Wall clock time and date at job start Mon Mar 30 2020 00:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46902 * 109.46796 * 2 1 4 4 C 1.46898 * 110.99859 * 196.15320 * 3 2 1 5 5 C 1.52994 * 109.47270 * 66.04430 * 4 3 2 6 6 C 1.50705 * 109.47341 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99419 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99999 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00073 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99681 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47168 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47053 * 119.99528 * 10 8 6 13 13 H 1.48498 * 109.46952 * 239.99675 * 10 8 6 14 14 C 1.46897 * 111.00083 * 72.19839 * 3 2 1 15 15 H 1.09001 * 109.46953 * 313.90238 * 14 3 2 16 16 C 1.53000 * 109.47443 * 73.90572 * 14 3 2 17 17 C 1.52998 * 109.46997 * 193.90504 * 14 3 2 18 18 C 1.50705 * 109.47330 * 65.79362 * 17 14 3 19 19 C 1.38423 * 122.53827 * 92.93928 * 18 17 14 20 20 C 1.33392 * 114.91807 * 179.97438 * 19 18 17 21 21 S 1.75881 * 109.59430 * 359.97438 * 20 19 18 22 22 C 1.33391 * 122.53847 * 272.65342 * 18 17 14 23 23 H 1.08999 * 109.46919 * 300.63676 * 1 2 3 24 24 H 1.08994 * 109.47062 * 60.63928 * 1 2 3 25 25 H 1.08996 * 109.46703 * 180.64148 * 1 2 3 26 26 H 1.08998 * 109.46960 * 240.00298 * 2 1 3 27 27 H 1.08999 * 109.47245 * 119.99564 * 2 1 3 28 28 H 1.09000 * 109.47440 * 186.04670 * 4 3 2 29 29 H 1.09004 * 109.46971 * 306.04096 * 4 3 2 30 30 H 1.09000 * 109.47515 * 300.00138 * 5 4 3 31 31 H 1.09004 * 109.47396 * 59.99926 * 5 4 3 32 32 H 0.97004 * 119.99931 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.46807 * 59.99932 * 16 14 3 34 34 H 1.08993 * 109.47486 * 180.02562 * 16 14 3 35 35 H 1.09002 * 109.46982 * 300.00262 * 16 14 3 36 36 H 1.09005 * 109.46979 * 185.78935 * 17 14 3 37 37 H 1.08995 * 109.47274 * 305.79276 * 17 14 3 38 38 H 1.07994 * 122.54312 * 0.02562 * 19 18 17 39 39 H 1.08001 * 125.19936 * 179.97438 * 20 19 18 40 40 H 1.08001 * 125.20001 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4371 1.4423 -0.3815 5 6 3.5913 1.0017 -1.8385 6 6 5.0455 1.0599 -2.2298 7 1 5.7856 1.3796 -1.5111 8 6 5.4309 0.7060 -3.5054 9 7 4.5295 0.3172 -4.3806 10 14 7.2334 0.7788 -3.9905 11 1 8.0389 1.2451 -2.8334 12 1 7.6908 -0.5734 -4.3998 13 1 7.4031 1.7230 -5.1240 14 6 1.7999 2.0211 1.3057 15 1 0.7854 1.8122 1.6455 16 6 2.8019 1.4648 2.3193 17 6 1.9927 3.5333 1.1753 18 6 0.9161 4.1023 0.2873 19 6 -0.2727 4.6052 0.7872 20 6 -1.1174 5.0712 -0.1340 21 16 -0.4089 4.8831 -1.7328 22 6 1.0390 4.1644 -1.0395 23 1 -0.3633 0.5237 0.8842 24 1 -0.3633 0.5038 -0.8956 25 1 -0.3632 -1.0276 0.0115 26 1 1.8934 -0.5138 -0.8900 27 1 1.8935 -0.5138 0.8900 28 1 3.8025 2.4632 -0.2701 29 1 4.0137 0.7778 0.2620 30 1 3.2260 -0.0192 -1.9501 31 1 3.0147 1.6662 -2.4821 32 1 4.8007 0.0678 -5.2779 33 1 3.8163 1.6738 1.9795 34 1 2.6385 1.9364 3.2882 35 1 2.6646 0.3875 2.4122 36 1 1.9313 3.9938 2.1613 37 1 2.9700 3.7386 0.7386 38 1 -0.4989 4.6199 1.8431 39 1 -2.0878 5.4987 0.0706 40 1 1.8958 3.8241 -1.6020 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187799077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:28 Heat of formation + Delta-G solvation = 23.002186 kcal Electronic energy + Delta-G solvation = -18811.642952 eV Core-core repulsion = 16138.689593 eV Total energy + Delta-G solvation = -2672.953359 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.99714 -37.16835 -33.32550 -32.32027 -30.67767 -29.59121 -27.64704 -26.70247 -24.29725 -23.16936 -21.99748 -21.14510 -18.73362 -18.22503 -17.20283 -16.38246 -15.57476 -15.05950 -14.57762 -14.38465 -14.02989 -13.59080 -13.20002 -12.91933 -12.61045 -12.42222 -12.31759 -12.18510 -11.81480 -11.51813 -11.41898 -11.23637 -11.17360 -11.07136 -10.89881 -10.69502 -10.49715 -10.36404 -10.03314 -9.71729 -9.31444 -9.06646 -8.42205 -8.31811 -8.03283 -7.54527 -5.98901 -4.01041 1.39063 2.01003 2.35477 3.05500 3.31033 3.38817 3.42321 4.39580 4.56270 5.10766 5.19568 5.33875 5.36806 5.45868 5.57523 5.60557 5.70161 5.74184 5.82268 5.86897 5.95204 6.01972 6.10410 6.14175 6.27476 6.33213 6.37958 6.41978 6.52442 6.61509 6.69444 6.80845 6.89609 7.05426 7.59561 7.68149 7.86067 7.94976 8.11970 8.45635 9.06851 9.62806 11.12291 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.005687 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.773159 B = 4922.524985 C = 5588.438965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 N -0.524 5.524 4 C 0.059 3.941 5 C 0.029 3.971 6 C -0.520 4.520 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.889 3.111 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.083 3.917 15 H 0.075 0.925 16 C -0.185 4.185 17 C -0.051 4.051 18 C -0.099 4.099 19 C -0.125 4.125 20 C -0.229 4.229 21 S 0.070 5.930 22 C -0.162 4.162 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.025 0.975 28 H 0.060 0.940 29 H 0.021 0.979 30 H 0.016 0.984 31 H 0.022 0.978 32 H 0.259 0.741 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.131 0.869 39 H 0.155 0.845 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 6.317 11.374 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 N -0.248 5.248 4 C -0.067 4.067 5 C -0.008 4.008 6 C -0.559 4.559 7 H 0.071 0.929 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.717 3.283 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.026 4.026 15 H 0.093 0.907 16 C -0.244 4.244 17 C -0.091 4.091 18 C -0.110 4.110 19 C -0.157 4.157 20 C -0.365 4.365 21 S 0.333 5.667 22 C -0.297 4.297 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.149 0.851 39 H 0.173 0.827 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.776 6.874 9.347 15.835 hybrid contribution 1.866 -0.875 1.627 2.626 sum -8.910 5.999 10.973 15.355 Atomic orbital electron populations 1.21741 0.95971 1.00337 1.01839 1.22112 0.95030 0.89908 1.01128 1.62276 1.20220 1.16418 1.25901 1.22356 0.85071 0.99780 0.99534 1.19102 0.96168 0.96621 0.88942 1.21236 0.93135 1.44609 0.96922 0.92868 1.24978 0.97225 0.95382 0.96649 1.69981 1.32942 1.45316 1.04938 0.86590 0.85597 0.77620 0.78509 1.19804 1.21078 1.21021 1.21652 0.98501 0.93414 0.89042 0.90650 1.22467 1.01303 1.01158 0.99498 1.20385 0.97019 0.94197 0.97496 1.18674 0.96550 1.02052 0.93724 1.20042 0.94053 1.01456 1.00129 1.25407 1.04425 1.10775 0.95852 1.84260 1.12509 1.60698 1.09274 1.25582 1.01669 1.04961 0.97495 0.93572 0.92094 0.93266 0.89689 0.95699 0.92120 0.96084 0.96558 0.95970 0.93101 0.91788 0.92873 0.92752 0.91479 0.90567 0.85137 0.82741 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.99 37.16 0.37 -1.68 16 2 C 0.05 0.77 5.47 -3.82 -0.02 0.75 16 3 N -0.52 -9.02 3.78 -226.65 -0.86 -9.88 16 4 C 0.06 1.20 3.71 -3.83 -0.01 1.18 16 5 C 0.03 0.73 4.94 -27.88 -0.14 0.60 16 6 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 7 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 10 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.08 1.19 2.17 -67.72 -0.15 1.04 16 15 H 0.08 1.05 6.33 -51.93 -0.33 0.72 16 16 C -0.19 -2.46 8.40 37.16 0.31 -2.15 16 17 C -0.05 -0.69 4.94 -27.88 -0.14 -0.83 16 18 C -0.10 -1.42 4.90 -106.25 -0.52 -1.94 16 19 C -0.13 -1.58 9.97 -41.21 -0.41 -2.00 16 20 C -0.23 -2.81 11.23 29.04 0.33 -2.49 16 21 S 0.07 0.97 23.34 -107.50 -2.51 -1.54 16 22 C -0.16 -2.56 10.59 29.04 0.31 -2.25 16 23 H 0.05 0.62 6.55 -51.93 -0.34 0.28 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.65 5.93 -51.93 -0.31 1.34 16 27 H 0.02 0.40 6.48 -51.93 -0.34 0.06 16 28 H 0.06 1.21 6.20 -51.93 -0.32 0.89 16 29 H 0.02 0.43 6.83 -51.93 -0.35 0.08 16 30 H 0.02 0.44 6.28 -51.93 -0.33 0.11 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.06 0.92 6.53 -51.93 -0.34 0.58 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.73 6.67 -51.93 -0.35 0.39 16 36 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.08 1.13 6.31 -51.93 -0.33 0.80 16 38 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.17 3.02 8.06 -52.49 -0.42 2.60 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -29.07 327.18 -9.46 -38.53 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.25 Total: 0.36 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -0.48 Total: -22.99 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.12 Total: -35.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.07 -9.46 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187799077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.531 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds