Wall clock time and date at job start Mon Mar 30 2020 00:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47209 * 2 1 4 4 H 1.09001 * 109.47274 * 55.96426 * 3 2 1 5 5 C 1.52998 * 109.46813 * 175.96288 * 3 2 1 6 6 C 1.50706 * 109.46728 * 184.99707 * 5 3 2 7 7 C 1.33390 * 125.20069 * 90.00618 * 6 5 3 8 8 C 1.38424 * 114.91700 * 179.97438 * 7 6 5 9 9 C 1.33383 * 114.92311 * 0.23853 * 8 7 6 10 10 S 1.75881 * 125.20364 * 269.95740 * 6 5 3 11 11 N 1.46900 * 109.47070 * 295.95988 * 3 2 1 12 12 C 1.46895 * 111.00171 * 296.37926 * 11 3 2 13 13 C 1.53001 * 109.47439 * 174.60762 * 12 11 3 14 14 C 1.53000 * 109.47398 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46884 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00330 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99551 * 179.97438 * 15 14 13 18 18 N 1.31519 * 120.00377 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99924 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46723 * 60.00095 * 19 17 15 21 21 H 1.48497 * 109.47165 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46872 * 300.00432 * 19 17 15 23 23 H 1.08995 * 109.46877 * 59.55267 * 1 2 3 24 24 H 1.08994 * 109.47193 * 179.55704 * 1 2 3 25 25 H 1.09001 * 109.46521 * 299.56020 * 1 2 3 26 26 H 1.09000 * 109.46909 * 239.99709 * 2 1 3 27 27 H 1.08998 * 109.46689 * 119.99915 * 2 1 3 28 28 H 1.08997 * 109.47274 * 65.00115 * 5 3 2 29 29 H 1.08993 * 109.47325 * 304.99897 * 5 3 2 30 30 H 1.07995 * 122.53918 * 359.97438 * 7 6 5 31 31 H 1.08003 * 122.53629 * 179.97438 * 8 7 6 32 32 H 1.08003 * 125.20189 * 179.75319 * 9 8 7 33 33 H 1.00899 * 111.00399 * 172.42066 * 11 3 2 34 34 H 1.09001 * 109.47111 * 294.60459 * 12 11 3 35 35 H 1.08997 * 109.47495 * 54.60537 * 12 11 3 36 36 H 1.09001 * 109.46721 * 299.99934 * 13 12 11 37 37 H 1.08997 * 109.46961 * 59.99447 * 13 12 11 38 38 H 1.08999 * 109.46686 * 299.99730 * 14 13 12 39 39 H 1.08993 * 109.46965 * 59.99767 * 14 13 12 40 40 H 0.96999 * 119.99718 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6189 1.9768 0.8516 5 6 3.5667 1.4435 0.1016 6 6 4.0608 2.8619 0.2251 7 6 4.2409 3.5161 1.3736 8 6 4.7043 4.8135 1.2392 9 6 4.8958 5.2146 -0.0184 10 16 4.4894 3.9074 -1.1227 11 7 1.6317 2.1062 -1.2452 12 6 2.2515 1.4639 -2.4119 13 6 1.7005 2.0930 -3.6932 14 6 2.3465 1.4244 -4.9083 15 6 1.8033 2.0437 -6.1703 16 1 1.0703 2.8347 -6.1115 17 6 2.2421 1.6004 -7.3999 18 7 3.1344 0.6368 -7.4715 19 14 1.5683 2.3675 -8.9642 20 1 1.8765 3.8202 -8.9756 21 1 2.1954 1.7186 -10.1436 22 1 0.0971 2.1731 -9.0168 23 1 -0.3633 0.5207 -0.8859 24 1 -0.3633 -1.0276 -0.0079 25 1 -0.3632 0.5070 0.8939 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9907 0.9878 -0.7932 29 1 3.8729 0.8743 0.9792 30 1 4.0403 3.0675 2.3353 31 1 4.8923 5.4541 2.0882 32 1 5.2486 6.1918 -0.3134 33 1 1.8478 3.0914 -1.2176 34 1 3.3316 1.6050 -2.3733 35 1 2.0238 0.3980 -2.4036 36 1 0.6204 1.9518 -3.7318 37 1 1.9282 3.1589 -3.7015 38 1 3.4266 1.5660 -4.8694 39 1 2.1192 0.3585 -4.9001 40 1 3.4428 0.3248 -8.3366 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167254582.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:45 Heat of formation + Delta-G solvation = -10.438507 kcal Electronic energy + Delta-G solvation = -18117.065536 eV Core-core repulsion = 15442.662080 eV Total energy + Delta-G solvation = -2674.403456 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77901 -38.22298 -35.98293 -34.10653 -32.67725 -31.68647 -28.71780 -27.58814 -25.40168 -24.60079 -23.37424 -22.13447 -20.64450 -19.99111 -18.48653 -17.95412 -17.30515 -16.60479 -16.39095 -15.97218 -15.44292 -15.17188 -14.53864 -14.30956 -14.20260 -13.88478 -13.70082 -13.53557 -13.32960 -13.19444 -12.86735 -12.73788 -12.52528 -12.33364 -12.20694 -12.09717 -11.74988 -11.54011 -11.52722 -11.36225 -11.23689 -11.07245 -10.54141 -9.74662 -9.44592 -9.13523 -8.19213 -6.30119 0.10390 0.73591 1.15665 1.39392 1.42821 1.50699 1.86860 2.41367 3.13661 3.30486 3.69310 4.02374 4.16298 4.20593 4.25827 4.35449 4.44704 4.47390 4.65818 4.72325 4.75311 4.76065 4.82402 4.92968 4.99224 5.08412 5.16219 5.22349 5.24612 5.28461 5.39336 5.43629 5.51945 5.60658 5.65158 5.76566 5.86761 6.13874 6.29752 6.49750 6.86171 7.38826 8.92511 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.004770 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.023930 B = 5868.278082 C = 7014.735513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.097 3.903 4 H 0.095 0.905 5 C -0.087 4.087 6 C -0.179 4.179 7 C -0.140 4.140 8 C -0.135 4.135 9 C -0.222 4.222 10 S 0.044 5.956 11 N -0.679 5.679 12 C 0.072 3.928 13 C -0.090 4.090 14 C 0.029 3.971 15 C -0.543 4.543 16 H 0.057 0.943 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.267 1.267 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.178 0.822 33 H 0.338 0.662 34 H 0.020 0.980 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.044 0.956 38 H -0.012 1.012 39 H -0.010 1.010 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 4.777 21.410 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.014 4.014 4 H 0.113 0.887 5 C -0.127 4.127 6 C -0.296 4.296 7 C -0.170 4.170 8 C -0.165 4.165 9 C -0.357 4.357 10 S 0.307 5.693 11 N -0.309 5.309 12 C -0.057 4.057 13 C -0.128 4.128 14 C -0.008 4.008 15 C -0.581 4.581 16 H 0.076 0.924 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.788 3.212 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.192 1.192 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.179 0.821 31 H 0.182 0.818 32 H 0.195 0.805 33 H 0.156 0.844 34 H 0.038 0.962 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.006 0.994 39 H 0.009 0.991 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.822 4.181 19.668 20.124 hybrid contribution 0.981 0.707 0.210 1.227 sum 1.803 4.888 19.878 20.549 Atomic orbital electron populations 1.21594 0.95093 1.01026 1.01965 1.21607 0.96968 0.94711 1.02077 1.21732 0.90831 0.96253 0.92555 0.88746 1.20999 0.97854 0.90042 1.03853 1.24607 1.08622 1.00847 0.95526 1.20414 1.02778 0.94872 0.98898 1.20487 1.01878 0.96610 0.97551 1.25922 1.09988 1.03499 0.96313 1.85297 1.65107 1.07050 1.11844 1.60633 1.61672 1.06956 1.01686 1.21845 0.95162 0.98820 0.89900 1.21342 0.99518 0.98672 0.93289 1.18926 0.94361 0.94619 0.92922 1.21655 1.24209 1.19820 0.92388 0.92426 1.25970 0.95287 0.95513 1.02949 1.70094 1.32051 1.29351 1.25858 0.85524 0.78859 0.78787 0.78031 1.19222 1.20675 1.19160 0.93551 0.92932 0.92107 0.93289 0.89683 0.92064 0.87458 0.82103 0.81802 0.80495 0.84355 0.96235 0.91584 0.93121 0.93733 0.99382 0.99144 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.80 71.98 0.71 -2.34 16 2 C -0.12 -2.48 5.27 30.60 0.16 -2.32 16 3 C 0.10 2.17 2.53 44.91 0.11 2.29 16 4 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 5 C -0.09 -1.89 4.87 29.85 0.15 -1.75 16 6 C -0.18 -4.09 5.16 24.59 0.13 -3.97 16 7 C -0.14 -2.62 10.05 21.22 0.21 -2.41 16 8 C -0.14 -2.43 10.18 21.21 0.22 -2.22 16 9 C -0.22 -4.64 11.23 66.72 0.75 -3.89 16 10 S 0.04 1.18 21.84 -56.49 -1.23 -0.06 16 11 N -0.68 -19.62 5.75 -491.59 -2.82 -22.44 16 12 C 0.07 2.55 4.83 86.30 0.42 2.96 16 13 C -0.09 -3.93 5.46 30.59 0.17 -3.77 16 14 C 0.03 1.61 4.97 29.85 0.15 1.76 16 15 C -0.54 -32.03 9.11 25.60 0.23 -31.79 16 16 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 17 C 0.00 0.03 5.46 84.65 0.46 0.49 16 18 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 19 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H 0.05 1.24 7.71 -2.39 -0.02 1.23 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.24 6.19 -2.39 -0.01 1.23 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.62 6.19 -2.39 -0.01 1.60 16 29 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.34 9.87 7.38 -89.69 -0.66 9.21 16 34 H 0.02 0.72 5.83 -2.39 -0.01 0.70 16 35 H 0.07 2.40 6.07 -2.39 -0.01 2.39 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -65.97 333.52 2.46 -63.52 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.34 Total: 16.39 kcal Atomic # 6 Polarization: -50.82 SS G_CDS: 3.86 Total: -46.96 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -2.54 Total: -80.24 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.23 Total: -0.06 kcal Total: -65.97 2.46 -63.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167254582.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.080 kcal (2) G-P(sol) polarization free energy of solvation -65.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds