Wall clock time and date at job start Mon Mar 30 2020 01:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00371 * 2 1 4 4 H 1.48500 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46923 * 300.00323 * 3 2 1 6 6 H 1.48497 * 109.47029 * 60.00236 * 3 2 1 7 7 C 1.37885 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99900 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46966 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47110 * 179.97438 * 10 9 7 12 12 N 1.46903 * 109.47373 * 174.64773 * 11 10 9 13 13 C 1.46965 * 110.99531 * 54.59194 * 12 11 10 14 14 C 1.53807 * 108.16303 * 124.30697 * 13 12 11 15 15 H 1.09000 * 112.05500 * 253.10279 * 14 13 12 16 16 C 1.54004 * 108.65682 * 127.72698 * 14 13 12 17 17 C 1.54206 * 106.79553 * 248.96305 * 16 14 13 18 18 C 1.55737 * 104.60930 * 22.79281 * 17 16 14 19 19 C 1.54582 * 102.29914 * 322.54523 * 18 17 16 20 20 H 1.09000 * 112.57169 * 275.18851 * 19 18 17 21 21 C 1.47104 * 111.00072 * 176.30944 * 12 11 10 22 22 H 1.09003 * 110.00658 * 339.00362 * 21 12 11 23 23 C 1.50707 * 109.96952 * 100.26120 * 21 12 11 24 24 O 1.20818 * 119.99805 * 17.47192 * 23 21 12 25 25 O 1.34229 * 119.99397 * 197.46802 * 23 21 12 26 26 H 0.97004 * 119.99829 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47218 * 59.99914 * 9 7 2 28 28 H 1.09003 * 109.46829 * 300.00331 * 9 7 2 29 29 H 1.08997 * 109.47320 * 59.99857 * 10 9 7 30 30 H 1.08997 * 109.46929 * 300.00077 * 10 9 7 31 31 H 1.09002 * 109.47183 * 54.65222 * 11 10 9 32 32 H 1.09002 * 109.47240 * 294.65078 * 11 10 9 33 33 H 1.08999 * 109.73644 * 4.62277 * 13 12 11 34 34 H 1.08993 * 109.71387 * 243.98434 * 13 12 11 35 35 H 1.09003 * 109.99478 * 8.30065 * 16 14 13 36 36 H 1.09005 * 109.99301 * 129.62867 * 16 14 13 37 37 H 1.09000 * 110.47613 * 141.87301 * 17 16 14 38 38 H 1.08997 * 110.47836 * 264.35999 * 17 16 14 39 39 H 1.09005 * 111.32653 * 204.20122 * 18 17 16 40 40 H 1.08996 * 110.57152 * 80.55009 * 18 17 16 41 41 H 0.96701 * 116.99346 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4294 -6.1007 -0.1291 13 6 3.4636 -6.0346 0.9130 14 6 3.4588 -7.3686 1.6786 15 1 3.0269 -7.2675 2.6743 16 6 4.8935 -7.9278 1.7031 17 6 4.8974 -9.1842 0.8091 18 6 3.6838 -8.9896 -0.1472 19 6 2.6368 -8.3302 0.7794 20 1 2.0670 -9.0608 1.3535 21 6 1.7372 -7.3960 -0.0442 22 1 0.7748 -7.2727 0.4525 23 6 1.5344 -7.9627 -1.4259 24 8 2.1810 -7.5379 -2.3539 25 8 0.6354 -8.9393 -1.6252 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8902 28 1 0.6246 -2.5570 0.8897 29 1 2.8718 -3.6044 0.8894 30 1 2.8717 -3.6044 -0.8905 31 1 0.7833 -5.0047 -0.8379 32 1 0.9275 -5.0872 0.9343 33 1 3.2438 -5.2161 1.5984 34 1 4.4393 -5.8777 0.4532 35 1 5.5890 -7.1871 1.3083 36 1 5.1720 -8.1948 2.7226 37 1 5.8266 -9.2462 0.2427 38 1 4.7588 -10.0816 1.4119 39 1 3.3190 -9.9451 -0.5243 40 1 3.9467 -8.3236 -0.9690 41 1 0.5403 -9.2706 -2.5287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229219527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:43 Heat of formation + Delta-G solvation = -125.491942 kcal Electronic energy + Delta-G solvation = -21040.435528 eV Core-core repulsion = 17918.290110 eV Total energy + Delta-G solvation = -3122.145419 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.04984 -40.17032 -37.39047 -36.94628 -35.47239 -33.48136 -31.94703 -30.29863 -27.83130 -27.51414 -25.26419 -24.10692 -22.20853 -21.60852 -20.99155 -20.33428 -18.89432 -18.51765 -17.56703 -17.44660 -16.83315 -16.50800 -16.19517 -15.51593 -15.31629 -14.90791 -14.53941 -14.33537 -14.21849 -13.74215 -13.63848 -13.38483 -13.07761 -12.73866 -12.58998 -12.47605 -12.40586 -12.15167 -12.01759 -11.88815 -11.76640 -11.63200 -11.54913 -11.35129 -11.30354 -11.16863 -11.07954 -10.56612 -9.34550 -8.21380 -6.32304 1.27439 1.39042 1.39904 1.53336 1.94468 2.40339 3.02291 3.11941 3.27484 3.47236 3.68556 4.04944 4.09654 4.16791 4.28518 4.33621 4.34727 4.45772 4.55751 4.58544 4.62511 4.66103 4.76787 4.85337 4.96947 5.00993 5.04201 5.14698 5.19431 5.21056 5.27109 5.38319 5.49144 5.51291 5.66278 5.70952 5.83331 5.95086 6.01816 6.24839 6.83995 7.09942 7.36947 8.90909 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025555 B = 0.004248 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.399959 B = 6589.953987 C = 7281.759598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.090 4.090 11 C 0.066 3.934 12 N -0.529 5.529 13 C 0.048 3.952 14 C -0.102 4.102 15 H 0.104 0.896 16 C -0.113 4.113 17 C -0.114 4.114 18 C -0.129 4.129 19 C -0.078 4.078 20 H 0.127 0.873 21 C 0.081 3.919 22 H 0.097 0.903 23 C 0.490 3.510 24 O -0.531 6.531 25 O -0.513 6.513 26 H 0.264 0.736 27 H -0.013 1.013 28 H -0.004 1.004 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 -22.484 4.311 23.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.061 4.061 12 N -0.254 5.254 13 C -0.078 4.078 14 C -0.121 4.121 15 H 0.122 0.878 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.166 4.166 19 C -0.097 4.097 20 H 0.145 0.855 21 C -0.029 4.029 22 H 0.115 0.885 23 C 0.331 3.669 24 O -0.419 6.419 25 O -0.326 6.326 26 H 0.073 0.927 27 H 0.006 0.994 28 H 0.015 0.985 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 6.490 -22.059 3.954 23.331 hybrid contribution -0.538 1.086 -0.386 1.272 sum 5.952 -20.973 3.568 22.091 Atomic orbital electron populations 1.70101 1.07793 1.27735 1.51737 1.25979 0.95780 1.03354 0.94652 0.85388 0.79038 0.78697 0.77867 1.18683 1.20452 1.20028 1.21692 0.93473 0.92352 1.50492 0.92373 1.18958 0.94327 0.92994 0.94796 1.21459 0.98067 0.92599 1.00703 1.22216 0.93879 0.90335 0.99665 1.62358 1.13439 1.00311 1.49283 1.22981 0.95222 0.98132 0.91502 1.22844 0.97083 0.93062 0.99121 0.87756 1.22234 0.94441 0.97403 1.01000 1.22441 0.97341 0.98355 0.96996 1.22767 0.95953 1.00150 0.97774 1.22813 0.95149 0.96430 0.95307 0.85509 1.21765 1.00392 0.91111 0.89679 0.88525 1.23418 0.75475 0.76273 0.91693 1.90698 1.46762 1.59119 1.45291 1.84477 1.57104 1.50947 1.40091 0.92731 0.99446 0.98522 0.92135 0.93738 0.92810 0.93814 0.92164 0.90944 0.91921 0.89803 0.91558 0.89823 0.90668 0.92894 0.71384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.45 0.28 -57.49 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.47 4.97 29.85 0.15 1.61 16 10 C -0.09 -3.94 4.80 30.59 0.15 -3.79 16 11 C 0.07 2.42 4.75 86.30 0.41 2.83 16 12 N -0.53 -16.58 4.42 -871.77 -3.86 -20.43 16 13 C 0.05 1.29 5.70 86.56 0.49 1.78 16 14 C -0.10 -1.90 3.94 -9.43 -0.04 -1.94 16 15 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 16 C -0.11 -1.78 6.39 31.34 0.20 -1.58 16 17 C -0.11 -1.70 6.83 31.95 0.22 -1.48 16 18 C -0.13 -2.48 5.17 32.08 0.17 -2.31 16 19 C -0.08 -1.44 3.66 -9.29 -0.03 -1.48 16 20 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 21 C 0.08 2.02 2.84 44.34 0.13 2.15 16 22 H 0.10 2.23 7.61 -2.39 -0.02 2.21 16 23 C 0.49 13.17 6.07 71.24 0.43 13.60 16 24 O -0.53 -18.55 16.44 21.99 0.36 -18.18 16 25 O -0.51 -9.82 13.42 -51.41 -0.69 -10.51 16 26 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 27 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 28 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.06 2.48 6.40 -2.39 -0.02 2.47 16 30 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.48 8.01 -2.39 -0.02 1.46 16 33 H 0.06 1.69 5.99 -2.39 -0.01 1.68 16 34 H 0.07 2.03 7.01 -2.39 -0.02 2.01 16 35 H 0.06 1.12 7.03 -2.39 -0.02 1.10 16 36 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.05 1.40 6.70 -2.39 -0.02 1.39 16 41 H 0.42 4.65 9.10 -74.06 -0.67 3.98 16 Total: -1.00 -72.77 323.43 1.43 -71.33 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.34 Total: 9.84 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 2.97 Total: -21.74 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -3.57 Total: -77.93 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.33 Total: -28.69 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -72.77 1.43 -71.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229219527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.160 kcal (2) G-P(sol) polarization free energy of solvation -72.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds