Wall clock time and date at job start Mon Mar 30 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46977 * 2 1 4 4 C 1.53000 * 109.46786 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46980 * 304.99719 * 4 3 2 6 6 N 1.46906 * 109.47281 * 64.99922 * 4 3 2 7 7 C 1.46901 * 110.99793 * 205.00148 * 6 4 3 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47116 * 59.99479 * 14 12 10 16 16 H 1.48490 * 109.47381 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46756 * 300.00079 * 14 12 10 18 18 C 1.50694 * 109.46992 * 184.99921 * 4 3 2 19 19 C 1.38423 * 122.54161 * 100.00216 * 18 4 3 20 20 C 1.33392 * 114.92210 * 179.97438 * 19 18 4 21 21 S 1.75883 * 109.59419 * 359.97438 * 20 19 18 22 22 C 1.33392 * 122.54150 * 279.70491 * 18 4 3 23 23 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46870 * 300.00171 * 1 2 3 25 25 H 1.08999 * 109.46976 * 60.00021 * 1 2 3 26 26 H 1.09001 * 109.46870 * 239.99829 * 2 1 3 27 27 H 1.08999 * 109.46976 * 119.99979 * 2 1 3 28 28 H 1.08996 * 109.47160 * 59.99819 * 3 2 1 29 29 H 1.09003 * 109.46780 * 299.99869 * 3 2 1 30 30 H 1.00899 * 110.99995 * 81.04546 * 6 4 3 31 31 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 32 32 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 33 33 H 1.09001 * 109.47194 * 299.99524 * 8 7 6 34 34 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 35 35 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 36 36 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 37 37 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 38 38 H 1.08000 * 122.53897 * 359.94733 * 19 18 4 39 39 H 1.07999 * 125.20271 * 179.97438 * 20 19 18 40 40 H 1.08007 * 125.20128 * 0.03456 * 22 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 7 4.0592 0.8573 -1.2562 7 6 5.4066 0.2973 -1.0861 8 6 5.8812 -0.3010 -2.4119 9 6 7.2843 -0.8848 -2.2347 10 6 7.7516 -1.4746 -3.5403 11 1 7.1117 -1.4372 -4.4096 12 6 8.9961 -2.0621 -3.6253 13 7 9.7755 -2.1072 -2.5669 14 14 9.5757 -2.7926 -5.2439 15 1 9.6080 -1.7315 -6.2825 16 1 10.9373 -3.3593 -5.0719 17 1 8.6418 -3.8681 -5.6641 18 6 4.0724 2.8578 0.1232 19 6 4.5122 3.3895 1.3231 20 6 4.9245 4.6565 1.2591 21 16 4.7649 5.2460 -0.3904 22 6 4.1324 3.6914 -0.9165 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 4.0412 1.5360 -2.0026 31 1 5.3830 -0.4812 -0.3235 32 1 6.0920 1.0869 -0.7782 33 1 5.1959 -1.0905 -2.7203 34 1 5.9049 0.4777 -3.1741 35 1 7.9699 -0.0956 -1.9261 36 1 7.2602 -1.6637 -1.4725 37 1 10.6512 -2.5201 -2.6269 38 1 4.5205 2.8217 2.2418 39 1 5.2989 5.2323 2.0925 40 1 3.8363 3.4493 -1.9265 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187697406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:53 Heat of formation + Delta-G solvation = -14.202658 kcal Electronic energy + Delta-G solvation = -17781.000836 eV Core-core repulsion = 15106.434154 eV Total energy + Delta-G solvation = -2674.566682 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20263 -37.23115 -36.03427 -34.81110 -32.98732 -30.58225 -29.32291 -27.51187 -25.67443 -24.38052 -22.71082 -22.08469 -21.37982 -19.59494 -18.80748 -18.42225 -16.94107 -16.56376 -16.23398 -15.84558 -15.57075 -14.98399 -14.43669 -14.41892 -14.10056 -13.82353 -13.76680 -13.65228 -13.30447 -13.22531 -12.89318 -12.71526 -12.46109 -12.42625 -12.21746 -11.92190 -11.84883 -11.64734 -11.43805 -11.39238 -11.33917 -11.06063 -10.54577 -9.74168 -9.40280 -9.26490 -8.19571 -6.30810 0.07949 0.75868 1.06514 1.40025 1.43412 1.51340 1.75663 2.41417 3.13446 3.26493 3.78412 4.06842 4.18867 4.24263 4.30212 4.40160 4.42043 4.45853 4.60535 4.71507 4.72839 4.86083 4.91363 4.99086 5.03675 5.08634 5.13313 5.18376 5.25785 5.35911 5.39148 5.47912 5.50350 5.55477 5.65940 5.75666 5.86150 6.11199 6.27809 6.48189 6.85917 7.38429 8.92253 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.004138 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.446164 B = 6765.003729 C = 8004.760330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.088 4.088 4 C 0.145 3.855 5 H 0.079 0.921 6 N -0.672 5.672 7 C 0.077 3.923 8 C -0.091 4.091 9 C 0.026 3.974 10 C -0.544 4.544 11 H 0.059 0.941 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.266 1.266 18 C -0.133 4.133 19 C -0.143 4.143 20 C -0.212 4.212 21 S 0.095 5.905 22 C -0.223 4.223 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.341 0.659 31 H 0.061 0.939 32 H 0.014 0.986 33 H 0.054 0.946 34 H 0.047 0.953 35 H -0.013 1.013 36 H -0.009 1.009 37 H 0.263 0.737 38 H 0.151 0.849 39 H 0.185 0.815 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.400 13.093 7.778 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.126 4.126 4 C 0.033 3.967 5 H 0.097 0.903 6 N -0.302 5.302 7 C -0.052 4.052 8 C -0.129 4.129 9 C -0.011 4.011 10 C -0.582 4.582 11 H 0.078 0.922 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.790 3.210 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.147 4.147 19 C -0.173 4.173 20 C -0.347 4.347 21 S 0.359 5.641 22 C -0.359 4.359 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.005 0.995 36 H 0.009 0.991 37 H 0.072 0.928 38 H 0.169 0.831 39 H 0.202 0.798 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.246 13.828 7.208 22.519 hybrid contribution 1.111 -0.952 0.123 1.468 sum -15.136 12.875 7.331 21.180 Atomic orbital electron populations 1.21753 0.95357 1.01645 1.01795 1.21408 0.95751 0.96390 1.01938 1.21473 0.91770 0.97323 1.02062 1.20424 0.95989 0.87635 0.92694 0.90275 1.60731 1.23828 1.39010 1.06675 1.21788 0.88402 0.97282 0.97750 1.21357 0.96382 0.99150 0.95989 1.18952 0.92393 0.94217 0.95558 1.21670 1.01478 1.37526 0.97486 0.92232 1.25993 0.96933 0.96522 1.00382 1.70100 1.10331 1.45772 1.31250 0.85498 0.77365 0.78924 0.79255 1.19166 1.20761 1.19113 1.19898 1.02549 0.98948 0.93297 1.20315 1.02169 0.95572 0.99272 1.25926 1.08571 0.99716 1.00528 1.84191 1.62917 1.13835 1.03158 1.25530 1.09533 0.97259 1.03563 0.92777 0.92362 0.92798 0.92180 0.92821 0.91052 0.91931 0.83954 0.92018 0.96736 0.92686 0.93404 0.99451 0.99067 0.92783 0.83148 0.79776 0.81409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.91 71.98 0.71 -1.79 16 2 C -0.12 -2.39 5.82 30.60 0.18 -2.22 16 3 C -0.09 -1.74 4.87 30.59 0.15 -1.59 16 4 C 0.15 3.41 2.31 44.17 0.10 3.51 16 5 H 0.08 1.95 7.74 -2.39 -0.02 1.93 16 6 N -0.67 -18.72 5.69 -495.44 -2.82 -21.54 16 7 C 0.08 2.71 5.48 86.30 0.47 3.18 16 8 C -0.09 -3.84 5.41 30.59 0.17 -3.68 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.54 -31.74 9.11 25.60 0.23 -31.50 16 11 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 12 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 13 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 14 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 C -0.13 -3.05 4.62 -20.92 -0.10 -3.15 16 19 C -0.14 -3.02 9.95 21.22 0.21 -2.81 16 20 C -0.21 -4.08 11.23 66.72 0.75 -3.33 16 21 S 0.10 1.93 23.34 -56.49 -1.32 0.61 16 22 C -0.22 -5.01 10.22 66.72 0.68 -4.32 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 1.46 7.75 -2.39 -0.02 1.45 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.34 9.03 6.71 -89.69 -0.60 8.43 16 31 H 0.06 2.23 8.06 -2.39 -0.02 2.21 16 32 H 0.01 0.54 8.00 -2.39 -0.02 0.52 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 35 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 36 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.17 3.44 6.97 -2.91 -0.02 3.42 16 Total: -1.00 -64.42 341.35 2.73 -61.69 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.39 Total: 15.65 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 4.17 Total: -45.70 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.53 Total: -79.21 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.32 Total: 0.61 kcal Total: -64.42 2.73 -61.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187697406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.486 kcal (2) G-P(sol) polarization free energy of solvation -64.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds