Wall clock time and date at job start Mon Mar 30 2020 00:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47145 * 2 1 4 4 N 1.46891 * 109.47068 * 239.99383 * 2 1 3 5 5 C 1.46900 * 111.00127 * 85.00557 * 4 2 1 6 6 C 1.53003 * 109.47099 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.47199 * 299.99555 * 6 5 4 8 8 C 1.53001 * 109.47184 * 60.00098 * 6 5 4 9 9 C 1.53004 * 109.46823 * 179.97438 * 6 5 4 10 10 C 1.50700 * 109.47119 * 180.02562 * 9 6 5 11 11 H 1.08002 * 119.99535 * 359.97438 * 10 9 6 12 12 C 1.37878 * 120.00391 * 180.02562 * 10 9 6 13 13 N 1.31522 * 119.99326 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00225 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47159 * 90.00213 * 14 12 10 16 16 H 1.48501 * 109.47083 * 209.99738 * 14 12 10 17 17 H 1.48497 * 109.47281 * 329.99799 * 14 12 10 18 18 C 1.50707 * 109.46722 * 119.99648 * 2 1 3 19 19 C 1.33388 * 125.19940 * 259.99864 * 18 2 1 20 20 C 1.38433 * 114.91766 * 179.97438 * 19 18 2 21 21 C 1.33389 * 114.92022 * 0.02562 * 20 19 18 22 22 S 1.75879 * 125.20222 * 79.97389 * 18 2 1 23 23 H 1.08997 * 109.47447 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46926 * 300.00631 * 1 2 3 25 25 H 1.09003 * 109.46833 * 59.99944 * 1 2 3 26 26 H 1.00906 * 111.00498 * 208.95903 * 4 2 1 27 27 H 1.09007 * 109.46949 * 299.99603 * 5 4 2 28 28 H 1.08998 * 109.47166 * 59.99600 * 5 4 2 29 29 H 1.08999 * 109.46560 * 60.00504 * 7 6 5 30 30 H 1.08995 * 109.47034 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.47170 * 300.00376 * 7 6 5 32 32 H 1.09002 * 109.47312 * 59.99467 * 8 6 5 33 33 H 1.08995 * 109.47238 * 179.97438 * 8 6 5 34 34 H 1.09002 * 109.46719 * 299.99567 * 8 6 5 35 35 H 1.09002 * 109.47110 * 300.00189 * 9 6 5 36 36 H 1.08998 * 109.47015 * 59.99949 * 9 6 5 37 37 H 0.97000 * 119.99363 * 179.97438 * 13 12 10 38 38 H 1.08000 * 122.54563 * 359.95533 * 19 18 2 39 39 H 1.07998 * 122.53579 * 180.02562 * 20 19 18 40 40 H 1.07995 * 125.20209 * 180.26467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2224 -2.3468 6 6 2.5964 -0.5333 -3.5740 7 6 3.9936 -1.0854 -3.2849 8 6 1.6473 -1.6896 -3.8952 9 6 2.6613 0.4196 -4.7694 10 6 3.1667 -0.3247 -5.9783 11 1 3.4170 -1.3725 -5.9015 12 6 3.3106 0.3321 -7.1820 13 7 3.0062 1.6082 -7.2752 14 14 3.9378 -0.5904 -8.6803 15 1 2.7892 -1.1734 -9.4192 16 1 4.6724 0.3471 -9.5672 17 1 4.8503 -1.6783 -8.2456 18 6 2.0323 -0.7104 1.2306 19 6 2.4670 -0.1116 2.3404 20 6 2.8800 -0.9716 3.3436 21 6 2.7811 -2.2685 3.0481 22 16 2.1343 -2.4556 1.4232 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 2.9173 -1.1207 -1.0286 27 1 1.0872 0.6161 -2.5526 28 1 2.7590 1.0460 -2.1182 29 1 3.9469 -1.7643 -2.4335 30 1 4.3598 -1.6233 -4.1593 31 1 4.6697 -0.2616 -3.0561 32 1 0.6519 -1.2962 -4.1011 33 1 2.0131 -2.2276 -4.7697 34 1 1.6007 -2.3685 -3.0437 35 1 1.6656 0.8127 -4.9751 36 1 3.3371 1.2437 -4.5408 37 1 3.1078 2.0704 -8.1219 38 1 2.4950 0.9626 2.4482 39 1 3.2539 -0.6190 4.2935 40 1 3.0518 -3.0797 3.7076 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229672010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:52 Heat of formation + Delta-G solvation = 12.225963 kcal Electronic energy + Delta-G solvation = -18244.715870 eV Core-core repulsion = 15571.295218 eV Total energy + Delta-G solvation = -2673.420651 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.55504 -37.39626 -35.10018 -32.39554 -30.30466 -28.40090 -26.86525 -26.31977 -25.47225 -24.04556 -22.53067 -21.07332 -19.40193 -18.03347 -17.07068 -16.20731 -15.62737 -15.30908 -14.68295 -14.22599 -14.09098 -13.60071 -13.08309 -12.90975 -12.75803 -12.55085 -12.24709 -12.01650 -11.98215 -11.91334 -11.58004 -11.25682 -10.95162 -10.86650 -10.74887 -10.61658 -10.47923 -10.23949 -10.11096 -9.66678 -9.02644 -8.85362 -8.70658 -8.50649 -8.30246 -8.16100 -5.94948 -3.94900 0.92057 1.58917 2.00834 2.64468 3.34523 3.41032 3.43854 4.33362 4.51422 4.65878 4.95484 5.29715 5.31804 5.40977 5.42689 5.47231 5.68386 5.78373 5.79151 5.93329 5.99023 5.99956 6.18678 6.26580 6.28853 6.32889 6.39098 6.53535 6.68328 6.80766 6.85106 7.21706 7.22672 7.27857 7.38509 7.63516 7.72037 7.86992 8.05485 8.49968 9.10465 9.67862 11.16771 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038730 B = 0.003809 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.772570 B = 7350.014799 C = 7577.134007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.150 3.850 3 H 0.058 0.942 4 N -0.681 5.681 5 C 0.070 3.930 6 C -0.058 4.058 7 C -0.130 4.130 8 C -0.116 4.116 9 C 0.034 3.966 10 C -0.506 4.506 11 H 0.059 0.941 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.888 3.112 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.172 4.172 19 C -0.146 4.146 20 C -0.135 4.135 21 C -0.232 4.232 22 S 0.137 5.863 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.341 0.659 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.033 0.967 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.015 0.985 36 H 0.012 0.988 37 H 0.258 0.742 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -5.193 19.873 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.038 3.962 3 H 0.076 0.924 4 N -0.314 5.314 5 C -0.059 4.059 6 C -0.058 4.058 7 C -0.187 4.187 8 C -0.173 4.173 9 C -0.003 4.003 10 C -0.545 4.545 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.290 4.290 19 C -0.177 4.177 20 C -0.166 4.166 21 C -0.368 4.368 22 S 0.400 5.600 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.161 0.839 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.092 -6.547 18.670 20.025 hybrid contribution 1.522 1.442 0.310 2.120 sum -1.570 -5.106 18.980 19.717 Atomic orbital electron populations 1.21797 0.93395 1.02615 1.01442 1.20042 0.96020 0.94852 0.85248 0.92379 1.60773 1.33723 1.33522 1.03419 1.22181 1.00355 0.93157 0.90173 1.20625 0.94172 0.96703 0.94307 1.21773 0.96912 0.99669 1.00338 1.21598 0.98197 0.97491 1.00022 1.19121 0.96949 0.93545 0.90727 1.21241 1.42773 0.96315 0.94133 0.92287 1.25015 0.95896 0.94828 0.98862 1.69972 1.49312 1.08971 1.25535 0.86663 0.78943 0.79651 0.83164 1.20782 1.21412 1.19940 1.24793 1.06995 0.96875 1.00324 1.20108 1.03272 1.01138 0.93173 1.20106 1.03437 0.92382 1.00652 1.25745 1.09597 1.00586 1.00862 1.84528 1.61643 1.04009 1.09774 0.91893 0.92775 0.91783 0.83887 0.91318 0.95705 0.94832 0.91656 0.94120 0.94168 0.92702 0.93883 0.96680 0.96936 0.93188 0.84610 0.84702 0.82231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.40 37.16 0.35 -1.25 16 2 C 0.15 1.90 3.05 -68.86 -0.21 1.69 16 3 H 0.06 0.75 7.78 -51.93 -0.40 0.34 16 4 N -0.68 -9.94 5.32 -107.95 -0.57 -10.52 16 5 C 0.07 1.20 4.45 -3.82 -0.02 1.18 16 6 C -0.06 -1.15 0.60 -154.51 -0.09 -1.24 16 7 C -0.13 -2.44 7.89 37.15 0.29 -2.14 16 8 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 9 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 10 C -0.51 -13.87 7.65 -34.44 -0.26 -14.13 16 11 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 12 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 14 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.17 -2.04 5.14 -36.00 -0.19 -2.22 16 19 C -0.15 -1.57 10.04 -41.20 -0.41 -1.99 16 20 C -0.13 -1.32 10.18 -41.20 -0.42 -1.74 16 21 C -0.23 -2.25 11.23 29.04 0.33 -1.93 16 22 S 0.14 1.53 22.89 -107.50 -2.46 -0.93 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.79 7.45 -51.93 -0.39 0.41 16 26 H 0.34 5.00 6.19 -39.29 -0.24 4.76 16 27 H 0.07 1.20 7.44 -51.93 -0.39 0.82 16 28 H 0.02 0.43 8.05 -51.93 -0.42 0.02 16 29 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 30 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 34 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 330.87 15.07 4.99 4.99 Total: -1.00 -29.04 330.87 -9.38 -38.41 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.50 Total: 1.10 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -0.54 Total: -23.51 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.16 Total: -36.68 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.46 Total: -0.93 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.04 -9.38 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229672010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.637 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds