Wall clock time and date at job start Mon Mar 30 2020 00:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46904 * 109.47034 * 2 1 4 4 C 1.46897 * 111.00034 * 294.18365 * 3 2 1 5 5 C 1.53006 * 109.46795 * 297.47097 * 4 3 2 6 6 C 1.50701 * 109.46967 * 184.03941 * 5 4 3 7 7 H 1.08003 * 119.99965 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99813 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00013 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99794 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47473 * 60.00133 * 10 8 6 12 12 H 1.48503 * 109.47001 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46982 * 300.00133 * 10 8 6 14 14 C 1.46905 * 110.99856 * 58.13357 * 3 2 1 15 15 H 1.08996 * 109.47182 * 297.22553 * 14 3 2 16 16 C 1.53001 * 109.47271 * 177.22610 * 14 3 2 17 17 C 1.53005 * 109.46929 * 57.22549 * 14 3 2 18 18 C 1.50705 * 109.46666 * 186.32609 * 17 14 3 19 19 C 1.38421 * 122.53891 * 91.67144 * 18 17 14 20 20 C 1.33384 * 114.92309 * 179.97438 * 19 18 17 21 21 S 1.75882 * 109.59498 * 359.97438 * 20 19 18 22 22 C 1.33388 * 122.53746 * 271.36868 * 18 17 14 23 23 H 1.08998 * 109.47224 * 302.84727 * 1 2 3 24 24 H 1.08997 * 109.47300 * 62.84985 * 1 2 3 25 25 H 1.09007 * 109.46887 * 182.85118 * 1 2 3 26 26 H 1.08996 * 109.47898 * 240.00087 * 2 1 3 27 27 H 1.08999 * 109.47410 * 119.99828 * 2 1 3 28 28 H 1.08996 * 109.47410 * 57.46613 * 4 3 2 29 29 H 1.09000 * 109.46920 * 177.47255 * 4 3 2 30 30 H 1.09007 * 109.46698 * 304.03637 * 5 4 3 31 31 H 1.08996 * 109.46952 * 64.03821 * 5 4 3 32 32 H 0.96994 * 119.99552 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.46940 * 60.00032 * 16 14 3 34 34 H 1.09005 * 109.47163 * 300.00199 * 16 14 3 35 35 H 1.09000 * 109.47322 * 180.02562 * 16 14 3 36 36 H 1.08986 * 109.47403 * 306.32963 * 17 14 3 37 37 H 1.09000 * 109.46984 * 66.33157 * 17 14 3 38 38 H 1.08001 * 122.53668 * 359.94732 * 19 18 17 39 39 H 1.07998 * 125.20196 * 179.97438 * 20 19 18 40 40 H 1.07999 * 125.20697 * 0.03818 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6654 2.0686 -1.2510 5 6 2.3441 1.3636 -2.4272 6 6 2.0618 2.1223 -3.6983 7 1 1.4590 3.0181 -3.6700 8 6 2.5740 1.6735 -4.8972 9 7 3.3084 0.5831 -4.9316 10 14 2.2247 2.6144 -6.4727 11 1 2.7538 3.9966 -6.3515 12 1 2.8833 1.9301 -7.6143 13 1 0.7587 2.6641 -6.7049 14 6 1.5124 2.1227 1.1648 15 1 0.4252 2.1797 1.1135 16 6 2.0976 3.5364 1.1675 17 6 1.9253 1.3973 2.4471 18 6 1.2766 2.0645 3.6326 19 6 0.0507 1.6628 4.1344 20 6 -0.3810 2.3585 5.1874 21 16 0.7975 3.5975 5.5990 22 6 1.8431 3.0830 4.2814 23 1 -0.3633 0.5574 0.8633 24 1 -0.3634 0.4689 -0.9144 25 1 -0.3633 -1.0265 0.0511 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5842 2.0418 -1.3863 29 1 2.0004 3.1049 -1.2062 30 1 3.4202 1.3272 -2.2571 31 1 1.9557 0.3490 -2.5158 32 1 3.6683 0.2673 -5.7750 33 1 1.8034 4.0531 0.2539 34 1 3.1849 3.4795 1.2188 35 1 1.7216 4.0836 2.0320 36 1 1.6047 0.3569 2.3953 37 1 3.0091 1.4386 2.5551 38 1 -0.5138 0.8480 3.7054 39 1 -1.3117 2.1872 5.7077 40 1 2.7969 3.5253 4.0344 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187799099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:31 Heat of formation + Delta-G solvation = 26.340380 kcal Electronic energy + Delta-G solvation = -18383.074398 eV Core-core repulsion = 15710.265794 eV Total energy + Delta-G solvation = -2672.808604 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.25544 -37.51643 -33.43231 -32.40559 -30.59862 -29.56006 -27.54689 -27.21202 -24.43956 -22.98540 -22.79798 -20.66769 -18.80231 -18.58182 -17.53328 -16.49619 -15.87141 -15.20536 -14.88713 -14.47849 -13.95441 -13.83592 -13.08059 -13.06381 -12.82705 -12.47152 -12.36500 -12.18606 -11.95191 -11.90018 -11.75185 -11.30235 -11.12873 -10.97221 -10.89029 -10.73570 -10.63952 -10.49613 -10.03650 -9.67416 -9.30937 -9.07215 -8.85871 -8.41555 -8.29630 -7.58760 -5.96898 -3.98895 0.92502 1.57777 1.89483 2.63685 3.34853 3.39215 3.41604 4.39513 4.55718 4.82102 5.05455 5.17208 5.25388 5.37796 5.39162 5.48533 5.53953 5.65895 5.68502 5.79860 5.84970 5.95097 5.99939 6.06675 6.18337 6.28200 6.32312 6.37808 6.42552 6.46593 6.57256 6.66705 6.75286 7.06900 7.59079 7.66109 7.85799 7.95679 8.13017 8.47553 9.08313 9.64441 11.14464 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038467 B = 0.003641 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.730500 B = 7688.681255 C = 8001.934807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 N -0.531 5.531 4 C 0.058 3.942 5 C 0.028 3.972 6 C -0.521 4.521 7 H 0.052 0.948 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.085 3.915 15 H 0.039 0.961 16 C -0.148 4.148 17 C -0.058 4.058 18 C -0.090 4.090 19 C -0.127 4.127 20 C -0.214 4.214 21 S 0.073 5.927 22 C -0.206 4.206 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.024 0.976 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 2.453 20.203 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.083 4.083 3 N -0.255 5.255 4 C -0.069 4.069 5 C -0.009 4.009 6 C -0.560 4.560 7 H 0.071 0.929 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.024 4.024 15 H 0.057 0.943 16 C -0.206 4.206 17 C -0.098 4.098 18 C -0.103 4.103 19 C -0.158 4.158 20 C -0.349 4.349 21 S 0.336 5.664 22 C -0.341 4.341 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.905 3.473 21.243 22.077 hybrid contribution -1.247 -0.579 -2.066 2.482 sum -6.152 2.894 19.177 20.346 Atomic orbital electron populations 1.22405 0.99097 1.01476 1.01956 1.22213 0.92342 0.91116 1.02636 1.62373 1.58867 1.01830 1.02421 1.22405 0.97424 0.98348 0.88701 1.19096 0.96420 0.95339 0.90031 1.21166 1.32002 1.10455 0.92369 0.92946 1.24980 0.95190 0.95089 0.99004 1.69958 1.34575 1.22477 1.26275 0.86681 0.78404 0.80089 0.82949 1.20243 1.21301 1.20343 1.21489 0.96934 0.93876 0.90066 0.94339 1.21954 1.01612 0.95514 1.01488 1.20488 1.00549 0.98752 0.90027 1.19008 0.95230 0.97284 0.98764 1.20158 0.96573 1.01964 0.97069 1.25538 1.04248 1.01626 1.03532 1.84208 1.13463 1.35632 1.33048 1.25500 1.04829 1.03073 1.00704 0.93127 0.91993 0.92848 0.89547 0.91634 0.96161 0.91705 0.95754 0.96564 0.92992 0.92165 0.92004 0.92739 0.90580 0.90277 0.84409 0.82137 0.81832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.86 9.23 37.15 0.34 -2.51 16 2 C 0.04 0.74 5.37 -3.82 -0.02 0.72 16 3 N -0.53 -9.43 4.61 -226.65 -1.04 -10.47 16 4 C 0.06 1.22 4.44 -3.82 -0.02 1.20 16 5 C 0.03 0.74 4.71 -27.88 -0.13 0.61 16 6 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 7 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 14 C 0.09 1.25 1.60 -67.71 -0.11 1.14 16 15 H 0.04 0.59 6.36 -51.93 -0.33 0.26 16 16 C -0.15 -2.10 8.60 37.16 0.32 -1.78 16 17 C -0.06 -0.72 4.81 -27.88 -0.13 -0.86 16 18 C -0.09 -1.03 4.69 -106.25 -0.50 -1.53 16 19 C -0.13 -1.35 9.97 -41.21 -0.41 -1.76 16 20 C -0.21 -2.05 11.23 29.04 0.33 -1.72 16 21 S 0.07 0.70 23.34 -107.50 -2.51 -1.81 16 22 C -0.21 -2.19 9.29 29.04 0.27 -1.92 16 23 H 0.05 0.69 6.28 -51.93 -0.33 0.37 16 24 H 0.06 1.06 6.63 -51.93 -0.34 0.71 16 25 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.09 1.64 6.18 -51.93 -0.32 1.32 16 27 H 0.07 0.94 6.22 -51.93 -0.32 0.62 16 28 H 0.02 0.43 6.41 -51.93 -0.33 0.10 16 29 H 0.06 1.37 5.94 -51.93 -0.31 1.06 16 30 H 0.02 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.02 0.44 6.54 -51.93 -0.34 0.10 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.06 0.93 6.25 -51.93 -0.32 0.60 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.68 6.30 -51.93 -0.33 0.35 16 36 H 0.08 0.93 6.04 -51.94 -0.31 0.61 16 37 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 38 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -29.74 322.52 -9.54 -39.28 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.09 Total: -0.43 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -0.47 Total: -21.96 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.31 Total: -36.69 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.74 -9.54 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187799099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.623 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds