Wall clock time and date at job start Mon Mar 30 2020 00:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47209 * 2 1 4 4 H 1.09001 * 109.47274 * 55.96426 * 3 2 1 5 5 C 1.52998 * 109.46813 * 175.96288 * 3 2 1 6 6 C 1.50706 * 109.46728 * 184.99707 * 5 3 2 7 7 C 1.33390 * 125.20069 * 90.00618 * 6 5 3 8 8 C 1.38424 * 114.91700 * 179.97438 * 7 6 5 9 9 C 1.33383 * 114.92311 * 0.23853 * 8 7 6 10 10 S 1.75881 * 125.20364 * 269.95740 * 6 5 3 11 11 N 1.46900 * 109.47070 * 295.95988 * 3 2 1 12 12 C 1.46895 * 111.00171 * 296.37926 * 11 3 2 13 13 C 1.53001 * 109.47439 * 174.60762 * 12 11 3 14 14 C 1.53000 * 109.47398 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46884 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00330 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99551 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00377 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99924 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46723 * 60.00095 * 19 17 15 21 21 H 1.48497 * 109.47165 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46872 * 300.00432 * 19 17 15 23 23 H 1.08995 * 109.46877 * 59.55267 * 1 2 3 24 24 H 1.08994 * 109.47193 * 179.55704 * 1 2 3 25 25 H 1.09001 * 109.46521 * 299.56020 * 1 2 3 26 26 H 1.09000 * 109.46909 * 239.99709 * 2 1 3 27 27 H 1.08998 * 109.46689 * 119.99915 * 2 1 3 28 28 H 1.08997 * 109.47274 * 65.00115 * 5 3 2 29 29 H 1.08993 * 109.47325 * 304.99897 * 5 3 2 30 30 H 1.07995 * 122.53918 * 359.97438 * 7 6 5 31 31 H 1.08003 * 122.53629 * 179.97438 * 8 7 6 32 32 H 1.08003 * 125.20189 * 179.75319 * 9 8 7 33 33 H 1.00899 * 111.00399 * 172.42066 * 11 3 2 34 34 H 1.09001 * 109.47111 * 294.60459 * 12 11 3 35 35 H 1.08997 * 109.47495 * 54.60537 * 12 11 3 36 36 H 1.09001 * 109.46721 * 299.99934 * 13 12 11 37 37 H 1.08997 * 109.46961 * 59.99447 * 13 12 11 38 38 H 1.08999 * 109.46686 * 299.99730 * 14 13 12 39 39 H 1.08993 * 109.46965 * 59.99767 * 14 13 12 40 40 H 0.96999 * 119.99718 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6189 1.9768 0.8516 5 6 3.5667 1.4435 0.1016 6 6 4.0608 2.8619 0.2251 7 6 4.2409 3.5161 1.3736 8 6 4.7043 4.8135 1.2392 9 6 4.8958 5.2146 -0.0184 10 16 4.4894 3.9074 -1.1227 11 7 1.6317 2.1062 -1.2452 12 6 2.2515 1.4639 -2.4119 13 6 1.7005 2.0930 -3.6932 14 6 2.3465 1.4244 -4.9083 15 6 1.8033 2.0437 -6.1703 16 1 1.0703 2.8347 -6.1115 17 6 2.2421 1.6004 -7.3999 18 7 3.1344 0.6368 -7.4715 19 14 1.5683 2.3675 -8.9642 20 1 1.8765 3.8202 -8.9756 21 1 2.1954 1.7186 -10.1436 22 1 0.0971 2.1731 -9.0168 23 1 -0.3633 0.5207 -0.8859 24 1 -0.3633 -1.0276 -0.0079 25 1 -0.3632 0.5070 0.8939 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9907 0.9878 -0.7932 29 1 3.8729 0.8743 0.9792 30 1 4.0403 3.0675 2.3353 31 1 4.8923 5.4541 2.0882 32 1 5.2486 6.1918 -0.3134 33 1 1.8478 3.0914 -1.2176 34 1 3.3316 1.6050 -2.3733 35 1 2.0238 0.3980 -2.4036 36 1 0.6204 1.9518 -3.7318 37 1 1.9282 3.1589 -3.7015 38 1 3.4266 1.5660 -4.8694 39 1 2.1192 0.3585 -4.9001 40 1 3.4428 0.3248 -8.3366 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167254582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:46 Heat of formation + Delta-G solvation = 6.142558 kcal Electronic energy + Delta-G solvation = -18116.346528 eV Core-core repulsion = 15442.662080 eV Total energy + Delta-G solvation = -2673.684447 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.76172 -37.25112 -34.12991 -32.32982 -31.72410 -30.16272 -27.51764 -25.99715 -24.37354 -22.91636 -22.47007 -20.32057 -19.56249 -19.11341 -17.06866 -16.38190 -15.94224 -15.55147 -14.84206 -14.41640 -14.17742 -13.98262 -13.37179 -13.16124 -12.97500 -12.62744 -12.58877 -12.25590 -11.99033 -11.74442 -11.59798 -11.17344 -11.11334 -10.82685 -10.77364 -10.69620 -10.55518 -10.48537 -10.23859 -9.60787 -9.26967 -9.01983 -8.78573 -8.47389 -8.29455 -8.00308 -5.95051 -3.96721 0.97459 1.64499 2.03293 2.68939 3.36722 3.40649 3.43608 4.43160 4.53291 4.62248 4.96535 5.01692 5.14930 5.24341 5.32644 5.40735 5.49470 5.51730 5.64094 5.69209 5.77631 5.90870 5.94361 6.02072 6.11069 6.12404 6.25432 6.30766 6.43245 6.49849 6.54226 6.78866 6.86923 7.20801 7.42207 7.68978 7.73945 7.89904 8.05802 8.49559 9.10291 9.66929 11.16367 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.004770 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.023930 B = 5868.278082 C = 7014.735513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.094 3.906 4 H 0.079 0.921 5 C -0.092 4.092 6 C -0.172 4.172 7 C -0.147 4.147 8 C -0.137 4.137 9 C -0.226 4.226 10 S 0.123 5.877 11 N -0.679 5.679 12 C 0.053 3.947 13 C -0.105 4.105 14 C 0.023 3.977 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.161 0.839 33 H 0.337 0.663 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.013 0.987 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 3.862 19.538 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.018 4.018 4 H 0.097 0.903 5 C -0.133 4.133 6 C -0.290 4.290 7 C -0.177 4.177 8 C -0.167 4.167 9 C -0.362 4.362 10 S 0.387 5.613 11 N -0.310 5.310 12 C -0.075 4.075 13 C -0.143 4.143 14 C -0.014 4.014 15 C -0.556 4.556 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.090 0.910 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.178 0.822 33 H 0.156 0.844 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.357 3.261 17.772 18.119 hybrid contribution 0.787 0.987 0.695 1.441 sum 2.144 4.248 18.467 19.070 Atomic orbital electron populations 1.21631 0.95033 1.00726 1.02556 1.21590 0.97069 0.95058 1.01740 1.21651 0.90314 0.96070 0.93732 0.90315 1.21061 0.98524 0.89956 1.03775 1.24589 1.07426 1.00863 0.96102 1.20054 1.04413 0.94842 0.98430 1.20106 1.03129 0.96420 0.97074 1.25720 1.09944 1.03712 0.96788 1.85006 1.63158 1.04210 1.08890 1.60698 1.61924 1.06906 1.01465 1.22220 0.95541 0.99396 0.90373 1.21594 1.00318 0.99059 0.93326 1.19049 0.95649 0.95748 0.90976 1.21223 1.23845 1.19429 0.91058 0.92764 1.25017 0.95164 0.95140 0.99125 1.69959 1.30887 1.28050 1.24770 0.86681 0.79236 0.79446 0.82778 1.20289 1.21343 1.20246 0.91013 0.93630 0.93531 0.91383 0.92297 0.89914 0.89915 0.84697 0.84724 0.82164 0.84387 0.95828 0.91121 0.92677 0.93673 0.96896 0.96733 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.80 37.16 0.36 -1.29 16 2 C -0.12 -1.34 5.27 -26.73 -0.14 -1.48 16 3 C 0.09 1.12 2.53 -67.72 -0.17 0.95 16 4 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.09 -1.07 4.87 -27.88 -0.14 -1.21 16 6 C -0.17 -2.09 5.16 -36.00 -0.19 -2.27 16 7 C -0.15 -1.60 10.05 -41.21 -0.41 -2.02 16 8 C -0.14 -1.43 10.18 -41.21 -0.42 -1.85 16 9 C -0.23 -2.52 11.23 29.04 0.33 -2.20 16 10 S 0.12 1.63 21.84 -107.50 -2.35 -0.72 16 11 N -0.68 -9.89 5.75 -106.73 -0.61 -10.50 16 12 C 0.05 0.91 4.83 -3.83 -0.02 0.89 16 13 C -0.10 -2.21 5.46 -26.73 -0.15 -2.35 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 19 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.07 0.98 7.71 -51.93 -0.40 0.58 16 24 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.87 6.19 -51.93 -0.32 0.55 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.09 6.19 -51.93 -0.32 0.76 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.34 4.96 7.38 -39.29 -0.29 4.67 16 34 H 0.02 0.41 5.83 -51.93 -0.30 0.11 16 35 H 0.07 1.24 6.07 -51.93 -0.32 0.92 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 333.52 15.07 5.03 5.03 Total: -1.00 -30.07 333.52 -10.28 -40.35 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.57 Total: 1.46 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -1.49 Total: -26.02 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.12 Total: -37.06 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.35 Total: -0.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.07 -10.28 -40.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167254582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.490 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds