Wall clock time and date at job start Mon Mar 30 2020 00:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 C 1.52995 * 109.47091 * 119.99996 * 2 1 3 5 5 C 1.53003 * 109.46982 * 65.00260 * 4 2 1 6 6 N 1.46904 * 109.47081 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99494 * 293.95014 * 6 5 4 8 8 C 1.50695 * 109.46974 * 299.92749 * 7 6 5 9 9 H 1.07994 * 120.00290 * 4.85069 * 8 7 6 10 10 C 1.37885 * 119.99456 * 184.83984 * 8 7 6 11 11 N 1.31503 * 120.00227 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99493 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47410 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47003 * 120.00453 * 12 10 8 15 15 H 1.48503 * 109.47267 * 240.00293 * 12 10 8 16 16 C 1.46899 * 111.00007 * 169.99735 * 6 5 4 17 17 C 1.50700 * 109.47012 * 199.39478 * 16 6 5 18 18 C 1.33386 * 125.19918 * 84.32499 * 17 16 6 19 19 C 1.38431 * 114.91633 * 179.97438 * 18 17 16 20 20 C 1.33387 * 114.92272 * 359.97438 * 19 18 17 21 21 S 1.75881 * 125.20086 * 264.01783 * 17 16 6 22 22 H 1.09005 * 109.47151 * 299.99796 * 1 2 3 23 23 H 1.08998 * 109.47557 * 59.99395 * 1 2 3 24 24 H 1.08995 * 109.47438 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46767 * 240.00681 * 2 1 3 26 26 H 1.08992 * 109.47391 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47373 * 300.00718 * 3 2 1 28 28 H 1.09005 * 109.46915 * 60.00059 * 3 2 1 29 29 H 1.09000 * 109.47424 * 305.00073 * 4 2 1 30 30 H 1.09003 * 109.47023 * 184.99949 * 4 2 1 31 31 H 1.09000 * 109.47194 * 59.99672 * 5 4 2 32 32 H 1.09003 * 109.46987 * 299.99710 * 5 4 2 33 33 H 1.09001 * 109.47070 * 59.93346 * 7 6 5 34 34 H 1.09006 * 109.46623 * 179.97438 * 7 6 5 35 35 H 0.96999 * 120.00167 * 179.97438 * 11 10 8 36 36 H 1.08997 * 109.47063 * 319.39989 * 16 6 5 37 37 H 1.09004 * 109.47156 * 79.39438 * 16 6 5 38 38 H 1.07994 * 122.54225 * 359.95398 * 18 17 16 39 39 H 1.07998 * 122.53731 * 180.02562 * 19 18 17 40 40 H 1.07996 * 125.20399 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6352 -2.1955 1.1879 6 7 2.1244 -2.8879 2.3876 7 6 3.5927 -2.9292 2.4096 8 6 4.0928 -3.6631 1.1922 9 1 3.3960 -3.9906 0.4349 10 6 5.4402 -3.9163 1.0451 11 7 6.2887 -3.5177 1.9674 12 14 6.0603 -4.8254 -0.4644 13 1 4.9132 -5.1624 -1.3453 14 1 7.0154 -3.9622 -1.2045 15 1 6.7452 -6.0740 -0.0436 16 6 1.5581 -4.2400 2.4827 17 6 1.6763 -4.7355 3.9010 18 6 0.8115 -4.4724 4.8819 19 6 1.1278 -5.0376 6.1054 20 6 2.2490 -5.7600 6.1178 21 16 2.9715 -5.7553 4.5141 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5137 -0.8900 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6054 -0.2618 2.1370 30 1 3.1263 -0.6443 1.2951 31 1 2.0698 -2.6549 0.3001 32 1 0.5489 -2.2724 1.1420 33 1 3.9848 -1.9122 2.4075 34 1 3.9281 -3.4468 3.3084 35 1 7.2365 -3.6962 1.8641 36 1 0.5077 -4.2153 2.1928 37 1 2.1030 -4.9097 1.8173 38 1 -0.0684 -3.8642 4.7330 39 1 0.5128 -4.9044 6.9831 40 1 2.6497 -6.2728 6.9797 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123495780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:08 Heat of formation + Delta-G solvation = 1.411793 kcal Electronic energy + Delta-G solvation = -18537.328250 eV Core-core repulsion = 15863.438662 eV Total energy + Delta-G solvation = -2673.889589 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.47309 -38.23781 -36.64159 -34.51604 -31.80838 -29.85732 -28.40584 -27.92957 -26.19253 -25.09479 -23.56519 -21.60519 -20.72245 -19.84280 -18.61256 -17.67731 -16.90321 -16.58097 -16.18132 -15.96131 -15.47124 -14.92515 -14.54095 -14.38138 -14.03266 -13.54458 -13.47424 -13.35844 -13.17276 -13.09786 -12.92216 -12.75382 -12.63266 -12.22483 -12.14686 -12.05907 -11.90269 -11.71013 -11.45394 -11.39024 -11.28955 -11.16570 -10.55905 -9.45861 -9.26493 -8.96558 -8.11299 -6.28602 0.25471 0.90928 1.32613 1.34777 1.35093 1.44652 2.00676 2.36974 3.13880 3.45403 4.05831 4.09446 4.11130 4.20185 4.33338 4.50628 4.54651 4.63991 4.73273 4.81728 4.84723 4.86075 4.94290 4.95115 5.05786 5.12782 5.22756 5.28035 5.35359 5.36468 5.39731 5.46169 5.54784 5.58125 5.61498 5.78509 5.82316 6.10135 6.28831 6.57555 6.91577 7.40936 8.90830 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.007986 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.501074 B = 3505.265246 C = 5410.016716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.097 4.097 5 C 0.065 3.935 6 N -0.536 5.536 7 C 0.200 3.800 8 C -0.545 4.545 9 H 0.053 0.947 10 C 0.018 3.982 11 N -0.920 5.920 12 Si 0.943 3.057 13 H -0.268 1.268 14 H -0.279 1.279 15 H -0.280 1.280 16 C 0.126 3.874 17 C -0.160 4.160 18 C -0.136 4.136 19 C -0.135 4.135 20 C -0.226 4.226 21 S 0.049 5.951 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.019 0.981 32 H 0.081 0.919 33 H 0.002 0.998 34 H 0.016 0.984 35 H 0.262 0.738 36 H 0.097 0.903 37 H 0.031 0.969 38 H 0.154 0.846 39 H 0.167 0.833 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.690 1.512 2.204 12.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.135 4.135 5 C -0.063 4.063 6 N -0.259 5.259 7 C 0.073 3.927 8 C -0.585 4.585 9 H 0.071 0.929 10 C -0.182 4.182 11 N -0.560 5.560 12 Si 0.769 3.231 13 H -0.192 1.192 14 H -0.205 1.205 15 H -0.206 1.206 16 C -0.003 4.003 17 C -0.278 4.278 18 C -0.167 4.167 19 C -0.166 4.166 20 C -0.362 4.362 21 S 0.313 5.687 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.099 0.901 33 H 0.020 0.980 34 H 0.034 0.966 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.049 0.951 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.372 1.125 2.032 11.607 hybrid contribution 0.308 -0.384 -0.795 0.935 sum -11.064 0.740 1.238 11.158 Atomic orbital electron populations 1.21814 0.93700 1.01919 1.02171 1.21069 0.97052 0.96226 0.97008 1.21787 1.00258 0.95526 1.02307 1.21467 0.99480 0.94429 0.98111 1.22059 0.98931 0.94282 0.91013 1.62497 1.09326 1.15621 1.38462 1.19454 0.83182 0.94820 0.95238 1.21900 0.92673 1.36928 1.06952 0.92869 1.25657 0.97343 0.96509 0.98677 1.70064 1.02941 1.47646 1.35375 0.85736 0.78505 0.78597 0.80286 1.19180 1.20520 1.20626 1.20410 0.99744 0.90318 0.89837 1.24470 0.98206 1.04348 1.00793 1.20323 1.01761 1.02662 0.91951 1.20426 0.97768 0.99228 0.99128 1.25916 1.01059 1.08777 1.00422 1.85069 1.28704 1.49764 1.05212 0.92225 0.91725 0.92669 0.92582 0.94167 0.91328 0.92217 0.91934 0.94875 0.96249 0.90061 0.98042 0.96632 0.92885 0.88468 0.95083 0.82824 0.81528 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.95 71.98 0.64 -2.45 16 2 C -0.09 -2.65 2.92 -10.80 -0.03 -2.68 16 3 C -0.14 -3.52 9.19 71.98 0.66 -2.86 16 4 C -0.10 -3.41 4.61 30.59 0.14 -3.27 16 5 C 0.06 2.42 4.49 86.30 0.39 2.81 16 6 N -0.54 -22.77 4.63 -905.33 -4.19 -26.97 16 7 C 0.20 10.47 4.77 85.55 0.41 10.88 16 8 C -0.55 -30.01 7.28 25.60 0.19 -29.83 16 9 H 0.05 2.90 6.00 -2.91 -0.02 2.89 16 10 C 0.02 1.00 5.46 84.66 0.46 1.47 16 11 N -0.92 -55.06 13.28 21.45 0.28 -54.78 16 12 Si 0.94 44.44 29.54 68.60 2.03 46.46 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 16 C 0.13 4.91 5.35 85.56 0.46 5.37 16 17 C -0.16 -5.95 5.44 24.59 0.13 -5.81 16 18 C -0.14 -4.19 10.05 21.22 0.21 -3.97 16 19 C -0.14 -3.66 10.18 21.22 0.22 -3.44 16 20 C -0.23 -6.63 11.23 66.72 0.75 -5.88 16 21 S 0.05 1.88 22.47 -56.49 -1.27 0.61 16 22 H 0.06 1.24 8.14 -2.38 -0.02 1.23 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.23 6.56 -2.39 -0.02 1.21 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.03 1.40 6.55 -2.39 -0.02 1.39 16 31 H 0.02 0.81 6.21 -2.39 -0.01 0.80 16 32 H 0.08 2.54 6.25 -2.39 -0.01 2.52 16 33 H 0.00 0.09 6.47 -2.39 -0.02 0.07 16 34 H 0.02 0.89 6.74 -2.38 -0.02 0.88 16 35 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.10 3.14 7.74 -2.39 -0.02 3.12 16 37 H 0.03 1.37 6.52 -2.39 -0.02 1.36 16 38 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 39 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 40 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -63.07 329.67 2.48 -60.60 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.00 Total: 13.73 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 4.63 Total: -39.66 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -3.91 Total: -81.74 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.27 Total: 0.61 kcal Total: -63.07 2.48 -60.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123495780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.010 kcal (2) G-P(sol) polarization free energy of solvation -63.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds