Wall clock time and date at job start Mon Mar 30 2020 01:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00371 * 2 1 4 4 H 1.48500 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46923 * 300.00323 * 3 2 1 6 6 H 1.48497 * 109.47029 * 60.00236 * 3 2 1 7 7 C 1.37885 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99900 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46966 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47110 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.47373 * 174.64773 * 11 10 9 13 13 C 1.46965 * 110.99531 * 54.59194 * 12 11 10 14 14 C 1.53807 * 108.16303 * 124.30697 * 13 12 11 15 15 H 1.09000 * 112.05500 * 253.10279 * 14 13 12 16 16 C 1.54004 * 108.65682 * 127.72698 * 14 13 12 17 17 C 1.54206 * 106.79553 * 248.96305 * 16 14 13 18 18 C 1.55737 * 104.60930 * 22.79281 * 17 16 14 19 19 C 1.54582 * 102.29914 * 322.54523 * 18 17 16 20 20 H 1.09000 * 112.57169 * 275.18851 * 19 18 17 21 21 C 1.47104 * 111.00072 * 176.30944 * 12 11 10 22 22 H 1.09003 * 110.00658 * 339.00362 * 21 12 11 23 23 C 1.50707 * 109.96952 * 100.26120 * 21 12 11 24 24 O 1.20818 * 119.99805 * 17.47192 * 23 21 12 25 25 O 1.34229 * 119.99397 * 197.46802 * 23 21 12 26 26 H 0.97004 * 119.99829 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47218 * 59.99914 * 9 7 2 28 28 H 1.09003 * 109.46829 * 300.00331 * 9 7 2 29 29 H 1.08997 * 109.47320 * 59.99857 * 10 9 7 30 30 H 1.08997 * 109.46929 * 300.00077 * 10 9 7 31 31 H 1.09002 * 109.47183 * 54.65222 * 11 10 9 32 32 H 1.09002 * 109.47240 * 294.65078 * 11 10 9 33 33 H 1.08999 * 109.73644 * 4.62277 * 13 12 11 34 34 H 1.08993 * 109.71387 * 243.98434 * 13 12 11 35 35 H 1.09003 * 109.99478 * 8.30065 * 16 14 13 36 36 H 1.09005 * 109.99301 * 129.62867 * 16 14 13 37 37 H 1.09000 * 110.47613 * 141.87301 * 17 16 14 38 38 H 1.08997 * 110.47836 * 264.35999 * 17 16 14 39 39 H 1.09005 * 111.32653 * 204.20122 * 18 17 16 40 40 H 1.08996 * 110.57152 * 80.55009 * 18 17 16 41 41 H 0.96701 * 116.99346 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4294 -6.1007 -0.1291 13 6 3.4636 -6.0346 0.9130 14 6 3.4588 -7.3686 1.6786 15 1 3.0269 -7.2675 2.6743 16 6 4.8935 -7.9278 1.7031 17 6 4.8974 -9.1842 0.8091 18 6 3.6838 -8.9896 -0.1472 19 6 2.6368 -8.3302 0.7794 20 1 2.0670 -9.0608 1.3535 21 6 1.7372 -7.3960 -0.0442 22 1 0.7748 -7.2727 0.4525 23 6 1.5344 -7.9627 -1.4259 24 8 2.1810 -7.5379 -2.3539 25 8 0.6354 -8.9393 -1.6252 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6246 -2.5570 0.8897 29 1 2.8718 -3.6044 0.8894 30 1 2.8717 -3.6044 -0.8905 31 1 0.7833 -5.0047 -0.8379 32 1 0.9275 -5.0872 0.9343 33 1 3.2438 -5.2161 1.5984 34 1 4.4393 -5.8777 0.4532 35 1 5.5890 -7.1871 1.3083 36 1 5.1720 -8.1948 2.7226 37 1 5.8266 -9.2462 0.2427 38 1 4.7588 -10.0816 1.4119 39 1 3.3190 -9.9451 -0.5243 40 1 3.9467 -8.3236 -0.9690 41 1 0.5403 -9.2706 -2.5287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229219527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:44 Heat of formation + Delta-G solvation = -103.531509 kcal Electronic energy + Delta-G solvation = -21039.483253 eV Core-core repulsion = 17918.290110 eV Total energy + Delta-G solvation = -3121.193143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03471 -39.15889 -36.20253 -35.84960 -33.59750 -31.80197 -30.85659 -29.00950 -26.74654 -25.98344 -23.94341 -22.53238 -21.02893 -20.44649 -19.93117 -19.20822 -17.83604 -16.78581 -16.42085 -16.10885 -15.81294 -14.79217 -14.63196 -14.40779 -14.30675 -13.77539 -13.33695 -13.15764 -12.66583 -12.47020 -12.22319 -11.76216 -11.59853 -11.43724 -11.38876 -11.24392 -10.96845 -10.91999 -10.85101 -10.80180 -10.50489 -10.46627 -10.36137 -10.20012 -9.66141 -9.33063 -9.03126 -8.32520 -8.14749 -5.97697 -3.99527 2.33636 2.90873 3.32990 3.40348 3.44983 4.10607 4.13702 4.37785 4.48464 4.54279 4.98847 5.05805 5.10363 5.19853 5.27961 5.35674 5.38393 5.39054 5.45892 5.54885 5.70219 5.74689 5.81913 5.87638 5.93414 5.98581 6.08287 6.23404 6.23776 6.26702 6.55336 6.68477 6.74472 7.05421 7.20935 7.30688 7.70465 7.84805 8.02585 8.04605 8.45823 9.07685 9.64436 11.13874 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025555 B = 0.004248 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.399959 B = 6589.953987 C = 7281.759598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.053 3.947 12 N -0.512 5.512 13 C 0.052 3.948 14 C -0.109 4.109 15 H 0.087 0.913 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.129 4.129 19 C -0.086 4.086 20 H 0.098 0.902 21 C 0.088 3.912 22 H 0.086 0.914 23 C 0.485 3.515 24 O -0.487 6.487 25 O -0.525 6.525 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.014 0.986 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 -21.212 2.957 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.074 4.074 12 N -0.237 5.237 13 C -0.076 4.076 14 C -0.128 4.128 15 H 0.106 0.894 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.167 4.167 19 C -0.105 4.105 20 H 0.116 0.884 21 C -0.022 4.022 22 H 0.104 0.896 23 C 0.324 3.676 24 O -0.372 6.372 25 O -0.337 6.337 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 5.647 -20.749 2.600 21.660 hybrid contribution -0.217 0.743 0.083 0.778 sum 5.429 -20.006 2.684 20.903 Atomic orbital electron populations 1.69977 1.06067 1.26428 1.51141 1.25026 0.94836 0.99256 0.95387 0.86543 0.80160 0.83820 0.77536 1.19716 1.21021 1.21063 1.21279 0.93084 0.90985 1.50190 0.92610 1.19072 0.93995 0.91345 0.97140 1.21733 0.99274 0.92500 1.00994 1.22546 0.94146 0.90875 0.99835 1.62503 1.13423 0.99829 1.47900 1.22944 0.96411 0.96283 0.91914 1.22832 0.95938 0.95111 0.98945 0.89429 1.22236 0.95653 0.97545 0.99786 1.22446 0.98183 0.97736 0.97326 1.22829 0.94953 1.00526 0.98347 1.22713 0.95560 0.96556 0.95682 0.88375 1.21597 0.99474 0.91793 0.89352 0.89576 1.23291 0.75950 0.76412 0.91927 1.90709 1.44959 1.57517 1.44016 1.84530 1.58577 1.52174 1.38389 0.93109 0.96546 0.96783 0.93182 0.92268 0.91175 0.94885 0.91236 0.90042 0.90960 0.91814 0.91586 0.91881 0.91650 0.89552 0.73596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.27 4.80 -26.74 -0.13 -2.39 16 11 C 0.05 0.94 4.75 -3.83 -0.02 0.92 16 12 N -0.51 -8.01 4.42 -226.90 -1.00 -9.01 16 13 C 0.05 0.70 5.70 -3.37 -0.02 0.68 16 14 C -0.11 -1.14 3.94 -88.51 -0.35 -1.49 16 15 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.11 -1.05 6.39 -25.58 -0.16 -1.21 16 17 C -0.12 -1.05 6.83 -24.64 -0.17 -1.22 16 18 C -0.13 -1.36 5.17 -24.44 -0.13 -1.48 16 19 C -0.09 -0.90 3.66 -88.29 -0.32 -1.23 16 20 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 21 C 0.09 1.16 2.84 -68.42 -0.19 0.97 16 22 H 0.09 1.07 7.61 -51.93 -0.40 0.68 16 23 C 0.48 6.66 6.07 36.01 0.22 6.88 16 24 O -0.49 -8.38 16.44 -18.74 -0.31 -8.69 16 25 O -0.52 -5.48 13.42 -39.25 -0.53 -6.01 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 1.01 6.40 -51.93 -0.33 0.68 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.03 0.56 8.01 -51.93 -0.42 0.14 16 33 H 0.07 0.99 5.99 -51.93 -0.31 0.68 16 34 H 0.08 1.13 7.01 -51.93 -0.36 0.76 16 35 H 0.07 0.69 7.03 -51.93 -0.36 0.33 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.15 6.70 -51.93 -0.35 0.80 16 41 H 0.41 2.56 9.10 45.56 0.41 2.97 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -33.10 323.43 -8.96 -42.06 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.89 Total: -0.79 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.82 Total: -12.82 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.27 Total: -35.58 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.84 Total: -14.69 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.10 -8.96 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229219527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.475 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds