Wall clock time and date at job start Mon Mar 30 2020 00:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46904 * 109.47034 * 2 1 4 4 C 1.46897 * 111.00034 * 294.18365 * 3 2 1 5 5 C 1.53006 * 109.46795 * 297.47097 * 4 3 2 6 6 C 1.50701 * 109.46967 * 184.03941 * 5 4 3 7 7 H 1.08003 * 119.99965 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99813 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00013 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99794 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47473 * 60.00133 * 10 8 6 12 12 H 1.48503 * 109.47001 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46982 * 300.00133 * 10 8 6 14 14 C 1.46905 * 110.99856 * 58.13357 * 3 2 1 15 15 H 1.08996 * 109.47182 * 297.22553 * 14 3 2 16 16 C 1.53001 * 109.47271 * 177.22610 * 14 3 2 17 17 C 1.53005 * 109.46929 * 57.22549 * 14 3 2 18 18 C 1.50705 * 109.46666 * 186.32609 * 17 14 3 19 19 C 1.38421 * 122.53891 * 91.67144 * 18 17 14 20 20 C 1.33384 * 114.92309 * 179.97438 * 19 18 17 21 21 S 1.75882 * 109.59498 * 359.97438 * 20 19 18 22 22 C 1.33388 * 122.53746 * 271.36868 * 18 17 14 23 23 H 1.08998 * 109.47224 * 302.84727 * 1 2 3 24 24 H 1.08997 * 109.47300 * 62.84985 * 1 2 3 25 25 H 1.09007 * 109.46887 * 182.85118 * 1 2 3 26 26 H 1.08996 * 109.47898 * 240.00087 * 2 1 3 27 27 H 1.08999 * 109.47410 * 119.99828 * 2 1 3 28 28 H 1.08996 * 109.47410 * 57.46613 * 4 3 2 29 29 H 1.09000 * 109.46920 * 177.47255 * 4 3 2 30 30 H 1.09007 * 109.46698 * 304.03637 * 5 4 3 31 31 H 1.08996 * 109.46952 * 64.03821 * 5 4 3 32 32 H 0.96994 * 119.99552 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.46940 * 60.00032 * 16 14 3 34 34 H 1.09005 * 109.47163 * 300.00199 * 16 14 3 35 35 H 1.09000 * 109.47322 * 180.02562 * 16 14 3 36 36 H 1.08986 * 109.47403 * 306.32963 * 17 14 3 37 37 H 1.09000 * 109.46984 * 66.33157 * 17 14 3 38 38 H 1.08001 * 122.53668 * 359.94732 * 19 18 17 39 39 H 1.07998 * 125.20196 * 179.97438 * 20 19 18 40 40 H 1.07999 * 125.20697 * 0.03818 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6654 2.0686 -1.2510 5 6 2.3441 1.3636 -2.4272 6 6 2.0618 2.1223 -3.6983 7 1 1.4590 3.0181 -3.6700 8 6 2.5740 1.6735 -4.8972 9 7 3.3084 0.5831 -4.9316 10 14 2.2247 2.6144 -6.4727 11 1 2.7538 3.9966 -6.3515 12 1 2.8833 1.9301 -7.6143 13 1 0.7587 2.6641 -6.7049 14 6 1.5124 2.1227 1.1648 15 1 0.4252 2.1797 1.1135 16 6 2.0976 3.5364 1.1675 17 6 1.9253 1.3973 2.4471 18 6 1.2766 2.0645 3.6326 19 6 0.0507 1.6628 4.1344 20 6 -0.3810 2.3585 5.1874 21 16 0.7975 3.5975 5.5990 22 6 1.8431 3.0830 4.2814 23 1 -0.3633 0.5574 0.8633 24 1 -0.3634 0.4689 -0.9144 25 1 -0.3633 -1.0265 0.0511 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5842 2.0418 -1.3863 29 1 2.0004 3.1049 -1.2062 30 1 3.4202 1.3272 -2.2571 31 1 1.9557 0.3490 -2.5158 32 1 3.6683 0.2673 -5.7750 33 1 1.8034 4.0531 0.2539 34 1 3.1849 3.4795 1.2188 35 1 1.7216 4.0836 2.0320 36 1 1.6047 0.3569 2.3953 37 1 3.0091 1.4386 2.5551 38 1 -0.5138 0.8480 3.7054 39 1 -1.3117 2.1872 5.7077 40 1 2.7969 3.5253 4.0344 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187799099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:30 Heat of formation + Delta-G solvation = 9.629086 kcal Electronic energy + Delta-G solvation = -18383.799054 eV Core-core repulsion = 15710.265794 eV Total energy + Delta-G solvation = -2673.533260 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39026 -38.61567 -35.37749 -33.77563 -32.24728 -30.69578 -28.98563 -28.29293 -26.25272 -24.26425 -23.92898 -22.22005 -20.08642 -19.53754 -18.59968 -18.31393 -17.16722 -16.58385 -16.25876 -16.17941 -15.29853 -15.12525 -14.28056 -14.08296 -13.94968 -13.84337 -13.81190 -13.54489 -13.26628 -13.07156 -12.90343 -12.80750 -12.75932 -12.51970 -12.35645 -12.13459 -12.05507 -11.64163 -11.50650 -11.31267 -11.16594 -11.13107 -10.50093 -9.63395 -9.20867 -9.02928 -8.18385 -6.29279 0.15448 0.83241 1.13284 1.39976 1.43108 1.50947 1.81926 2.41172 3.13748 3.14789 3.95305 4.07714 4.13245 4.20191 4.27488 4.42793 4.47906 4.55515 4.59406 4.62182 4.64736 4.71908 4.84350 4.90254 4.97939 5.04203 5.08331 5.18324 5.20314 5.23057 5.34239 5.40926 5.50979 5.59467 5.66822 5.72189 5.84158 6.17265 6.39346 6.43967 6.87990 7.39417 8.93440 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038467 B = 0.003641 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.730500 B = 7688.681255 C = 8001.934807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.045 3.955 3 N -0.541 5.541 4 C 0.076 3.924 5 C 0.039 3.961 6 C -0.545 4.545 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.088 3.912 15 H 0.037 0.963 16 C -0.144 4.144 17 C -0.048 4.048 18 C -0.101 4.101 19 C -0.143 4.143 20 C -0.212 4.212 21 S 0.091 5.909 22 C -0.216 4.216 23 H 0.067 0.933 24 H 0.035 0.965 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.092 0.908 28 H 0.019 0.981 29 H 0.064 0.936 30 H -0.009 1.009 31 H -0.006 1.006 32 H 0.263 0.737 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.147 0.853 39 H 0.183 0.817 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 3.318 21.446 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.083 4.083 3 N -0.265 5.265 4 C -0.051 4.051 5 C 0.001 3.999 6 C -0.583 4.583 7 H 0.075 0.925 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.192 1.192 14 C -0.020 4.020 15 H 0.055 0.945 16 C -0.202 4.202 17 C -0.088 4.088 18 C -0.114 4.114 19 C -0.174 4.174 20 C -0.347 4.347 21 S 0.355 5.645 22 C -0.351 4.351 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.009 0.991 31 H 0.013 0.987 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.164 0.836 39 H 0.201 0.799 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.063 4.343 22.510 23.713 hybrid contribution -0.874 -0.862 -2.358 2.658 sum -6.937 3.481 20.152 21.595 Atomic orbital electron populations 1.22305 0.97635 1.02728 1.01318 1.22203 0.93565 0.90292 1.02239 1.62289 1.59643 1.02501 1.02069 1.21999 0.96505 0.97812 0.88779 1.18905 0.94533 0.94632 0.91806 1.21608 1.32188 1.10881 0.93635 0.92453 1.25931 0.94760 0.95993 1.02857 1.70099 1.35524 1.24103 1.27352 0.85529 0.78700 0.78815 0.78172 1.19178 1.20771 1.19240 1.21542 0.96733 0.94054 0.89659 0.94478 1.21922 1.01442 0.95287 1.01521 1.20337 1.00478 0.98757 0.89252 1.18953 0.95875 0.97850 0.98738 1.20288 0.96555 1.02768 0.97746 1.25866 1.04888 1.00930 1.03066 1.84182 1.12945 1.35268 1.32129 1.25688 1.05370 1.02961 1.01101 0.91374 0.94589 0.90948 0.92922 0.88989 0.96332 0.91805 0.99072 0.98739 0.92798 0.93727 0.92300 0.90816 0.90165 0.90564 0.83565 0.79931 0.81190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.29 9.23 71.98 0.66 -4.62 16 2 C 0.04 1.48 5.37 86.30 0.46 1.94 16 3 N -0.54 -19.35 4.61 -870.98 -4.01 -23.36 16 4 C 0.08 3.30 4.44 86.31 0.38 3.68 16 5 C 0.04 2.10 4.71 29.85 0.14 2.24 16 6 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 8 C 0.00 0.15 5.46 84.66 0.46 0.61 16 9 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 10 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.09 2.51 1.60 44.92 0.07 2.58 16 15 H 0.04 1.09 6.36 -2.39 -0.02 1.07 16 16 C -0.14 -3.97 8.60 71.98 0.62 -3.35 16 17 C -0.05 -1.12 4.81 29.85 0.14 -0.98 16 18 C -0.10 -2.11 4.69 -20.92 -0.10 -2.21 16 19 C -0.14 -2.70 9.97 21.21 0.21 -2.49 16 20 C -0.21 -3.47 11.23 66.72 0.75 -2.72 16 21 S 0.09 1.53 23.34 -56.49 -1.32 0.21 16 22 C -0.22 -4.16 9.29 66.72 0.62 -3.54 16 23 H 0.07 1.74 6.28 -2.39 -0.01 1.73 16 24 H 0.03 1.22 6.63 -2.39 -0.02 1.21 16 25 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.05 2.09 6.18 -2.39 -0.01 2.08 16 27 H 0.09 2.54 6.22 -2.39 -0.01 2.53 16 28 H 0.02 0.80 6.41 -2.39 -0.02 0.79 16 29 H 0.06 2.75 5.94 -2.39 -0.01 2.73 16 30 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 31 H -0.01 -0.33 6.54 -2.39 -0.02 -0.34 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.04 1.35 6.25 -2.38 -0.01 1.34 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.07 1.72 6.30 -2.39 -0.02 1.71 16 36 H 0.08 1.79 6.04 -2.39 -0.01 1.77 16 37 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 38 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 40 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -64.66 322.52 2.66 -62.00 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.01 Total: 11.77 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 4.66 Total: -40.27 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -3.73 Total: -80.54 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.32 Total: 0.21 kcal Total: -64.66 2.66 -62.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187799099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.628 kcal (2) G-P(sol) polarization free energy of solvation -64.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds