Wall clock time and date at job start Mon Mar 30 2020 00:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 110.99650 * 2 1 4 4 C 1.50694 * 109.47121 * 293.94882 * 3 2 1 5 5 C 1.38424 * 122.53993 * 90.00286 * 4 3 2 6 6 C 1.33387 * 114.92259 * 179.97438 * 5 4 3 7 7 S 1.75882 * 109.59731 * 359.97438 * 6 5 4 8 8 C 1.33393 * 122.54424 * 269.97873 * 4 3 2 9 9 C 1.46897 * 110.99970 * 123.95005 * 2 1 3 10 10 C 1.52997 * 109.47116 * 85.42973 * 9 2 1 11 11 C 1.52998 * 109.47500 * 300.33691 * 10 9 2 12 12 C 1.53004 * 109.46839 * 60.34049 * 10 9 2 13 13 C 1.53002 * 109.47427 * 180.33521 * 10 9 2 14 14 C 1.50701 * 109.47371 * 180.02562 * 13 10 9 15 15 H 1.07997 * 119.99677 * 0.02562 * 14 13 10 16 16 C 1.37873 * 120.00110 * 179.97438 * 14 13 10 17 17 N 1.31511 * 120.00431 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99906 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47417 * 89.99884 * 18 16 14 20 20 H 1.48506 * 109.47152 * 209.99873 * 18 16 14 21 21 H 1.48499 * 109.47149 * 329.99627 * 18 16 14 22 22 H 1.09004 * 109.46847 * 67.62159 * 1 2 3 23 23 H 1.09004 * 109.47073 * 187.61238 * 1 2 3 24 24 H 1.08995 * 109.47805 * 307.61687 * 1 2 3 25 25 H 1.09004 * 109.47277 * 173.94910 * 3 2 1 26 26 H 1.08994 * 109.47427 * 53.95252 * 3 2 1 27 27 H 1.07996 * 122.53834 * 359.70853 * 5 4 3 28 28 H 1.08003 * 125.20347 * 179.97438 * 6 5 4 29 29 H 1.08005 * 125.19523 * 0.05592 * 8 4 3 30 30 H 1.08999 * 109.47055 * 205.43321 * 9 2 1 31 31 H 1.09000 * 109.46976 * 325.43116 * 9 2 1 32 32 H 1.09006 * 109.46534 * 68.65438 * 11 10 9 33 33 H 1.08995 * 109.47245 * 188.64904 * 11 10 9 34 34 H 1.09001 * 109.46915 * 308.65613 * 11 10 9 35 35 H 1.08998 * 109.47542 * 59.99818 * 12 10 9 36 36 H 1.09007 * 109.47192 * 180.02562 * 12 10 9 37 37 H 1.09005 * 109.46841 * 299.99335 * 12 10 9 38 38 H 1.09004 * 109.46815 * 300.00642 * 13 10 9 39 39 H 1.08999 * 109.46720 * 59.99966 * 13 10 9 40 40 H 0.96999 * 120.00493 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 0.4642 2.7630 -1.4663 6 6 0.3008 3.2983 -2.6771 7 16 1.6825 2.8996 -3.6897 8 6 2.4258 2.0009 -2.3731 9 6 1.9954 -0.7659 1.1376 10 6 2.0709 -2.2475 0.7637 11 6 0.6732 -2.7542 0.4020 12 6 3.0037 -2.4238 -0.4362 13 6 2.6113 -3.0465 1.9514 14 6 2.6862 -4.5058 1.5829 15 1 2.3795 -4.8308 0.5998 16 6 3.1473 -5.4257 2.5005 17 7 3.2132 -6.6992 2.1788 18 14 3.6786 -4.8633 4.2008 19 1 2.5136 -4.9004 5.1209 20 1 4.7414 -5.7662 4.7112 21 1 4.2031 -3.4763 4.1219 22 1 -0.3633 0.3913 -0.9503 23 1 -0.3633 -1.0186 0.1361 24 1 -0.3634 0.6272 0.8139 25 1 3.0796 1.3445 0.1083 26 1 1.5610 1.9274 0.8308 27 1 -0.2654 2.8759 -0.6780 28 1 -0.5499 3.8866 -2.9881 29 1 3.3758 1.4897 -2.4264 30 1 2.9920 -0.4035 1.3896 31 1 1.3356 -0.6410 1.9962 32 1 0.3513 -2.2955 -0.5330 33 1 0.6984 -3.8376 0.2854 34 1 -0.0256 -2.4902 1.1957 35 1 3.9994 -2.0629 -0.1785 36 1 3.0572 -3.4794 -0.7029 37 1 2.6186 -1.8547 -1.2824 38 1 3.6070 -2.6855 2.2091 39 1 1.9468 -2.9208 2.8062 40 1 3.5373 -7.3465 2.8245 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120495482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:41 Heat of formation + Delta-G solvation = 19.389071 kcal Electronic energy + Delta-G solvation = -18547.756114 eV Core-core repulsion = 15874.646079 eV Total energy + Delta-G solvation = -2673.110035 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.19258 -38.69549 -36.06608 -34.20898 -31.09201 -29.65387 -28.99858 -27.82364 -27.25144 -25.12477 -23.88330 -22.25349 -19.73937 -19.34841 -18.83968 -18.39746 -16.61781 -16.49416 -16.12347 -16.08062 -15.15472 -14.84765 -14.73684 -14.12997 -14.09484 -13.81956 -13.77157 -13.60640 -13.32591 -13.04243 -12.88883 -12.73683 -12.33596 -12.27437 -12.20213 -12.12434 -11.82637 -11.71942 -11.60844 -11.24531 -10.88296 -10.74980 -10.67784 -9.63854 -9.32144 -9.02681 -8.19670 -6.19803 0.18157 0.84194 1.14980 1.37018 1.38939 1.50023 1.79444 2.41262 3.15410 3.24557 4.04739 4.07964 4.16322 4.24094 4.37438 4.41708 4.52830 4.62680 4.65177 4.76120 4.79886 4.84386 4.90485 4.98585 5.05390 5.11734 5.14141 5.20654 5.24984 5.42488 5.48906 5.55350 5.57289 5.61854 5.67000 5.79426 5.86651 6.21556 6.27634 6.45890 6.87727 7.42491 8.96739 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.040465 B = 0.003876 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.796098 B = 7221.889963 C = 7326.626383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.535 5.535 3 C 0.114 3.886 4 C -0.101 4.101 5 C -0.137 4.137 6 C -0.214 4.214 7 S 0.088 5.912 8 C -0.204 4.204 9 C 0.073 3.927 10 C -0.042 4.042 11 C -0.124 4.124 12 C -0.107 4.107 13 C -0.003 4.003 14 C -0.502 4.502 15 H 0.042 0.958 16 C 0.000 4.000 17 N -0.956 5.956 18 Si 0.941 3.059 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.248 1.248 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.029 0.971 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.147 0.853 28 H 0.184 0.816 29 H 0.166 0.834 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.047 0.953 35 H 0.038 0.962 36 H 0.024 0.976 37 H 0.062 0.938 38 H 0.014 0.986 39 H 0.011 0.989 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 23.283 -7.227 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.258 5.258 3 C -0.016 4.016 4 C -0.114 4.114 5 C -0.167 4.167 6 C -0.349 4.349 7 S 0.351 5.649 8 C -0.340 4.340 9 C -0.055 4.055 10 C -0.043 4.043 11 C -0.181 4.181 12 C -0.164 4.164 13 C -0.041 4.041 14 C -0.540 4.540 15 H 0.060 0.940 16 C -0.195 4.195 17 N -0.598 5.598 18 Si 0.766 3.234 19 H -0.196 1.196 20 H -0.216 1.216 21 H -0.171 1.171 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.047 0.953 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.164 0.836 28 H 0.201 0.799 29 H 0.183 0.817 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.032 0.968 39 H 0.030 0.970 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.677 23.245 -9.106 25.399 hybrid contribution -0.284 -0.606 2.888 2.965 sum -4.962 22.639 -6.218 23.996 Atomic orbital electron populations 1.22884 0.87186 1.03102 1.00833 1.61852 1.08397 1.12422 1.43161 1.20813 1.00334 0.87661 0.92782 1.18881 0.95310 1.00519 0.96664 1.20236 0.98237 0.99905 0.98338 1.25838 1.03555 1.08268 0.97258 1.84218 1.14510 1.49963 1.16210 1.25637 1.05539 1.06595 0.96244 1.22116 0.99463 0.93034 0.90875 1.20287 0.95567 0.92994 0.95418 1.21911 0.95873 0.99956 1.00363 1.21486 0.97880 0.99439 0.97582 1.19598 0.95610 0.93995 0.94880 1.21436 1.40779 0.92056 0.99756 0.93951 1.25931 0.95986 0.94804 1.02825 1.70069 1.49899 1.02801 1.37069 0.85789 0.78361 0.79259 0.79995 1.19602 1.21568 1.17119 0.91368 0.90065 0.95257 0.90000 0.93398 0.83555 0.79916 0.81675 0.91214 0.94363 0.91420 0.95087 0.93388 0.94290 0.95655 0.91857 0.96777 0.97037 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.27 127.69 1.06 1.23 16 2 N -0.53 -13.77 3.77 -927.09 -3.49 -17.26 16 3 C 0.11 2.46 5.16 85.56 0.44 2.90 16 4 C -0.10 -2.09 4.75 -20.92 -0.10 -2.19 16 5 C -0.14 -2.46 8.60 21.22 0.18 -2.27 16 6 C -0.21 -3.45 11.23 66.72 0.75 -2.70 16 7 S 0.09 1.54 23.34 -56.49 -1.32 0.22 16 8 C -0.20 -4.18 10.98 66.72 0.73 -3.45 16 9 C 0.07 2.19 4.23 86.30 0.37 2.55 16 10 C -0.04 -1.59 0.60 -52.18 -0.03 -1.62 16 11 C -0.12 -4.60 6.67 71.98 0.48 -4.12 16 12 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 13 C 0.00 -0.14 3.11 29.85 0.09 -0.04 16 14 C -0.50 -28.40 8.09 25.60 0.21 -28.20 16 15 H 0.04 2.64 5.97 -2.91 -0.02 2.63 16 16 C 0.00 0.00 5.47 84.65 0.46 0.46 16 17 N -0.96 -60.58 13.96 21.45 0.30 -60.28 16 18 Si 0.94 44.73 27.47 68.60 1.88 46.61 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 22 H 0.07 1.53 6.73 -2.39 -0.02 1.51 16 23 H 0.08 2.09 3.89 -2.39 -0.01 2.08 16 24 H 0.03 0.62 8.03 -2.39 -0.02 0.60 16 25 H 0.08 1.74 7.76 -2.39 -0.02 1.73 16 26 H 0.05 0.95 8.03 -2.39 -0.02 0.93 16 27 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 28 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.07 2.01 7.57 -2.39 -0.02 2.00 16 31 H 0.04 1.12 7.85 -2.39 -0.02 1.10 16 32 H 0.07 2.22 6.21 -2.38 -0.01 2.21 16 33 H 0.03 1.35 6.38 -2.39 -0.02 1.34 16 34 H 0.05 1.64 7.47 -2.39 -0.02 1.62 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.02 1.11 6.62 -2.38 -0.02 1.09 16 37 H 0.06 2.19 7.61 -2.38 -0.02 2.17 16 38 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 39 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 40 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -64.34 320.02 3.54 -60.79 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.95 Total: 10.84 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 5.22 Total: -40.93 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -3.19 Total: -77.54 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.32 Total: 0.22 kcal Total: -64.34 3.54 -60.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120495482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.182 kcal (2) G-P(sol) polarization free energy of solvation -64.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds