Wall clock time and date at job start Mon Mar 30 2020 01:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48502 * 109.47059 * 240.00275 * 3 2 1 5 5 H 1.48497 * 109.46956 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46973 * 120.00363 * 3 2 1 7 7 C 1.37883 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46725 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47130 * 180.02562 * 10 9 7 12 12 C 1.49512 * 111.38247 * 54.52628 * 11 10 9 13 13 H 1.09000 * 109.56631 * 25.47845 * 12 11 10 14 14 C 1.50692 * 110.21443 * 264.33475 * 12 11 10 15 15 O 1.20825 * 120.00217 * 0.71619 * 14 12 11 16 16 O 1.34229 * 120.00081 * 180.72583 * 14 12 11 17 17 C 1.55000 * 107.06666 * 144.72446 * 12 11 10 18 18 C 1.52945 * 103.96025 * 2.80667 * 17 12 11 19 19 H 1.09001 * 110.32778 * 89.49099 * 18 17 12 20 20 C 1.51761 * 116.00963 * 216.55721 * 18 17 12 21 21 C 1.53604 * 107.23759 * 177.35334 * 20 18 17 22 22 C 1.52572 * 111.54413 * 302.19269 * 21 20 18 23 23 C 1.53755 * 111.39744 * 54.76853 * 22 21 20 24 24 C 1.46653 * 111.00333 * 170.00110 * 11 10 9 25 25 H 1.09004 * 109.88938 * 314.34604 * 24 11 10 26 26 H 0.97000 * 120.00297 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46525 * 60.00724 * 9 7 2 28 28 H 1.08993 * 109.46930 * 300.00373 * 9 7 2 29 29 H 1.09004 * 109.47250 * 60.00108 * 10 9 7 30 30 H 1.09003 * 109.47333 * 299.99837 * 10 9 7 31 31 H 0.96698 * 117.00753 * 179.97438 * 16 14 12 32 32 H 1.09005 * 110.52967 * 244.18982 * 17 12 11 33 33 H 1.08996 * 110.52768 * 121.42505 * 17 12 11 34 34 H 1.09008 * 109.89287 * 296.79377 * 20 18 17 35 35 H 1.08994 * 109.89843 * 57.83914 * 20 18 17 36 36 H 1.08994 * 108.99251 * 181.68653 * 21 20 18 37 37 H 1.09002 * 109.08635 * 62.75594 * 21 20 18 38 38 H 1.09002 * 109.08524 * 294.29192 * 22 21 20 39 39 H 1.09002 * 109.08206 * 175.24130 * 22 21 20 40 40 H 1.08997 * 109.89093 * 61.90323 * 23 22 21 41 41 H 1.09000 * 109.88454 * 182.92597 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 0.5390 -5.0022 -1.1353 13 1 0.8752 -4.3527 -1.9435 14 6 -0.8317 -4.5804 -0.6724 15 8 -1.0041 -4.2405 0.4742 16 8 -1.8611 -4.5825 -1.5338 17 6 0.5054 -6.4747 -1.6181 18 6 1.4418 -7.2014 -0.6516 19 1 0.8871 -7.5599 0.2155 20 6 2.2845 -8.3124 -1.2504 21 6 3.1876 -8.8523 -0.1313 22 6 4.0605 -7.7517 0.4643 23 6 3.2127 -6.5643 0.9496 24 6 2.4158 -6.0636 -0.2389 25 1 3.0881 -5.8324 -1.0652 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8720 -3.6043 0.8895 30 1 2.8720 -3.6044 -0.8905 31 1 -2.7213 -4.3044 -1.1907 32 1 0.8770 -6.5504 -2.6401 33 1 -0.5050 -6.8773 -1.5468 34 1 1.6390 -9.1080 -1.6228 35 1 2.8943 -7.9185 -2.0634 36 1 3.8285 -9.6341 -0.5387 37 1 2.5646 -9.2778 0.6555 38 1 4.7612 -7.4028 -0.2943 39 1 4.6205 -8.1577 1.3067 40 1 2.5357 -6.8902 1.7393 41 1 3.8626 -5.7724 1.3220 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227219241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:26 Heat of formation + Delta-G solvation = -103.895876 kcal Electronic energy + Delta-G solvation = -21625.550201 eV Core-core repulsion = 18504.341258 eV Total energy + Delta-G solvation = -3121.208943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.53341 -38.97826 -36.06447 -35.21687 -33.49380 -32.32828 -30.37332 -29.01913 -27.89648 -24.39657 -24.06138 -21.61506 -21.25884 -20.97393 -19.91285 -19.07537 -17.29439 -16.53045 -16.28516 -15.28116 -15.04175 -14.64112 -14.50323 -14.40028 -14.30751 -13.61898 -13.37456 -12.95188 -12.64971 -12.25413 -12.09163 -11.85529 -11.79262 -11.39794 -11.22812 -11.03407 -10.90715 -10.78697 -10.65959 -10.63293 -10.54161 -10.38019 -10.03866 -9.86000 -9.62434 -9.27814 -9.06234 -8.31942 -7.93733 -5.95335 -3.98714 2.93669 3.34938 3.37031 3.39456 3.41964 4.24778 4.47040 4.59240 4.70153 4.81645 5.01125 5.11582 5.23889 5.39710 5.41360 5.45556 5.48899 5.51424 5.62220 5.72575 5.83454 5.87073 5.92947 5.98076 6.06310 6.10035 6.18962 6.26123 6.30814 6.34542 6.38714 6.53955 6.90706 7.10182 7.26618 7.49122 7.71137 7.91372 8.16047 8.44254 8.60710 9.08941 9.64469 11.15533 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.005800 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.271534 B = 4826.031027 C = 5799.476326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.054 3.946 11 N -0.488 5.488 12 C 0.080 3.920 13 H 0.092 0.908 14 C 0.483 3.517 15 O -0.474 6.474 16 O -0.529 6.529 17 C -0.111 4.111 18 C -0.096 4.096 19 H 0.084 0.916 20 C -0.106 4.106 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.101 4.101 24 C 0.064 3.936 25 H 0.047 0.953 26 H 0.260 0.740 27 H 0.006 0.994 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.405 0.595 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 -17.590 -3.799 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.073 4.073 11 N -0.213 5.213 12 C -0.029 4.029 13 H 0.110 0.890 14 C 0.322 3.678 15 O -0.358 6.358 16 O -0.341 6.341 17 C -0.149 4.149 18 C -0.115 4.115 19 H 0.102 0.898 20 C -0.144 4.144 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.139 4.139 24 C -0.045 4.045 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.025 0.975 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.263 0.737 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.881 -17.503 -3.080 18.004 hybrid contribution 0.280 1.505 -0.549 1.626 sum 3.161 -15.998 -3.628 16.706 Atomic orbital electron populations 1.69983 1.06017 1.26565 1.50314 1.24995 0.94805 0.99124 0.95291 0.86666 0.79578 0.83223 0.78560 1.20325 1.21281 1.20210 1.21141 0.92867 0.91066 1.51232 0.92847 1.19219 0.93884 0.90174 0.97989 1.22571 0.96982 0.88282 0.99424 1.64372 1.13676 1.03881 1.39342 1.22192 0.88982 0.97496 0.94267 0.89034 1.22958 0.86335 0.74703 0.83792 1.90728 1.83896 1.41237 1.19906 1.84456 1.21330 1.81731 1.46567 1.22199 1.00860 0.92379 0.99460 1.21881 0.95685 0.95121 0.98810 0.89789 1.21391 0.97621 0.97581 0.97805 1.21510 0.98149 0.97767 0.98065 1.21534 0.97957 0.95622 1.00315 1.21278 0.98231 0.97041 0.97343 1.22364 0.93909 0.90845 0.97334 0.93483 0.93014 0.97531 0.94339 0.91150 0.95894 0.73721 0.90307 0.90478 0.91753 0.91725 0.92284 0.92088 0.92276 0.91952 0.91072 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.67 3.75 -27.88 -0.10 0.56 16 10 C 0.05 1.18 4.88 -3.82 -0.02 1.16 16 11 N -0.49 -9.20 4.55 -216.26 -0.98 -10.19 16 12 C 0.08 1.42 2.38 -66.35 -0.16 1.26 16 13 H 0.09 1.69 7.24 -51.93 -0.38 1.31 16 14 C 0.48 9.45 6.14 36.00 0.22 9.67 16 15 O -0.47 -11.19 15.49 -18.75 -0.29 -11.48 16 16 O -0.53 -8.44 13.35 -39.26 -0.52 -8.96 16 17 C -0.11 -1.45 6.21 -25.70 -0.16 -1.61 16 18 C -0.10 -1.19 2.54 -90.03 -0.23 -1.42 16 19 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 20 C -0.11 -1.02 5.61 -27.05 -0.15 -1.18 16 21 C -0.12 -1.06 5.83 -26.64 -0.16 -1.22 16 22 C -0.12 -1.17 5.85 -26.56 -0.16 -1.33 16 23 C -0.10 -1.31 5.90 -27.05 -0.16 -1.47 16 24 C 0.06 0.94 1.62 -67.31 -0.11 0.83 16 25 H 0.05 0.69 7.70 -51.93 -0.40 0.29 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.01 0.18 6.05 -51.93 -0.31 -0.13 16 28 H 0.04 1.18 7.12 -51.93 -0.37 0.81 16 29 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 30 H 0.02 0.48 7.89 -51.93 -0.41 0.07 16 31 H 0.40 4.91 9.10 45.56 0.41 5.32 16 32 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 33 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 34 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.06 0.61 8.03 -51.93 -0.42 0.20 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 320.84 15.07 4.84 4.84 Total: -1.00 -33.98 320.84 -8.86 -42.84 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.03 Total: 1.41 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.59 Total: -8.68 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.25 Total: -37.06 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.81 Total: -20.44 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.98 -8.86 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227219241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.056 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds