Wall clock time and date at job start Mon Mar 30 2020 00:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47575 * 2 1 4 4 C 1.53007 * 109.47188 * 120.00122 * 2 1 3 5 5 C 1.52996 * 109.47160 * 174.99891 * 4 2 1 6 6 N 1.46903 * 109.46945 * 179.97438 * 5 4 2 7 7 C 1.46893 * 111.00088 * 170.00169 * 6 5 4 8 8 C 1.50701 * 109.47069 * 294.07346 * 7 6 5 9 9 H 1.08002 * 119.99955 * 354.36873 * 8 7 6 10 10 C 1.37880 * 120.00034 * 174.36803 * 8 7 6 11 11 N 1.31513 * 119.99994 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99910 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47051 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.46968 * 120.00062 * 12 10 8 15 15 H 1.48500 * 109.46853 * 239.99854 * 12 10 8 16 16 C 1.46898 * 110.99891 * 293.95613 * 6 5 4 17 17 C 1.50705 * 109.47382 * 164.46033 * 16 6 5 18 18 C 1.38424 * 122.53691 * 96.43038 * 17 16 6 19 19 C 1.33388 * 114.91512 * 179.97438 * 18 17 16 20 20 S 1.75884 * 109.59937 * 0.02562 * 19 18 17 21 21 C 1.33383 * 122.53968 * 276.41583 * 17 16 6 22 22 H 1.09002 * 109.46832 * 299.99972 * 1 2 3 23 23 H 1.08999 * 109.46791 * 59.99920 * 1 2 3 24 24 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47291 * 239.99458 * 2 1 3 26 26 H 1.09004 * 109.46839 * 300.00214 * 3 2 1 27 27 H 1.09003 * 109.46830 * 59.99622 * 3 2 1 28 28 H 1.08994 * 109.47172 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47163 * 54.99516 * 4 2 1 30 30 H 1.08998 * 109.46737 * 294.99777 * 4 2 1 31 31 H 1.08996 * 109.47361 * 60.00193 * 5 4 2 32 32 H 1.08998 * 109.47202 * 299.99601 * 5 4 2 33 33 H 1.09005 * 109.47323 * 54.07001 * 7 6 5 34 34 H 1.09003 * 109.47515 * 174.07352 * 7 6 5 35 35 H 0.97005 * 119.99857 * 179.97438 * 11 10 8 36 36 H 1.08994 * 109.47508 * 44.45791 * 16 6 5 37 37 H 1.09005 * 109.47058 * 284.45641 * 16 6 5 38 38 H 1.08000 * 122.54413 * 359.71708 * 18 17 16 39 39 H 1.08007 * 125.20315 * 179.97438 * 19 18 17 40 40 H 1.08008 * 125.20220 * 0.05194 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 7 4.0545 -1.5231 2.3877 7 6 5.4789 -1.8579 2.2579 8 6 5.6582 -2.8720 1.1576 9 1 4.7939 -3.2998 0.6713 10 6 6.9257 -3.2539 0.7719 11 7 7.9781 -2.7327 1.3637 12 14 7.1479 -4.5115 -0.5914 13 1 5.8168 -4.9417 -1.0898 14 1 7.9210 -3.9038 -1.7042 15 1 7.8826 -5.6891 -0.0635 16 6 3.8100 -0.7217 3.5943 17 6 3.9632 -1.5920 4.8151 18 6 5.1381 -1.6511 5.5446 19 6 5.1057 -2.4705 6.5967 20 16 3.5221 -3.2282 6.7058 21 6 2.9768 -2.3635 5.2746 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6053 -1.7199 1.2952 30 1 1.7517 -0.1583 2.1370 31 1 3.9995 0.1674 1.1421 32 1 3.8532 -1.3941 0.3003 33 1 6.0434 -0.9571 2.0171 34 1 5.8416 -2.2737 3.1979 35 1 8.8698 -3.0016 1.0925 36 1 2.7990 -0.3157 3.5622 37 1 4.5289 0.0965 3.6390 38 1 6.0159 -1.0805 5.2796 39 1 5.9266 -2.6429 7.2771 40 1 1.9939 -2.4453 4.8345 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:10 Heat of formation + Delta-G solvation = 1.182880 kcal Electronic energy + Delta-G solvation = -18449.921451 eV Core-core repulsion = 15776.021936 eV Total energy + Delta-G solvation = -2673.899515 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.89132 -38.14357 -36.40373 -34.58611 -31.17041 -30.37879 -28.78205 -27.95703 -26.58572 -24.52709 -23.78452 -21.63495 -20.71903 -19.60739 -18.66485 -18.23416 -16.90308 -16.41807 -16.15536 -15.96731 -15.40693 -14.90061 -14.50587 -14.28315 -14.00360 -13.78263 -13.67645 -13.49455 -13.43825 -13.01250 -12.91803 -12.79276 -12.58440 -12.45633 -12.35717 -12.02625 -11.94137 -11.66000 -11.48916 -11.35795 -11.25768 -11.11911 -10.59413 -9.60811 -9.20218 -8.92421 -8.19117 -6.27777 0.19010 0.87241 1.12012 1.38130 1.39049 1.52248 1.83393 2.40085 3.13549 3.42052 4.01371 4.05718 4.11441 4.21937 4.23035 4.36640 4.47128 4.58945 4.62163 4.74156 4.80099 4.86570 4.88190 4.91148 5.04676 5.06321 5.16701 5.20042 5.23100 5.30217 5.39468 5.43208 5.52026 5.56826 5.59109 5.66006 5.70542 6.10652 6.40247 6.68426 6.89783 7.41238 8.91806 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.009084 B = 0.008329 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.573338 B = 3360.888351 C = 5791.739702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.098 4.098 5 C 0.066 3.934 6 N -0.535 5.535 7 C 0.211 3.789 8 C -0.518 4.518 9 H 0.059 0.941 10 C 0.002 3.998 11 N -0.934 5.934 12 Si 0.962 3.038 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.279 1.279 16 C 0.111 3.889 17 C -0.103 4.103 18 C -0.142 4.142 19 C -0.219 4.219 20 S 0.108 5.892 21 C -0.196 4.196 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.017 0.983 32 H 0.055 0.945 33 H -0.043 1.043 34 H 0.012 0.988 35 H 0.263 0.737 36 H 0.099 0.901 37 H 0.020 0.980 38 H 0.122 0.878 39 H 0.180 0.820 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 4.648 5.225 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.135 4.135 5 C -0.062 4.062 6 N -0.259 5.259 7 C 0.084 3.916 8 C -0.556 4.556 9 H 0.077 0.923 10 C -0.195 4.195 11 N -0.575 5.575 12 Si 0.787 3.213 13 H -0.188 1.188 14 H -0.204 1.204 15 H -0.205 1.205 16 C -0.019 4.019 17 C -0.116 4.116 18 C -0.173 4.173 19 C -0.354 4.354 20 S 0.370 5.630 21 C -0.332 4.332 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.035 0.965 32 H 0.074 0.926 33 H -0.026 1.026 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.039 0.961 38 H 0.140 0.860 39 H 0.197 0.803 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.054 3.159 6.273 15.711 hybrid contribution 2.164 1.148 -1.721 2.994 sum -11.889 4.307 4.552 13.440 Atomic orbital electron populations 1.21766 0.93643 1.01904 1.02247 1.21096 0.96784 0.96245 0.97501 1.21862 1.00361 0.95865 1.02204 1.21602 0.93131 1.00584 0.98225 1.22033 0.95852 0.95170 0.93112 1.62084 1.19139 1.42936 1.01729 1.19360 0.83192 0.93146 0.95884 1.21488 0.92086 1.23416 1.18624 0.92294 1.25851 0.95623 0.98712 0.99352 1.70093 0.98494 1.45120 1.43747 0.85435 0.78389 0.78660 0.78785 1.18795 1.20373 1.20492 1.20786 1.01302 0.92228 0.87583 1.18894 0.93499 1.01321 0.97852 1.20207 0.98752 1.02101 0.96262 1.25759 1.02072 1.03421 1.04102 1.83726 1.06270 1.46118 1.26850 1.25552 1.04288 1.02342 1.01024 0.92109 0.91879 0.92733 0.92264 0.91767 0.92135 0.94149 0.92042 0.91324 0.96485 0.92626 1.02581 0.96977 0.92856 0.88288 0.96145 0.86048 0.80252 0.80544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 2 C -0.10 -2.38 2.92 -10.79 -0.03 -2.41 16 3 C -0.15 -3.35 8.95 71.98 0.64 -2.71 16 4 C -0.10 -2.84 4.65 30.60 0.14 -2.70 16 5 C 0.07 2.56 4.57 86.30 0.39 2.95 16 6 N -0.53 -23.22 4.45 -905.38 -4.03 -27.24 16 7 C 0.21 11.40 4.57 85.56 0.39 11.80 16 8 C -0.52 -29.94 8.25 25.60 0.21 -29.73 16 9 H 0.06 3.38 7.39 -2.91 -0.02 3.36 16 10 C 0.00 0.14 5.46 84.66 0.46 0.60 16 11 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 12 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 13 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 C 0.11 4.05 5.10 85.56 0.44 4.48 16 17 C -0.10 -3.67 4.76 -20.92 -0.10 -3.77 16 18 C -0.14 -5.11 8.74 21.22 0.19 -4.92 16 19 C -0.22 -6.63 11.23 66.72 0.75 -5.88 16 20 S 0.11 2.92 23.34 -56.49 -1.32 1.60 16 21 C -0.20 -6.01 10.99 66.72 0.73 -5.28 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.07 6.56 -2.39 -0.02 1.06 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 1.80 6.29 -2.39 -0.02 1.79 16 31 H 0.02 0.66 6.54 -2.39 -0.02 0.65 16 32 H 0.06 2.45 6.75 -2.39 -0.02 2.44 16 33 H -0.04 -2.61 8.12 -2.38 -0.02 -2.63 16 34 H 0.01 0.71 6.28 -2.39 -0.01 0.69 16 35 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 36 H 0.10 3.01 5.95 -2.39 -0.01 2.99 16 37 H 0.02 0.78 8.02 -2.38 -0.02 0.76 16 38 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 39 H 0.18 4.48 8.06 -2.91 -0.02 4.45 16 40 H 0.18 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -64.85 332.69 2.84 -62.01 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.99 Total: 12.78 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 4.88 Total: -39.56 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.74 Total: -84.06 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.32 Total: 1.60 kcal Total: -64.85 2.84 -62.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.190 kcal (2) G-P(sol) polarization free energy of solvation -64.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds