Wall clock time and date at job start Mon Mar 30 2020 00:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 110.99650 * 2 1 4 4 C 1.50694 * 109.47121 * 293.94882 * 3 2 1 5 5 C 1.38424 * 122.53993 * 90.00286 * 4 3 2 6 6 C 1.33387 * 114.92259 * 179.97438 * 5 4 3 7 7 S 1.75882 * 109.59731 * 359.97438 * 6 5 4 8 8 C 1.33393 * 122.54424 * 269.97873 * 4 3 2 9 9 C 1.46897 * 110.99970 * 123.95005 * 2 1 3 10 10 C 1.52997 * 109.47116 * 85.42973 * 9 2 1 11 11 C 1.52998 * 109.47500 * 300.33691 * 10 9 2 12 12 C 1.53004 * 109.46839 * 60.34049 * 10 9 2 13 13 C 1.53002 * 109.47427 * 180.33521 * 10 9 2 14 14 C 1.50701 * 109.47371 * 180.02562 * 13 10 9 15 15 H 1.07997 * 119.99677 * 0.02562 * 14 13 10 16 16 C 1.37873 * 120.00110 * 179.97438 * 14 13 10 17 17 N 1.31511 * 120.00431 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99906 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47417 * 89.99884 * 18 16 14 20 20 H 1.48506 * 109.47152 * 209.99873 * 18 16 14 21 21 H 1.48499 * 109.47149 * 329.99627 * 18 16 14 22 22 H 1.09004 * 109.46847 * 67.62159 * 1 2 3 23 23 H 1.09004 * 109.47073 * 187.61238 * 1 2 3 24 24 H 1.08995 * 109.47805 * 307.61687 * 1 2 3 25 25 H 1.09004 * 109.47277 * 173.94910 * 3 2 1 26 26 H 1.08994 * 109.47427 * 53.95252 * 3 2 1 27 27 H 1.07996 * 122.53834 * 359.70853 * 5 4 3 28 28 H 1.08003 * 125.20347 * 179.97438 * 6 5 4 29 29 H 1.08005 * 125.19523 * 0.05592 * 8 4 3 30 30 H 1.08999 * 109.47055 * 205.43321 * 9 2 1 31 31 H 1.09000 * 109.46976 * 325.43116 * 9 2 1 32 32 H 1.09006 * 109.46534 * 68.65438 * 11 10 9 33 33 H 1.08995 * 109.47245 * 188.64904 * 11 10 9 34 34 H 1.09001 * 109.46915 * 308.65613 * 11 10 9 35 35 H 1.08998 * 109.47542 * 59.99818 * 12 10 9 36 36 H 1.09007 * 109.47192 * 180.02562 * 12 10 9 37 37 H 1.09005 * 109.46841 * 299.99335 * 12 10 9 38 38 H 1.09004 * 109.46815 * 300.00642 * 13 10 9 39 39 H 1.08999 * 109.46720 * 59.99966 * 13 10 9 40 40 H 0.96999 * 120.00493 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.4642 2.7630 -1.4663 6 6 0.3008 3.2983 -2.6771 7 16 1.6825 2.8996 -3.6897 8 6 2.4258 2.0009 -2.3731 9 6 1.9954 -0.7659 1.1376 10 6 2.0709 -2.2475 0.7637 11 6 0.6732 -2.7542 0.4020 12 6 3.0037 -2.4238 -0.4362 13 6 2.6113 -3.0465 1.9514 14 6 2.6862 -4.5058 1.5829 15 1 2.3795 -4.8308 0.5998 16 6 3.1473 -5.4257 2.5005 17 7 3.2132 -6.6992 2.1788 18 14 3.6786 -4.8633 4.2008 19 1 2.5136 -4.9004 5.1209 20 1 4.7414 -5.7662 4.7112 21 1 4.2031 -3.4763 4.1219 22 1 -0.3633 0.3913 -0.9503 23 1 -0.3633 -1.0186 0.1361 24 1 -0.3634 0.6272 0.8139 25 1 3.0796 1.3445 0.1083 26 1 1.5610 1.9274 0.8308 27 1 -0.2654 2.8759 -0.6780 28 1 -0.5499 3.8866 -2.9881 29 1 3.3758 1.4897 -2.4264 30 1 2.9920 -0.4035 1.3896 31 1 1.3356 -0.6410 1.9962 32 1 0.3513 -2.2955 -0.5330 33 1 0.6984 -3.8376 0.2854 34 1 -0.0256 -2.4902 1.1957 35 1 3.9994 -2.0629 -0.1785 36 1 3.0572 -3.4794 -0.7029 37 1 2.6186 -1.8547 -1.2824 38 1 3.6070 -2.6855 2.2091 39 1 1.9468 -2.9208 2.8062 40 1 3.5373 -7.3465 2.8245 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120495482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:42 Heat of formation + Delta-G solvation = 36.035193 kcal Electronic energy + Delta-G solvation = -18547.034284 eV Core-core repulsion = 15874.646079 eV Total energy + Delta-G solvation = -2672.388205 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.12991 -37.52689 -34.68874 -32.15204 -30.19457 -27.88973 -27.68474 -26.62274 -25.88405 -23.81006 -22.43786 -21.08542 -18.85056 -17.90906 -17.55421 -16.72707 -15.53177 -15.36703 -14.99513 -14.22943 -13.84817 -13.38379 -13.28058 -12.99568 -12.74825 -12.63948 -12.62722 -12.19474 -12.16289 -11.96131 -11.43921 -11.32695 -10.92201 -10.87869 -10.79581 -10.48514 -10.44132 -10.28134 -9.75947 -9.60336 -9.19113 -8.90730 -8.84376 -8.50435 -8.47272 -7.96419 -5.97505 -3.93322 0.95358 1.59407 1.91061 2.60379 3.33361 3.41178 3.44568 4.32322 4.50284 4.82932 4.97298 5.17838 5.33332 5.35453 5.46350 5.50079 5.58490 5.61813 5.75419 5.87358 5.96113 5.97993 6.16960 6.20367 6.26458 6.33736 6.43084 6.52067 6.67718 6.74808 6.85203 7.12871 7.21797 7.23291 7.28404 7.39557 7.43901 7.54474 7.88769 8.63137 9.08967 9.65755 11.15665 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.040465 B = 0.003876 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.796098 B = 7221.889963 C = 7326.626383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.526 5.526 3 C 0.111 3.889 4 C -0.093 4.093 5 C -0.124 4.124 6 C -0.218 4.218 7 S 0.079 5.921 8 C -0.186 4.186 9 C 0.062 3.938 10 C -0.041 4.041 11 C -0.134 4.134 12 C -0.117 4.117 13 C -0.005 4.005 14 C -0.505 4.505 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.875 3.125 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.267 1.267 22 H 0.061 0.939 23 H 0.092 0.908 24 H 0.016 0.984 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.135 0.865 28 H 0.160 0.840 29 H 0.165 0.835 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.013 0.987 39 H 0.007 0.993 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 20.407 -7.806 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.250 5.250 3 C -0.019 4.019 4 C -0.105 4.105 5 C -0.155 4.155 6 C -0.353 4.353 7 S 0.342 5.658 8 C -0.322 4.322 9 C -0.065 4.065 10 C -0.042 4.042 11 C -0.191 4.191 12 C -0.174 4.174 13 C -0.043 4.043 14 C -0.543 4.543 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.546 5.546 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.192 1.192 22 H 0.080 0.920 23 H 0.111 0.889 24 H 0.035 0.965 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.153 0.847 28 H 0.178 0.822 29 H 0.182 0.818 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.025 0.975 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.138 20.338 -9.671 22.898 hybrid contribution -0.411 0.276 3.211 3.249 sum -4.549 20.615 -6.461 22.077 Atomic orbital electron populations 1.22938 0.87884 1.03541 0.99962 1.61957 1.07705 1.11098 1.44220 1.20818 1.00269 0.88846 0.91942 1.18836 0.94669 1.00066 0.96960 1.20109 0.98239 0.99596 0.97583 1.25503 1.03265 1.08823 0.97713 1.84230 1.14428 1.50491 1.16686 1.25477 1.05153 1.06040 0.95576 1.22386 0.98690 0.95373 0.90100 1.20337 0.95760 0.90894 0.97192 1.22003 0.95698 1.02461 0.98932 1.21603 0.97450 1.01536 0.96826 1.19641 0.95301 0.96310 0.93063 1.21144 1.42311 0.89557 1.01306 0.90382 1.25014 0.95484 0.94830 0.98269 1.69907 1.47959 1.01318 1.35418 0.86856 0.78579 0.78933 0.85333 1.20536 1.21591 1.19160 0.92008 0.88937 0.96534 0.90095 0.94393 0.84705 0.82196 0.81758 0.91817 0.94842 0.93321 0.91305 0.94473 0.94580 0.92225 0.93504 0.96846 0.97471 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 8.27 60.06 0.50 0.56 16 2 N -0.53 -7.46 3.77 -244.38 -0.92 -8.38 16 3 C 0.11 1.36 5.16 -4.98 -0.03 1.33 16 4 C -0.09 -1.07 4.75 -106.25 -0.50 -1.58 16 5 C -0.12 -1.29 8.60 -41.21 -0.35 -1.65 16 6 C -0.22 -2.06 11.23 29.04 0.33 -1.74 16 7 S 0.08 0.77 23.34 -107.50 -2.51 -1.74 16 8 C -0.19 -2.08 10.98 29.04 0.32 -1.76 16 9 C 0.06 1.00 4.23 -3.83 -0.02 0.99 16 10 C -0.04 -0.80 0.60 -154.51 -0.09 -0.89 16 11 C -0.13 -2.51 6.67 37.16 0.25 -2.26 16 12 C -0.12 -2.25 8.06 37.16 0.30 -1.96 16 13 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 14 C -0.51 -13.96 8.09 -34.44 -0.28 -14.24 16 15 H 0.08 2.31 5.97 -52.49 -0.31 2.00 16 16 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.91 -27.85 13.96 55.43 0.77 -27.08 16 18 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 22 H 0.06 0.78 6.73 -51.93 -0.35 0.43 16 23 H 0.09 1.30 3.89 -51.93 -0.20 1.10 16 24 H 0.02 0.20 8.03 -51.93 -0.42 -0.22 16 25 H 0.08 0.96 7.76 -51.93 -0.40 0.56 16 26 H 0.04 0.44 8.03 -51.93 -0.42 0.02 16 27 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.06 1.01 7.57 -51.93 -0.39 0.62 16 31 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 32 H 0.05 0.82 6.21 -51.93 -0.32 0.50 16 33 H 0.07 1.47 6.38 -51.93 -0.33 1.14 16 34 H 0.04 0.65 7.47 -51.93 -0.39 0.27 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 1.29 6.62 -51.92 -0.34 0.94 16 37 H 0.05 0.83 7.61 -51.93 -0.40 0.44 16 38 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 39 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 320.02 15.07 4.82 4.82 Total: -1.00 -29.64 320.02 -8.58 -38.22 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.31 Total: -1.32 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 0.23 Total: -21.64 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.15 Total: -35.46 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.64 -8.58 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120495482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.259 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds