Wall clock time and date at job start Mon Mar 30 2020 00:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47575 * 2 1 4 4 C 1.53007 * 109.47188 * 120.00122 * 2 1 3 5 5 C 1.52996 * 109.47160 * 174.99891 * 4 2 1 6 6 N 1.46903 * 109.46945 * 179.97438 * 5 4 2 7 7 C 1.46893 * 111.00088 * 170.00169 * 6 5 4 8 8 C 1.50701 * 109.47069 * 294.07346 * 7 6 5 9 9 H 1.08002 * 119.99955 * 354.36873 * 8 7 6 10 10 C 1.37880 * 120.00034 * 174.36803 * 8 7 6 11 11 N 1.31513 * 119.99994 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99910 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47051 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.46968 * 120.00062 * 12 10 8 15 15 H 1.48500 * 109.46853 * 239.99854 * 12 10 8 16 16 C 1.46898 * 110.99891 * 293.95613 * 6 5 4 17 17 C 1.50705 * 109.47382 * 164.46033 * 16 6 5 18 18 C 1.38424 * 122.53691 * 96.43038 * 17 16 6 19 19 C 1.33388 * 114.91512 * 179.97438 * 18 17 16 20 20 S 1.75884 * 109.59937 * 0.02562 * 19 18 17 21 21 C 1.33383 * 122.53968 * 276.41583 * 17 16 6 22 22 H 1.09002 * 109.46832 * 299.99972 * 1 2 3 23 23 H 1.08999 * 109.46791 * 59.99920 * 1 2 3 24 24 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47291 * 239.99458 * 2 1 3 26 26 H 1.09004 * 109.46839 * 300.00214 * 3 2 1 27 27 H 1.09003 * 109.46830 * 59.99622 * 3 2 1 28 28 H 1.08994 * 109.47172 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47163 * 54.99516 * 4 2 1 30 30 H 1.08998 * 109.46737 * 294.99777 * 4 2 1 31 31 H 1.08996 * 109.47361 * 60.00193 * 5 4 2 32 32 H 1.08998 * 109.47202 * 299.99601 * 5 4 2 33 33 H 1.09005 * 109.47323 * 54.07001 * 7 6 5 34 34 H 1.09003 * 109.47515 * 174.07352 * 7 6 5 35 35 H 0.97005 * 119.99857 * 179.97438 * 11 10 8 36 36 H 1.08994 * 109.47508 * 44.45791 * 16 6 5 37 37 H 1.09005 * 109.47058 * 284.45641 * 16 6 5 38 38 H 1.08000 * 122.54413 * 359.71708 * 18 17 16 39 39 H 1.08007 * 125.20315 * 179.97438 * 19 18 17 40 40 H 1.08008 * 125.20220 * 0.05194 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 7 4.0545 -1.5231 2.3877 7 6 5.4789 -1.8579 2.2579 8 6 5.6582 -2.8720 1.1576 9 1 4.7939 -3.2998 0.6713 10 6 6.9257 -3.2539 0.7719 11 7 7.9781 -2.7327 1.3637 12 14 7.1479 -4.5115 -0.5914 13 1 5.8168 -4.9417 -1.0898 14 1 7.9210 -3.9038 -1.7042 15 1 7.8826 -5.6891 -0.0635 16 6 3.8100 -0.7217 3.5943 17 6 3.9632 -1.5920 4.8151 18 6 5.1381 -1.6511 5.5446 19 6 5.1057 -2.4705 6.5967 20 16 3.5221 -3.2282 6.7058 21 6 2.9768 -2.3635 5.2746 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6053 -1.7199 1.2952 30 1 1.7517 -0.1583 2.1370 31 1 3.9995 0.1674 1.1421 32 1 3.8532 -1.3941 0.3003 33 1 6.0434 -0.9571 2.0171 34 1 5.8416 -2.2737 3.1979 35 1 8.8698 -3.0016 1.0925 36 1 2.7990 -0.3157 3.5622 37 1 4.5289 0.0965 3.6390 38 1 6.0159 -1.0805 5.2796 39 1 5.9266 -2.6429 7.2771 40 1 1.9939 -2.4453 4.8345 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:11 Heat of formation + Delta-G solvation = 17.376845 kcal Electronic energy + Delta-G solvation = -18449.219228 eV Core-core repulsion = 15776.021936 eV Total energy + Delta-G solvation = -2673.197292 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.44628 -36.87163 -34.96759 -32.49631 -29.80972 -28.80353 -27.13883 -26.99077 -24.99174 -22.73752 -22.44505 -20.04258 -19.54094 -18.26013 -17.19007 -16.31481 -15.31559 -14.98350 -14.58147 -14.46166 -13.99860 -13.40971 -13.16921 -13.01424 -12.54466 -12.40698 -12.21442 -12.15955 -11.95239 -11.75699 -11.50290 -11.29019 -11.03966 -10.82334 -10.74106 -10.61114 -10.41326 -10.35688 -10.13727 -9.98103 -9.69739 -9.13628 -8.42081 -8.31139 -7.94872 -7.17522 -5.99918 -4.00044 1.46922 2.09445 2.38758 3.19313 3.31831 3.39453 3.44412 4.45449 4.89525 5.10941 5.18993 5.26703 5.35957 5.41834 5.55296 5.66420 5.71644 5.79831 5.88819 5.91150 5.92945 6.05662 6.06293 6.10734 6.14959 6.23242 6.32434 6.44143 6.50947 6.54152 6.77922 6.85176 6.87591 6.99423 7.38234 7.40566 7.84927 8.15232 8.25044 8.59583 9.08410 9.63719 11.10926 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.009084 B = 0.008329 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.573338 B = 3360.888351 C = 5791.739702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.111 4.111 5 C 0.064 3.936 6 N -0.531 5.531 7 C 0.191 3.809 8 C -0.503 4.503 9 H 0.063 0.937 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.893 3.107 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.107 3.893 17 C -0.077 4.077 18 C -0.113 4.113 19 C -0.216 4.216 20 S 0.054 5.946 21 C -0.191 4.191 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.084 0.916 33 H -0.008 1.008 34 H 0.034 0.966 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.138 0.862 39 H 0.158 0.842 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.263 5.273 5.139 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.149 4.149 5 C -0.065 4.065 6 N -0.256 5.256 7 C 0.066 3.934 8 C -0.542 4.542 9 H 0.081 0.919 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.023 4.023 17 C -0.090 4.090 18 C -0.144 4.144 19 C -0.351 4.351 20 S 0.316 5.684 21 C -0.327 4.327 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.103 0.897 33 H 0.010 0.990 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.155 0.845 39 H 0.176 0.824 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.979 3.777 6.182 13.999 hybrid contribution 1.540 0.946 -1.774 2.532 sum -10.439 4.724 4.408 12.276 Atomic orbital electron populations 1.21821 0.95799 1.01428 1.01074 1.21104 0.95060 0.96274 0.99247 1.21885 1.01642 0.96086 1.00881 1.21712 0.96632 1.00222 0.96338 1.22036 0.92971 0.96322 0.95124 1.62140 1.22481 1.41213 0.99722 1.19771 0.80673 0.95215 0.97706 1.21206 0.91981 1.22958 1.18035 0.91905 1.24970 0.95979 0.96723 0.96915 1.69967 0.97980 1.43722 1.42201 0.86508 0.78159 0.81333 0.81846 1.19660 1.21162 1.21070 1.20751 1.00231 0.92701 0.88642 1.18872 0.92686 0.99921 0.97496 1.20185 0.98843 1.00585 0.94767 1.25396 1.00519 1.04491 1.04681 1.83931 1.08008 1.47800 1.28648 1.25247 1.03927 1.03054 1.00459 0.93071 0.93232 0.92830 0.91165 0.93365 0.93146 0.92168 0.91566 0.92755 0.96123 0.89721 0.99028 0.94819 0.93100 0.91019 0.95031 0.84453 0.82401 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.10 -1.27 2.92 -90.62 -0.26 -1.53 16 3 C -0.15 -1.80 8.95 37.16 0.33 -1.47 16 4 C -0.11 -1.67 4.65 -26.73 -0.12 -1.80 16 5 C 0.06 1.20 4.57 -3.82 -0.02 1.18 16 6 N -0.53 -11.24 4.45 -237.52 -1.06 -12.30 16 7 C 0.19 4.95 4.57 -4.98 -0.02 4.92 16 8 C -0.50 -14.14 8.25 -34.44 -0.28 -14.42 16 9 H 0.06 1.77 7.39 -52.49 -0.39 1.38 16 10 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 12 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 C 0.11 1.93 5.10 -4.97 -0.03 1.91 16 17 C -0.08 -1.37 4.76 -106.25 -0.51 -1.88 16 18 C -0.11 -1.98 8.74 -41.21 -0.36 -2.34 16 19 C -0.22 -3.37 11.23 29.04 0.33 -3.04 16 20 S 0.05 0.79 23.34 -107.50 -2.51 -1.72 16 21 C -0.19 -3.08 10.99 29.04 0.32 -2.76 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.81 6.56 -51.93 -0.34 0.46 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.77 6.29 -51.93 -0.33 0.45 16 31 H 0.02 0.39 6.54 -51.93 -0.34 0.05 16 32 H 0.08 1.79 6.75 -51.93 -0.35 1.44 16 33 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 34 H 0.03 0.93 6.28 -51.93 -0.33 0.60 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.07 1.13 5.95 -51.93 -0.31 0.82 16 37 H 0.03 0.58 8.02 -51.93 -0.42 0.16 16 38 H 0.14 2.42 8.06 -52.49 -0.42 1.99 16 39 H 0.16 2.07 8.06 -52.48 -0.42 1.65 16 40 H 0.16 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -29.59 332.69 -9.80 -39.39 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.58 Total: -0.18 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -0.38 Total: -21.00 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.32 Total: -38.32 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.59 -9.80 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.768 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds