215.00327 * 22 9 7
39 39 H 1.08996 * 117.49507 * 0.02562 * 22 9 7
40 40 H 1.09000 * 117.49765 * 359.97125 * 23 9 7
41 41 H 1.08996 * 117.50095 * 144.96862 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4230 2.0890 -1.3975
5 1 1.4853 2.6303 0.7724
6 1 3.5816 1.4201 0.6250
7 6 2.0045 -1.1940 0.0005
8 1 1.4768 -2.1221 0.1633
9 6 3.4944 -1.2040 -0.2259
10 6 3.9555 -0.7269 -1.6045
11 7 3.2670 -1.5010 -2.6462
12 6 3.5417 -2.9474 -2.5006
13 6 3.1008 -3.7773 -3.7196
14 6 1.7586 -3.3602 -4.2590
15 6 1.9711 -2.2954 -5.3585
16 6 2.2716 -0.9862 -4.7897
17 6 3.5682 -0.9837 -3.9591
18 1 4.3144 -1.6153 -4.4411
19 6 4.0937 0.4239 -3.8422
20 8 3.5054 1.3346 -4.3755
21 8 5.2182 0.6652 -3.1500
22 6 4.3930 -0.8823 0.9699
23 6 4.3033 -2.3169 0.4434
24 1 -0.4850 0.8401 0.0004
25 1 5.0320 -0.8702 -1.6974
26 1 3.7183 0.3306 -1.7213
27 1 3.0177 -3.3159 -1.6187
28 1 4.6128 -3.0849 -2.3529
29 1 3.0522 -4.8272 -3.4307
30 1 3.8460 -3.6646 -4.5071
31 1 1.1566 -2.9388 -3.4539
32 1 1.2502 -4.2262 -4.6827
33 1 1.0662 -2.2219 -5.9616
34 1 2.7992 -2.6048 -5.9962
35 1 1.4432 -0.6816 -4.1500
36 1 2.3722 -0.2659 -5.6017
37 1 5.5184 1.5834 -3.1064
38 1 5.3126 -0.3308 0.7745
39 1 3.9065 -0.6638 1.9205
40 1 3.7579 -3.0416 1.0480
41 1 5.1637 -2.7094 -0.0985
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000088256263.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:42
Heat of formation + Delta-G solvation = -75.377402 kcal
Electronic energy + Delta-G solvation = -22654.688466 eV
Core-core repulsion = 19534.716176 eV
Total energy + Delta-G solvation = -3119.972289 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.03762 -39.74565 -38.36795 -37.26473 -35.02031 -34.13243 -33.29272 -29.15536
-27.52417 -27.20636 -25.20625 -23.59071 -22.99170 -21.22845 -20.96166 -20.37616
-19.18813 -18.55140 -17.81372 -17.44228 -16.65211 -15.97928 -15.72417 -15.62428
-15.32728 -14.95614 -14.79848 -14.45410 -14.31661 -14.05156 -13.62937 -13.33461
-12.98253 -12.88377 -12.76205 -12.59364 -12.34549 -12.11258 -11.97408 -11.70948
-11.58557 -11.47411 -11.31922 -11.30392 -11.08129 -10.87762 -10.44864 -10.16314
-8.89790 -8.19581 -6.15208 1.01524 1.29676 1.34480 1.44949 2.00526
2.41014 2.88887 3.17987 3.44250 3.68433 3.85986 3.95911 4.14726
4.18692 4.29195 4.36645 4.39037 4.51513 4.58020 4.69431 4.75172
4.78958 4.84982 4.93734 4.97688 5.12503 5.13387 5.16642 5.34558
5.36473 5.39834 5.42766 5.47243 5.54333 5.57050 5.70297 5.80456
6.23861 6.42291 6.46661 6.84479 6.86494 7.48305 8.96916
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.016076 B = 0.009928 C = 0.008990
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1741.347405 B = 2819.507849 C = 3113.702391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C 0.030 3.970
3 Si 0.912 3.088
4 H -0.294 1.294
5 H -0.304 1.304
6 H -0.218 1.218
7 C -0.440 4.440
8 H 0.031 0.969
9 C -0.023 4.023
10 C 0.104 3.896
11 N -0.532 5.532
12 C 0.072 3.928
13 C -0.114 4.114
14 C -0.115 4.115
15 C -0.105 4.105
16 C -0.096 4.096
17 C 0.104 3.896
18 H 0.112 0.888
19 C 0.480 3.520
20 O -0.545 6.545
21 O -0.508 6.508
22 C -0.192 4.192
23 C -0.159 4.159
24 H 0.257 0.743
25 H 0.056 0.944
26 H 0.041 0.959
27 H 0.061 0.939
28 H 0.043 0.957
29 H 0.082 0.918
30 H 0.076 0.924
31 H 0.040 0.960
32 H 0.076 0.924
33 H 0.070 0.930
34 H 0.083 0.917
35 H 0.039 0.961
36 H 0.068 0.932
37 H 0.419 0.581
38 H 0.092 0.908
39 H 0.072 0.928
40 H 0.076 0.924
41 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.813 -5.370 -9.591 16.881
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.590 5.590
2 C -0.166 4.166
3 Si 0.740 3.260
4 H -0.222 1.222
5 H -0.232 1.232
6 H -0.140 1.140
7 C -0.478 4.478
8 H 0.049 0.951
9 C -0.025 4.025
10 C -0.023 4.023
11 N -0.259 5.259
12 C -0.054 4.054
13 C -0.152 4.152
14 C -0.153 4.153
15 C -0.142 4.142
16 C -0.135 4.135
17 C -0.006 4.006
18 H 0.129 0.871
19 C 0.323 3.677
20 O -0.434 6.434
21 O -0.322 6.322
22 C -0.230 4.230
23 C -0.196 4.196
24 H 0.066 0.934
25 H 0.074 0.926
26 H 0.059 0.941
27 H 0.080 0.920
28 H 0.061 0.939
29 H 0.101 0.899
30 H 0.095 0.905
31 H 0.059 0.941
32 H 0.094 0.906
33 H 0.088 0.912
34 H 0.101 0.899
35 H 0.058 0.942
36 H 0.086 0.914
37 H 0.280 0.720
38 H 0.111 0.889
39 H 0.091 0.909
40 H 0.094 0.906
41 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 11.922 -5.364 -9.691 16.274
hybrid contribution 0.403 1.857 0.353 1.933
sum 12.325 -3.507 -9.338 15.856
Atomic orbital electron populations
1.70059 1.08066 1.26981 1.53875 1.25448 0.94733 1.01705 0.94741
0.86294 0.81928 0.80578 0.77219 1.22172 1.23218 1.13983 1.20188
0.90099 0.92215 1.45286 0.95085 1.19371 0.91759 1.01436 0.89892
1.21975 0.94619 0.94961 0.90708 1.60708 1.60844 1.04431 0.99945
1.22412 0.98579 0.84912 0.99501 1.21431 0.97423 0.99557 0.96777
1.21312 0.97615 0.98477 0.97893 1.20507 1.02581 0.93408 0.97738
1.20380 0.95335 0.99607 0.98169 1.21423 0.98063 0.87561 0.93510
0.87091 1.23956 0.77641 0.92973 0.73100 1.90668 1.58668 1.47718
1.46335 1.84759 1.41377 1.38403 1.67651 1.23089 1.01539 0.99218
0.99180 1.22853 1.01777 0.90990 1.04009 0.93446 0.92604 0.94109
0.92011 0.93891 0.89947 0.90544 0.94075 0.90566 0.91153 0.89891
0.94232 0.91364 0.72015 0.88938 0.90921 0.90559 0.88046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16
2 C 0.03 1.78 5.46 84.65 0.46 2.24 16
3 Si 0.91 46.03 25.14 68.60 1.72 47.75 16
4 H -0.29 -15.40 7.02 99.48 0.70 -14.70 16
5 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16
6 H -0.22 -9.63 5.65 99.48 0.56 -9.07 16
7 C -0.44 -24.38 8.94 25.60 0.23 -24.15 16
8 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16
9 C -0.02 -1.01 0.18 -52.93 -0.01 -1.02 16
10 C 0.10 4.07 2.99 86.30 0.26 4.33 16
11 N -0.53 -19.69 3.73 -875.08 -3.26 -22.95 16
12 C 0.07 2.23 4.36 86.41 0.38 2.61 16
13 C -0.11 -2.72 5.28 30.11 0.16 -2.56 16
14 C -0.12 -3.11 5.63 30.32 0.17 -2.94 16
15 C -0.11 -2.62 5.35 28.93 0.15 -2.47 16
16 C -0.10 -3.13 4.45 28.74 0.13 -3.00 16
17 C 0.10 3.32 2.47 44.99 0.11 3.43 16
18 H 0.11 2.76 6.79 -2.39 -0.02 2.74 16
19 C 0.48 16.54 6.23 71.24 0.44 16.98 16
20 O -0.54 -22.16 16.33 21.96 0.36 -21.80 16
21 O -0.51 -14.06 10.06 -51.44 -0.52 -14.58 16
22 C -0.19 -7.41 7.92 30.62 0.24 -7.16 16
23 C -0.16 -5.72 8.55 30.62 0.26 -5.46 16
24 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16
25 H 0.06 1.90 6.89 -2.39 -0.02 1.88 16
26 H 0.04 1.78 3.16 -2.39 -0.01 1.77 16
27 H 0.06 2.28 6.82 -2.39 -0.02 2.27 16
28 H 0.04 1.16 7.81 -2.39 -0.02 1.14 16
29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
30 H 0.08 1.45 6.65 -2.38 -0.02 1.44 16
31 H 0.04 1.50 7.78 -2.39 -0.02 1.48 16
32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16
34 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16
35 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16
36 H 0.07 2.15 7.25 -2.38 -0.02 2.14 16
37 H 0.42 8.13 9.10 -74.06 -0.67 7.45 16
38 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16
39 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16
40 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16
41 H 0.10 3.00 7.96 -2.39 -0.02 2.99 16
Total: -1.00 -72.51 307.92 1.79 -70.72
By element:
Atomic # 1 Polarization: 20.39 SS G_CDS: 0.20 Total: 20.59 kcal
Atomic # 6 Polarization: -22.17 SS G_CDS: 2.99 Total: -19.18 kcal
Atomic # 7 Polarization: -80.53 SS G_CDS: -2.96 Total: -83.49 kcal
Atomic # 8 Polarization: -36.22 SS G_CDS: -0.16 Total: -36.38 kcal
Atomic # 14 Polarization: 46.03 SS G_CDS: 1.72 Total: 47.75 kcal
Total: -72.51 1.79 -70.72 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000088256263.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.661 kcal
(2) G-P(sol) polarization free energy of solvation -72.508 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.169 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.716 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.377 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds