Wall clock time and date at job start Mon Mar 30 2020 00:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46902 * 109.46796 * 2 1 4 4 C 1.46898 * 110.99859 * 196.15320 * 3 2 1 5 5 C 1.52994 * 109.47270 * 66.04430 * 4 3 2 6 6 C 1.50705 * 109.47341 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99419 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99999 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00073 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99681 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47168 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47053 * 119.99528 * 10 8 6 13 13 H 1.48498 * 109.46952 * 239.99675 * 10 8 6 14 14 C 1.46897 * 111.00083 * 72.19839 * 3 2 1 15 15 H 1.09001 * 109.46953 * 313.90238 * 14 3 2 16 16 C 1.53000 * 109.47443 * 73.90572 * 14 3 2 17 17 C 1.52998 * 109.46997 * 193.90504 * 14 3 2 18 18 C 1.50705 * 109.47330 * 65.79362 * 17 14 3 19 19 C 1.38423 * 122.53827 * 92.93928 * 18 17 14 20 20 C 1.33392 * 114.91807 * 179.97438 * 19 18 17 21 21 S 1.75881 * 109.59430 * 359.97438 * 20 19 18 22 22 C 1.33391 * 122.53847 * 272.65342 * 18 17 14 23 23 H 1.08999 * 109.46919 * 300.63676 * 1 2 3 24 24 H 1.08994 * 109.47062 * 60.63928 * 1 2 3 25 25 H 1.08996 * 109.46703 * 180.64148 * 1 2 3 26 26 H 1.08998 * 109.46960 * 240.00298 * 2 1 3 27 27 H 1.08999 * 109.47245 * 119.99564 * 2 1 3 28 28 H 1.09000 * 109.47440 * 186.04670 * 4 3 2 29 29 H 1.09004 * 109.46971 * 306.04096 * 4 3 2 30 30 H 1.09000 * 109.47515 * 300.00138 * 5 4 3 31 31 H 1.09004 * 109.47396 * 59.99926 * 5 4 3 32 32 H 0.97004 * 119.99931 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.46807 * 59.99932 * 16 14 3 34 34 H 1.08993 * 109.47486 * 180.02562 * 16 14 3 35 35 H 1.09002 * 109.46982 * 300.00262 * 16 14 3 36 36 H 1.09005 * 109.46979 * 185.78935 * 17 14 3 37 37 H 1.08995 * 109.47274 * 305.79276 * 17 14 3 38 38 H 1.07994 * 122.54312 * 0.02562 * 19 18 17 39 39 H 1.08001 * 125.19936 * 179.97438 * 20 19 18 40 40 H 1.08001 * 125.20001 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4371 1.4423 -0.3815 5 6 3.5913 1.0017 -1.8385 6 6 5.0455 1.0599 -2.2298 7 1 5.7856 1.3796 -1.5111 8 6 5.4309 0.7060 -3.5054 9 7 4.5295 0.3172 -4.3806 10 14 7.2334 0.7788 -3.9905 11 1 8.0389 1.2451 -2.8334 12 1 7.6908 -0.5734 -4.3998 13 1 7.4031 1.7230 -5.1240 14 6 1.7999 2.0211 1.3057 15 1 0.7854 1.8122 1.6455 16 6 2.8019 1.4648 2.3193 17 6 1.9927 3.5333 1.1753 18 6 0.9161 4.1023 0.2873 19 6 -0.2727 4.6052 0.7872 20 6 -1.1174 5.0712 -0.1340 21 16 -0.4089 4.8831 -1.7328 22 6 1.0390 4.1644 -1.0395 23 1 -0.3633 0.5237 0.8842 24 1 -0.3633 0.5038 -0.8956 25 1 -0.3632 -1.0276 0.0115 26 1 1.8934 -0.5138 -0.8900 27 1 1.8935 -0.5138 0.8900 28 1 3.8025 2.4632 -0.2701 29 1 4.0137 0.7778 0.2620 30 1 3.2260 -0.0192 -1.9501 31 1 3.0147 1.6662 -2.4821 32 1 4.8007 0.0678 -5.2779 33 1 3.8163 1.6738 1.9795 34 1 2.6385 1.9364 3.2882 35 1 2.6646 0.3875 2.4122 36 1 1.9313 3.9938 2.1613 37 1 2.9700 3.7386 0.7386 38 1 -0.4989 4.6199 1.8431 39 1 -2.0878 5.4987 0.0706 40 1 1.8958 3.8241 -1.6020 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187799077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:27 Heat of formation + Delta-G solvation = 7.295518 kcal Electronic energy + Delta-G solvation = -18812.324045 eV Core-core repulsion = 16138.689593 eV Total energy + Delta-G solvation = -2673.634451 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25037 -38.36669 -35.36254 -33.60107 -32.45716 -30.69020 -29.26736 -27.80564 -26.19779 -24.31329 -23.31859 -22.80606 -20.04930 -19.40246 -18.57994 -18.19993 -16.93025 -16.50569 -16.20923 -15.81122 -15.52820 -15.03335 -14.37852 -14.23858 -14.00767 -13.71201 -13.61148 -13.48634 -13.34306 -13.05921 -12.80974 -12.64651 -12.55128 -12.42705 -12.40169 -12.26465 -11.99193 -11.58310 -11.43909 -11.40573 -11.17248 -11.08469 -10.51949 -9.50043 -9.15737 -8.92547 -8.19641 -6.30311 0.31889 0.93656 1.28460 1.38342 1.38796 1.51749 1.99791 2.39573 3.13858 3.15431 3.99382 4.13960 4.18625 4.24612 4.38262 4.51371 4.52650 4.54727 4.66670 4.69933 4.77306 4.79354 4.88158 4.90427 4.98653 5.04116 5.16870 5.19826 5.22763 5.31422 5.35472 5.42922 5.50080 5.73079 5.76165 5.81170 5.84304 6.17787 6.43943 6.51410 6.88140 7.38799 8.92474 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.005687 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.773159 B = 4922.524985 C = 5588.438965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.046 3.954 3 N -0.533 5.533 4 C 0.083 3.917 5 C 0.039 3.961 6 C -0.540 4.540 7 H 0.058 0.942 8 C 0.002 3.998 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.261 1.261 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.085 3.915 15 H 0.091 0.909 16 C -0.180 4.180 17 C -0.050 4.050 18 C -0.090 4.090 19 C -0.132 4.132 20 C -0.211 4.211 21 S 0.051 5.949 22 C -0.200 4.200 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.019 0.981 30 H -0.009 1.009 31 H -0.012 1.012 32 H 0.262 0.738 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.164 0.836 39 H 0.187 0.813 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.555 7.055 13.981 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.082 4.082 3 N -0.257 5.257 4 C -0.044 4.044 5 C 0.002 3.998 6 C -0.578 4.578 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.185 1.185 12 H -0.204 1.204 13 H -0.205 1.205 14 C -0.023 4.023 15 H 0.109 0.891 16 C -0.239 4.239 17 C -0.090 4.090 18 C -0.102 4.102 19 C -0.162 4.162 20 C -0.346 4.346 21 S 0.314 5.686 22 C -0.335 4.335 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.009 0.991 31 H 0.006 0.994 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.181 0.819 39 H 0.204 0.796 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.343 7.617 11.971 18.165 hybrid contribution 1.967 -1.093 0.831 2.399 sum -9.375 6.524 12.802 17.156 Atomic orbital electron populations 1.21647 0.93811 1.01580 1.01739 1.22086 0.96735 0.89472 0.99913 1.62193 1.17869 1.16984 1.28612 1.21899 0.87324 0.99283 0.95940 1.18911 0.94611 0.94350 0.91924 1.21658 0.94318 1.44431 0.97399 0.92402 1.25920 1.02181 0.94816 0.96626 1.70123 1.35416 1.46258 1.05408 0.85449 0.79660 0.77841 0.78403 1.18532 1.20395 1.20492 1.21746 0.99635 0.93497 0.87447 0.89143 1.22405 0.99827 1.01170 1.00461 1.20436 0.95835 0.93893 0.98864 1.18922 0.97377 1.00900 0.93019 1.20286 0.93013 1.01139 1.01780 1.25803 1.05316 1.09448 0.94071 1.84274 1.12156 1.60893 1.11316 1.25374 1.01916 1.07783 0.98445 0.91682 0.93941 0.91472 0.93378 0.94386 0.92085 0.96280 0.99122 0.99384 0.92901 0.93377 0.89886 0.93025 0.88185 0.92466 0.81895 0.79559 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.99 71.99 0.72 -2.93 16 2 C 0.05 1.55 5.47 86.31 0.47 2.02 16 3 N -0.53 -18.58 3.78 -870.98 -3.30 -21.88 16 4 C 0.08 3.48 3.71 86.30 0.32 3.80 16 5 C 0.04 2.13 4.94 29.85 0.15 2.27 16 6 C -0.54 -31.14 9.11 25.60 0.23 -30.90 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 8 C 0.00 0.14 5.46 84.65 0.46 0.60 16 9 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 10 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 11 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 C 0.09 2.27 2.17 44.92 0.10 2.36 16 15 H 0.09 2.19 6.33 -2.39 -0.02 2.18 16 16 C -0.18 -4.32 8.40 71.98 0.60 -3.72 16 17 C -0.05 -1.27 4.94 29.85 0.15 -1.12 16 18 C -0.09 -2.48 4.90 -20.92 -0.10 -2.58 16 19 C -0.13 -2.90 9.97 21.22 0.21 -2.68 16 20 C -0.21 -4.58 11.23 66.72 0.75 -3.83 16 21 S 0.05 1.41 23.34 -56.49 -1.32 0.09 16 22 C -0.20 -6.56 10.59 66.72 0.71 -5.85 16 23 H 0.06 1.57 6.55 -2.39 -0.02 1.56 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.98 5.93 -2.39 -0.01 1.96 16 27 H 0.04 1.18 6.48 -2.39 -0.02 1.17 16 28 H 0.06 2.54 6.20 -2.39 -0.01 2.52 16 29 H 0.02 0.80 6.83 -2.38 -0.02 0.78 16 30 H -0.01 -0.55 6.28 -2.39 -0.01 -0.57 16 31 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.05 1.31 6.53 -2.39 -0.02 1.30 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.27 6.67 -2.39 -0.02 1.25 16 36 H 0.10 1.90 8.12 -2.38 -0.02 1.88 16 37 H 0.06 1.68 6.31 -2.39 -0.02 1.66 16 38 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 39 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.13 5.31 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -65.66 327.18 3.47 -62.18 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.01 Total: 12.74 kcal Atomic # 6 Polarization: -47.33 SS G_CDS: 4.77 Total: -42.56 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -3.01 Total: -79.43 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.09 kcal Total: -65.66 3.47 -62.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187799077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.480 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds