Wall clock time and date at job start Mon Mar 30 2020 01:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48502 * 109.47059 * 240.00275 * 3 2 1 5 5 H 1.48497 * 109.46956 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46973 * 120.00363 * 3 2 1 7 7 C 1.37883 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46725 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47130 * 180.02562 * 10 9 7 12 12 C 1.49512 * 111.38247 * 54.52628 * 11 10 9 13 13 H 1.09000 * 109.56631 * 25.47845 * 12 11 10 14 14 C 1.50692 * 110.21443 * 264.33475 * 12 11 10 15 15 O 1.20825 * 120.00217 * 0.71619 * 14 12 11 16 16 O 1.34229 * 120.00081 * 180.72583 * 14 12 11 17 17 C 1.55000 * 107.06666 * 144.72446 * 12 11 10 18 18 C 1.52945 * 103.96025 * 2.80667 * 17 12 11 19 19 H 1.09001 * 110.32778 * 89.49099 * 18 17 12 20 20 C 1.51761 * 116.00963 * 216.55721 * 18 17 12 21 21 C 1.53604 * 107.23759 * 177.35334 * 20 18 17 22 22 C 1.52572 * 111.54413 * 302.19269 * 21 20 18 23 23 C 1.53755 * 111.39744 * 54.76853 * 22 21 20 24 24 C 1.46653 * 111.00333 * 170.00110 * 11 10 9 25 25 H 1.09004 * 109.88938 * 314.34604 * 24 11 10 26 26 H 0.97000 * 120.00297 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.46525 * 60.00724 * 9 7 2 28 28 H 1.08993 * 109.46930 * 300.00373 * 9 7 2 29 29 H 1.09004 * 109.47250 * 60.00108 * 10 9 7 30 30 H 1.09003 * 109.47333 * 299.99837 * 10 9 7 31 31 H 0.96698 * 117.00753 * 179.97438 * 16 14 12 32 32 H 1.09005 * 110.52967 * 244.18982 * 17 12 11 33 33 H 1.08996 * 110.52768 * 121.42505 * 17 12 11 34 34 H 1.09008 * 109.89287 * 296.79377 * 20 18 17 35 35 H 1.08994 * 109.89843 * 57.83914 * 20 18 17 36 36 H 1.08994 * 108.99251 * 181.68653 * 21 20 18 37 37 H 1.09002 * 109.08635 * 62.75594 * 21 20 18 38 38 H 1.09002 * 109.08524 * 294.29192 * 22 21 20 39 39 H 1.09002 * 109.08206 * 175.24130 * 22 21 20 40 40 H 1.08997 * 109.89093 * 61.90323 * 23 22 21 41 41 H 1.09000 * 109.88454 * 182.92597 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 0.5390 -5.0022 -1.1353 13 1 0.8752 -4.3527 -1.9435 14 6 -0.8317 -4.5804 -0.6724 15 8 -1.0041 -4.2405 0.4742 16 8 -1.8611 -4.5825 -1.5338 17 6 0.5054 -6.4747 -1.6181 18 6 1.4418 -7.2014 -0.6516 19 1 0.8871 -7.5599 0.2155 20 6 2.2845 -8.3124 -1.2504 21 6 3.1876 -8.8523 -0.1313 22 6 4.0605 -7.7517 0.4643 23 6 3.2127 -6.5643 0.9496 24 6 2.4158 -6.0636 -0.2389 25 1 3.0881 -5.8324 -1.0652 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8720 -3.6043 0.8895 30 1 2.8720 -3.6044 -0.8905 31 1 -2.7213 -4.3044 -1.1907 32 1 0.8770 -6.5504 -2.6401 33 1 -0.5050 -6.8773 -1.5468 34 1 1.6390 -9.1080 -1.6228 35 1 2.8943 -7.9185 -2.0634 36 1 3.8285 -9.6341 -0.5387 37 1 2.5646 -9.2778 0.6555 38 1 4.7612 -7.4028 -0.2943 39 1 4.6205 -8.1577 1.3067 40 1 2.5357 -6.8902 1.7393 41 1 3.8626 -5.7724 1.3220 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227219241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:26 Heat of formation + Delta-G solvation = -127.445517 kcal Electronic energy + Delta-G solvation = -21626.571390 eV Core-core repulsion = 18504.341258 eV Total energy + Delta-G solvation = -3122.230132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.86196 -40.33450 -37.36903 -36.71641 -35.35360 -33.85844 -31.84273 -30.17219 -29.44784 -26.25633 -25.34226 -23.16605 -22.53984 -22.06742 -20.97187 -20.53902 -18.80793 -18.62938 -17.75277 -16.86198 -16.57623 -16.18615 -15.80863 -15.68031 -15.30007 -15.04263 -14.66876 -14.37540 -14.10552 -13.76628 -13.52306 -13.17919 -12.97694 -12.83138 -12.72942 -12.61737 -12.46495 -12.40064 -12.18921 -11.90307 -11.68530 -11.59380 -11.37731 -11.32409 -11.18933 -11.12618 -10.71081 -10.57922 -9.42290 -8.21962 -6.35204 1.36466 1.38224 1.41244 1.48620 2.01314 2.38042 2.99479 3.10532 3.41632 3.68031 3.80770 4.01875 4.16536 4.24249 4.32523 4.39199 4.41244 4.49017 4.51118 4.59709 4.64693 4.70584 4.84511 4.89138 4.95351 5.03319 5.12055 5.23971 5.32081 5.33209 5.35926 5.40324 5.44324 5.58853 5.60494 5.70177 5.75078 5.90350 6.15285 6.25966 6.82076 7.14862 7.34107 8.89603 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.005800 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.271534 B = 4826.031027 C = 5799.476326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.040 3.960 10 C 0.071 3.929 11 N -0.508 5.508 12 C 0.073 3.927 13 H 0.081 0.919 14 C 0.481 3.519 15 O -0.526 6.526 16 O -0.516 6.516 17 C -0.100 4.100 18 C -0.085 4.085 19 H 0.073 0.927 20 C -0.100 4.100 21 C -0.116 4.116 22 C -0.110 4.110 23 C -0.102 4.102 24 C 0.058 3.942 25 H 0.052 0.948 26 H 0.263 0.737 27 H -0.015 1.015 28 H -0.008 1.008 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.421 0.579 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.540 -19.069 -5.141 20.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.588 4.588 8 H 0.080 0.920 9 C 0.003 3.997 10 C -0.056 4.056 11 N -0.232 5.232 12 C -0.037 4.037 13 H 0.099 0.901 14 C 0.323 3.677 15 O -0.414 6.414 16 O -0.329 6.329 17 C -0.138 4.138 18 C -0.104 4.104 19 H 0.092 0.908 20 C -0.138 4.138 21 C -0.153 4.153 22 C -0.148 4.148 23 C -0.140 4.140 24 C -0.050 4.050 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.004 0.996 28 H 0.010 0.990 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.282 0.718 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.467 -19.012 -4.447 20.030 hybrid contribution -0.307 1.959 -0.128 1.987 sum 4.159 -17.053 -4.575 18.139 Atomic orbital electron populations 1.70146 1.07997 1.27746 1.51142 1.26020 0.95728 1.03499 0.94462 0.85450 0.78225 0.77742 0.79305 1.18737 1.20791 1.19206 1.21616 0.93542 0.92268 1.51332 0.91970 1.18944 0.93926 0.92201 0.94665 1.22177 0.95615 0.88358 0.99483 1.64277 1.14715 1.03587 1.40644 1.22367 0.87481 1.00484 0.93351 0.90110 1.23525 0.87598 0.73303 0.83301 1.90710 1.84854 1.43701 1.22105 1.84417 1.21859 1.81096 1.45542 1.22238 1.01912 0.88803 1.00828 1.21866 0.95049 0.95076 0.98437 0.90814 1.21399 0.97528 0.96846 0.98000 1.21518 0.98203 0.97691 0.97932 1.21505 0.97705 0.94621 1.00973 1.21312 0.98045 0.98000 0.96603 1.22546 0.94171 0.90034 0.98264 0.92989 0.92867 0.99641 0.99003 0.91694 0.95059 0.71837 0.87648 0.89547 0.89723 0.90970 0.90078 0.92048 0.91772 0.90742 0.92113 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.45 13.29 21.45 0.28 -59.16 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 45.68 29.54 68.60 2.03 47.70 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.55 -32.80 9.11 25.60 0.23 -32.57 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.04 2.28 3.75 29.85 0.11 2.39 16 10 C 0.07 3.21 4.88 86.30 0.42 3.63 16 11 N -0.51 -19.59 4.55 -838.11 -3.81 -23.40 16 12 C 0.07 2.60 2.38 44.34 0.11 2.70 16 13 H 0.08 3.04 7.24 -2.39 -0.02 3.02 16 14 C 0.48 19.46 6.14 71.23 0.44 19.90 16 15 O -0.53 -26.28 15.49 21.97 0.34 -25.94 16 16 O -0.52 -16.56 13.35 -51.41 -0.69 -17.25 16 17 C -0.10 -2.42 6.21 31.26 0.19 -2.23 16 18 C -0.09 -1.94 2.54 -10.41 -0.03 -1.96 16 19 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 20 C -0.10 -1.55 5.61 30.39 0.17 -1.38 16 21 C -0.12 -1.69 5.83 30.66 0.18 -1.51 16 22 C -0.11 -1.94 5.85 30.71 0.18 -1.76 16 23 C -0.10 -2.58 5.90 30.39 0.18 -2.40 16 24 C 0.06 1.64 1.62 45.31 0.07 1.72 16 25 H 0.05 1.44 7.70 -2.38 -0.02 1.43 16 26 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 27 H -0.01 -0.88 6.05 -2.39 -0.01 -0.90 16 28 H -0.01 -0.56 7.12 -2.39 -0.02 -0.57 16 29 H 0.06 2.94 8.14 -2.38 -0.02 2.92 16 30 H 0.03 1.34 7.89 -2.39 -0.02 1.32 16 31 H 0.42 10.33 9.10 -74.06 -0.67 9.65 16 32 H 0.11 2.02 8.05 -2.38 -0.02 2.01 16 33 H 0.09 1.96 7.68 -2.39 -0.02 1.94 16 34 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.07 1.06 8.03 -2.39 -0.02 1.04 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.64 8.06 -2.39 -0.02 1.62 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -76.77 320.84 1.21 -75.56 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.34 Total: 15.45 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 2.72 Total: -12.96 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -3.53 Total: -82.56 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -0.35 Total: -43.19 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -76.77 1.21 -75.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227219241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.890 kcal (2) G-P(sol) polarization free energy of solvation -76.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds