Wall clock time and date at job start Mon Mar 30 2020 00:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 C 1.52995 * 109.47091 * 119.99996 * 2 1 3 5 5 C 1.53003 * 109.46982 * 65.00260 * 4 2 1 6 6 N 1.46904 * 109.47081 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99494 * 293.95014 * 6 5 4 8 8 C 1.50695 * 109.46974 * 299.92749 * 7 6 5 9 9 H 1.07994 * 120.00290 * 4.85069 * 8 7 6 10 10 C 1.37885 * 119.99456 * 184.83984 * 8 7 6 11 11 N 1.31503 * 120.00227 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99493 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47410 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47003 * 120.00453 * 12 10 8 15 15 H 1.48503 * 109.47267 * 240.00293 * 12 10 8 16 16 C 1.46899 * 111.00007 * 169.99735 * 6 5 4 17 17 C 1.50700 * 109.47012 * 199.39478 * 16 6 5 18 18 C 1.33386 * 125.19918 * 84.32499 * 17 16 6 19 19 C 1.38431 * 114.91633 * 179.97438 * 18 17 16 20 20 C 1.33387 * 114.92272 * 359.97438 * 19 18 17 21 21 S 1.75881 * 125.20086 * 264.01783 * 17 16 6 22 22 H 1.09005 * 109.47151 * 299.99796 * 1 2 3 23 23 H 1.08998 * 109.47557 * 59.99395 * 1 2 3 24 24 H 1.08995 * 109.47438 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46767 * 240.00681 * 2 1 3 26 26 H 1.08992 * 109.47391 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47373 * 300.00718 * 3 2 1 28 28 H 1.09005 * 109.46915 * 60.00059 * 3 2 1 29 29 H 1.09000 * 109.47424 * 305.00073 * 4 2 1 30 30 H 1.09003 * 109.47023 * 184.99949 * 4 2 1 31 31 H 1.09000 * 109.47194 * 59.99672 * 5 4 2 32 32 H 1.09003 * 109.46987 * 299.99710 * 5 4 2 33 33 H 1.09001 * 109.47070 * 59.93346 * 7 6 5 34 34 H 1.09006 * 109.46623 * 179.97438 * 7 6 5 35 35 H 0.96999 * 120.00167 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.47063 * 319.39989 * 16 6 5 37 37 H 1.09004 * 109.47156 * 79.39438 * 16 6 5 38 38 H 1.07994 * 122.54225 * 359.95398 * 18 17 16 39 39 H 1.07998 * 122.53731 * 180.02562 * 19 18 17 40 40 H 1.07996 * 125.20399 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1244 -2.8879 2.3876 7 6 3.5927 -2.9292 2.4096 8 6 4.0928 -3.6631 1.1922 9 1 3.3960 -3.9906 0.4349 10 6 5.4402 -3.9163 1.0451 11 7 6.2887 -3.5177 1.9674 12 14 6.0603 -4.8254 -0.4644 13 1 4.9132 -5.1624 -1.3453 14 1 7.0154 -3.9622 -1.2045 15 1 6.7452 -6.0740 -0.0436 16 6 1.5581 -4.2400 2.4827 17 6 1.6763 -4.7355 3.9010 18 6 0.8115 -4.4724 4.8819 19 6 1.1278 -5.0376 6.1054 20 6 2.2490 -5.7600 6.1178 21 16 2.9715 -5.7553 4.5141 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5137 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6054 -0.2618 2.1370 30 1 3.1263 -0.6443 1.2951 31 1 2.0698 -2.6549 0.3001 32 1 0.5489 -2.2724 1.1420 33 1 3.9848 -1.9122 2.4075 34 1 3.9281 -3.4468 3.3084 35 1 7.2365 -3.6962 1.8641 36 1 0.5077 -4.2153 2.1928 37 1 2.1030 -4.9097 1.8173 38 1 -0.0684 -3.8642 4.7330 39 1 0.5128 -4.9044 6.9831 40 1 2.6497 -6.2728 6.9797 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123495780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:09 Heat of formation + Delta-G solvation = 16.529482 kcal Electronic energy + Delta-G solvation = -18536.672698 eV Core-core repulsion = 15863.438662 eV Total energy + Delta-G solvation = -2673.234037 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -37.94152 -36.91063 -35.25262 -32.45535 -30.41050 -28.22154 -26.91920 -26.66752 -24.63351 -23.31845 -22.22047 -20.03224 -19.34939 -18.51777 -16.78627 -16.01993 -15.24429 -15.01278 -14.70840 -14.49754 -13.85484 -13.52975 -13.24318 -12.81532 -12.44199 -12.23482 -12.12274 -12.00365 -11.90959 -11.68018 -11.40171 -11.06802 -10.89657 -10.78399 -10.67377 -10.34639 -10.26752 -10.14480 -9.98077 -9.92060 -9.78782 -9.51137 -8.42431 -8.10891 -7.82880 -7.16323 -6.01430 -4.10063 1.57759 2.26730 2.66975 3.25428 3.27423 3.34217 3.36433 4.40364 4.97126 5.26003 5.28176 5.31844 5.41169 5.48023 5.54233 5.82822 5.89114 5.93158 5.98202 6.03133 6.04687 6.10127 6.15806 6.23348 6.31650 6.38617 6.45607 6.59884 6.60546 6.68881 6.84680 6.94720 6.98277 7.07315 7.30469 7.57245 7.92846 8.06034 8.26842 8.32563 8.99795 9.55957 11.03300 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.007986 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.501074 B = 3505.265246 C = 5410.016716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.105 4.105 5 C 0.063 3.937 6 N -0.537 5.537 7 C 0.180 3.820 8 C -0.548 4.548 9 H 0.056 0.944 10 C 0.069 3.931 11 N -0.885 5.885 12 Si 0.882 3.118 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.122 3.878 17 C -0.134 4.134 18 C -0.150 4.150 19 C -0.136 4.136 20 C -0.244 4.244 21 S 0.131 5.869 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.261 0.739 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 1.237 1.975 10.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.142 4.142 5 C -0.065 4.065 6 N -0.261 5.261 7 C 0.055 3.945 8 C -0.587 4.587 9 H 0.074 0.926 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.710 3.290 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.008 4.008 17 C -0.253 4.253 18 C -0.180 4.180 19 C -0.167 4.167 20 C -0.380 4.380 21 S 0.395 5.605 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.952 0.849 1.811 9.173 hybrid contribution -0.355 -0.315 -0.814 0.942 sum -9.307 0.535 0.997 9.376 Atomic orbital electron populations 1.21869 0.95953 1.01540 1.00835 1.21094 0.95223 0.95905 0.99336 1.21809 1.01178 0.96269 1.00870 1.21548 1.01909 0.94650 0.96142 1.21981 0.97447 0.94100 0.93009 1.62535 1.11916 1.14258 1.37371 1.19888 0.80502 0.97329 0.96826 1.21708 0.92616 1.37585 1.06756 0.92614 1.24902 0.96978 0.95557 0.95977 1.69947 1.02699 1.46195 1.33524 0.86705 0.78989 0.79810 0.83541 1.19896 1.20976 1.20934 1.20429 0.98855 0.92106 0.89373 1.24537 0.97523 1.02641 1.00572 1.19950 1.02105 1.03888 0.92094 1.20027 0.97808 1.00421 0.98478 1.25625 1.01520 1.08972 1.01932 1.84815 1.26303 1.47994 1.01406 0.93003 0.93595 0.92592 0.91463 0.92645 0.93428 0.93026 0.92384 0.90991 0.93902 0.93150 0.95105 0.94223 0.92918 0.91363 0.92281 0.85046 0.85416 0.82892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.95 37.16 0.33 -1.48 16 2 C -0.10 -1.40 2.92 -90.62 -0.26 -1.66 16 3 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 4 C -0.10 -1.83 4.61 -26.73 -0.12 -1.95 16 5 C 0.06 1.18 4.49 -3.82 -0.02 1.16 16 6 N -0.54 -11.27 4.63 -237.50 -1.10 -12.37 16 7 C 0.18 4.51 4.77 -4.97 -0.02 4.49 16 8 C -0.55 -14.53 7.28 -34.44 -0.25 -14.78 16 9 H 0.06 1.48 6.00 -52.49 -0.31 1.16 16 10 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 11 N -0.89 -25.55 13.28 55.43 0.74 -24.82 16 12 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 C 0.12 2.38 5.35 -4.98 -0.03 2.35 16 17 C -0.13 -2.52 5.44 -36.00 -0.20 -2.71 16 18 C -0.15 -2.49 10.05 -41.21 -0.41 -2.91 16 19 C -0.14 -2.06 10.18 -41.21 -0.42 -2.48 16 20 C -0.24 -3.83 11.23 29.04 0.33 -3.50 16 21 S 0.13 2.45 22.47 -107.50 -2.42 0.03 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.46 6.55 -51.93 -0.34 1.12 16 31 H 0.04 0.89 6.21 -51.93 -0.32 0.57 16 32 H 0.05 0.84 6.25 -51.93 -0.32 0.51 16 33 H 0.03 0.84 6.47 -51.93 -0.34 0.50 16 34 H 0.04 1.08 6.74 -51.93 -0.35 0.73 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.07 1.16 7.74 -51.93 -0.40 0.76 16 37 H 0.06 1.27 6.52 -51.93 -0.34 0.93 16 38 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 39 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -28.18 329.67 -10.10 -38.28 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.43 Total: 0.98 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -0.83 Total: -23.22 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.36 Total: -37.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.42 Total: 0.03 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.18 -10.10 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123495780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.806 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds