Wall clock time and date at job start Mon Mar 30 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46786 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46980 * 304.99719 * 4 3 2 6 6 N 1.46906 * 109.47281 * 64.99922 * 4 3 2 7 7 C 1.46901 * 110.99793 * 205.00148 * 6 4 3 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47116 * 59.99479 * 14 12 10 16 16 H 1.48490 * 109.47381 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46756 * 300.00079 * 14 12 10 18 18 C 1.50694 * 109.46992 * 184.99921 * 4 3 2 19 19 C 1.38423 * 122.54161 * 100.00216 * 18 4 3 20 20 C 1.33392 * 114.92210 * 179.97438 * 19 18 4 21 21 S 1.75883 * 109.59419 * 359.97438 * 20 19 18 22 22 C 1.33392 * 122.54150 * 279.70491 * 18 4 3 23 23 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46870 * 300.00171 * 1 2 3 25 25 H 1.08999 * 109.46976 * 60.00021 * 1 2 3 26 26 H 1.09001 * 109.46870 * 239.99829 * 2 1 3 27 27 H 1.08999 * 109.46976 * 119.99979 * 2 1 3 28 28 H 1.08996 * 109.47160 * 59.99819 * 3 2 1 29 29 H 1.09003 * 109.46780 * 299.99869 * 3 2 1 30 30 H 1.00899 * 110.99995 * 81.04546 * 6 4 3 31 31 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 32 32 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 33 33 H 1.09001 * 109.47194 * 299.99524 * 8 7 6 34 34 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 35 35 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 36 36 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 37 37 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 38 38 H 1.08000 * 122.53897 * 359.94733 * 19 18 4 39 39 H 1.07999 * 125.20271 * 179.97438 * 20 19 18 40 40 H 1.08007 * 125.20128 * 0.03456 * 22 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 7 4.0592 0.8573 -1.2562 7 6 5.4066 0.2973 -1.0861 8 6 5.8812 -0.3010 -2.4119 9 6 7.2843 -0.8848 -2.2347 10 6 7.7516 -1.4746 -3.5403 11 1 7.1117 -1.4372 -4.4096 12 6 8.9961 -2.0621 -3.6253 13 7 9.7755 -2.1072 -2.5669 14 14 9.5757 -2.7926 -5.2439 15 1 9.6080 -1.7315 -6.2825 16 1 10.9373 -3.3593 -5.0719 17 1 8.6418 -3.8681 -5.6641 18 6 4.0724 2.8578 0.1232 19 6 4.5122 3.3895 1.3231 20 6 4.9245 4.6565 1.2591 21 16 4.7649 5.2460 -0.3904 22 6 4.1324 3.6914 -0.9165 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 4.0412 1.5360 -2.0026 31 1 5.3830 -0.4812 -0.3235 32 1 6.0920 1.0869 -0.7782 33 1 5.1959 -1.0905 -2.7203 34 1 5.9049 0.4777 -3.1741 35 1 7.9699 -0.0956 -1.9261 36 1 7.2602 -1.6637 -1.4725 37 1 10.6512 -2.5201 -2.6269 38 1 4.5205 2.8217 2.2418 39 1 5.2989 5.2323 2.0925 40 1 3.8363 3.4493 -1.9265 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187697406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:53 Heat of formation + Delta-G solvation = 1.978850 kcal Electronic energy + Delta-G solvation = -17780.299153 eV Core-core repulsion = 15106.434154 eV Total energy + Delta-G solvation = -2673.864999 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.23553 -36.06507 -34.65111 -33.11688 -31.39213 -29.33124 -28.32289 -25.73946 -24.79583 -22.67809 -21.70640 -20.78873 -19.97462 -18.67862 -17.87694 -16.25781 -15.90965 -15.20016 -14.68827 -14.50458 -14.32514 -13.77037 -13.40818 -13.32294 -12.96061 -12.73935 -12.51811 -12.25083 -12.12626 -11.72839 -11.54385 -11.35632 -11.06058 -10.97583 -10.82157 -10.60561 -10.54823 -10.51655 -10.44604 -9.66062 -9.30554 -9.03299 -8.86795 -8.43596 -8.30674 -8.16065 -5.96022 -3.98027 0.94177 1.60164 1.91898 2.63969 3.36004 3.40019 3.42804 4.41269 4.52668 4.68293 4.92802 5.08400 5.11823 5.22580 5.31338 5.38854 5.39682 5.54914 5.68030 5.74647 5.83873 5.88104 5.93266 5.97262 6.05056 6.14441 6.24928 6.31764 6.38045 6.40808 6.52771 6.77099 6.83184 7.17936 7.38437 7.64670 7.72454 7.88193 8.04647 8.47896 9.09006 9.65693 11.15429 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.004138 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.446164 B = 6765.003729 C = 8004.760330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.097 4.097 4 C 0.143 3.857 5 H 0.084 0.916 6 N -0.677 5.677 7 C 0.060 3.940 8 C -0.106 4.106 9 C 0.023 3.977 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.214 4.214 21 S 0.088 5.912 22 C -0.208 4.208 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.336 0.664 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.013 0.987 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.139 0.861 39 H 0.162 0.838 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.470 12.536 8.223 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.135 4.135 4 C 0.029 3.971 5 H 0.102 0.898 6 N -0.307 5.307 7 C -0.069 4.069 8 C -0.144 4.144 9 C -0.015 4.015 10 C -0.557 4.557 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.138 4.138 19 C -0.157 4.157 20 C -0.349 4.349 21 S 0.352 5.648 22 C -0.344 4.344 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.157 0.843 39 H 0.180 0.820 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.292 13.257 7.653 21.637 hybrid contribution 0.819 -0.819 -0.065 1.161 sum -14.472 12.438 7.588 20.536 Atomic orbital electron populations 1.21786 0.96680 1.01238 1.01179 1.21443 0.94575 0.96580 1.03009 1.21539 0.93225 0.97314 1.01438 1.20417 0.94969 0.87519 0.94155 0.89752 1.60795 1.26318 1.38256 1.05299 1.22142 0.86858 0.97767 1.00119 1.21609 0.99642 0.99234 0.93917 1.19050 0.89739 0.95661 0.97031 1.21223 1.00858 1.37106 0.96511 0.92767 1.25024 0.96835 0.96239 0.96374 1.69962 1.09872 1.44994 1.28807 0.86665 0.77752 0.79497 0.84129 1.20288 1.21321 1.20224 1.19867 1.02047 0.99167 0.92711 1.20120 1.01624 0.94968 0.98967 1.25587 1.09479 0.99781 1.00077 1.84223 1.63305 1.14470 1.02828 1.25349 1.09180 0.96631 1.03203 0.93022 0.93397 0.93020 0.90233 0.92623 0.92289 0.92061 0.84513 0.91529 0.95714 0.92600 0.93831 0.96884 0.96622 0.93017 0.84346 0.82047 0.81962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.27 5.82 -26.73 -0.16 -1.43 16 3 C -0.10 -1.03 4.87 -26.73 -0.13 -1.16 16 4 C 0.14 1.73 2.31 -68.86 -0.16 1.58 16 5 H 0.08 1.07 7.74 -51.93 -0.40 0.67 16 6 N -0.68 -9.62 5.69 -107.95 -0.61 -10.23 16 7 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 8 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 11 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.12 -1.49 4.62 -106.25 -0.49 -1.98 16 19 C -0.13 -1.42 9.95 -41.21 -0.41 -1.83 16 20 C -0.21 -2.24 11.23 29.04 0.33 -1.92 16 21 S 0.09 0.95 23.34 -107.50 -2.51 -1.56 16 22 C -0.21 -2.44 10.22 29.04 0.30 -2.14 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.34 4.59 6.71 -39.29 -0.26 4.33 16 31 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 32 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 40 H 0.16 1.74 6.97 -52.48 -0.37 1.37 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -30.21 341.35 -10.22 -40.43 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.88 Total: 0.50 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -1.07 Total: -24.57 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.12 Total: -36.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.21 -10.22 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187697406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.405 kcal (2) G-P(sol) polarization free energy of solvation -30.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds