Wall clock time and date at job start Mon Mar 30 2020 00:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47145 * 2 1 4 4 N 1.46891 * 109.47068 * 239.99383 * 2 1 3 5 5 C 1.46900 * 111.00127 * 85.00557 * 4 2 1 6 6 C 1.53003 * 109.47099 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.47199 * 299.99555 * 6 5 4 8 8 C 1.53001 * 109.47184 * 60.00098 * 6 5 4 9 9 C 1.53004 * 109.46823 * 179.97438 * 6 5 4 10 10 C 1.50700 * 109.47119 * 180.02562 * 9 6 5 11 11 H 1.08002 * 119.99535 * 359.97438 * 10 9 6 12 12 C 1.37878 * 120.00391 * 180.02562 * 10 9 6 13 13 N 1.31522 * 119.99326 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00225 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47159 * 90.00213 * 14 12 10 16 16 H 1.48501 * 109.47083 * 209.99738 * 14 12 10 17 17 H 1.48497 * 109.47281 * 329.99799 * 14 12 10 18 18 C 1.50707 * 109.46722 * 119.99648 * 2 1 3 19 19 C 1.33388 * 125.19940 * 259.99864 * 18 2 1 20 20 C 1.38433 * 114.91766 * 179.97438 * 19 18 2 21 21 C 1.33389 * 114.92022 * 0.02562 * 20 19 18 22 22 S 1.75879 * 125.20222 * 79.97389 * 18 2 1 23 23 H 1.08997 * 109.47447 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46926 * 300.00631 * 1 2 3 25 25 H 1.09003 * 109.46833 * 59.99944 * 1 2 3 26 26 H 1.00906 * 111.00498 * 208.95903 * 4 2 1 27 27 H 1.09007 * 109.46949 * 299.99603 * 5 4 2 28 28 H 1.08998 * 109.47166 * 59.99600 * 5 4 2 29 29 H 1.08999 * 109.46560 * 60.00504 * 7 6 5 30 30 H 1.08995 * 109.47034 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.47170 * 300.00376 * 7 6 5 32 32 H 1.09002 * 109.47312 * 59.99467 * 8 6 5 33 33 H 1.08995 * 109.47238 * 179.97438 * 8 6 5 34 34 H 1.09002 * 109.46719 * 299.99567 * 8 6 5 35 35 H 1.09002 * 109.47110 * 300.00189 * 9 6 5 36 36 H 1.08998 * 109.47015 * 59.99949 * 9 6 5 37 37 H 0.97000 * 119.99363 * 179.97438 * 13 12 10 38 38 H 1.08000 * 122.54563 * 359.95533 * 19 18 2 39 39 H 1.07998 * 122.53579 * 180.02562 * 20 19 18 40 40 H 1.07995 * 125.20209 * 180.26467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2224 -2.3468 6 6 2.5964 -0.5333 -3.5740 7 6 3.9936 -1.0854 -3.2849 8 6 1.6473 -1.6896 -3.8952 9 6 2.6613 0.4196 -4.7694 10 6 3.1667 -0.3247 -5.9783 11 1 3.4170 -1.3725 -5.9015 12 6 3.3106 0.3321 -7.1820 13 7 3.0062 1.6082 -7.2752 14 14 3.9378 -0.5904 -8.6803 15 1 2.7892 -1.1734 -9.4192 16 1 4.6724 0.3471 -9.5672 17 1 4.8503 -1.6783 -8.2456 18 6 2.0323 -0.7104 1.2306 19 6 2.4670 -0.1116 2.3404 20 6 2.8800 -0.9716 3.3436 21 6 2.7811 -2.2685 3.0481 22 16 2.1343 -2.4556 1.4232 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 2.9173 -1.1207 -1.0286 27 1 1.0872 0.6161 -2.5526 28 1 2.7590 1.0460 -2.1182 29 1 3.9469 -1.7643 -2.4335 30 1 4.3598 -1.6233 -4.1593 31 1 4.6697 -0.2616 -3.0561 32 1 0.6519 -1.2962 -4.1011 33 1 2.0131 -2.2276 -4.7697 34 1 1.6007 -2.3685 -3.0437 35 1 1.6656 0.8127 -4.9751 36 1 3.3371 1.2437 -4.5408 37 1 3.1078 2.0704 -8.1219 38 1 2.4950 0.9626 2.4482 39 1 3.2539 -0.6190 4.2935 40 1 3.0518 -3.0797 3.7076 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229672010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:51 Heat of formation + Delta-G solvation = -3.310575 kcal Electronic energy + Delta-G solvation = -18245.389584 eV Core-core repulsion = 15571.295218 eV Total energy + Delta-G solvation = -2674.094366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.68981 -38.58746 -36.39940 -34.41523 -31.54477 -29.32716 -28.79332 -27.89508 -26.88364 -25.20637 -24.14852 -22.13623 -20.29994 -19.47178 -18.32899 -18.13309 -16.60004 -16.51287 -16.35548 -15.62846 -15.32320 -14.98879 -14.53172 -14.37619 -13.89564 -13.75193 -13.53281 -13.47250 -13.12686 -12.96962 -12.86108 -12.71604 -12.58314 -12.47487 -12.25034 -12.18453 -12.06170 -11.87895 -11.50643 -11.35148 -10.86129 -10.75286 -10.49675 -9.56115 -9.39135 -9.31639 -8.13392 -6.20192 0.11945 0.77761 1.21732 1.41548 1.41901 1.52498 1.87306 2.44376 3.19945 3.20670 3.70450 4.14218 4.17851 4.28057 4.34024 4.38989 4.44898 4.65015 4.72873 4.73295 4.76335 4.89728 4.95185 4.99262 5.08025 5.19526 5.21865 5.24172 5.32836 5.41999 5.52131 5.54435 5.58707 5.59343 5.66320 5.87358 5.93353 6.05762 6.37433 6.44104 6.94825 7.47090 8.98995 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038730 B = 0.003809 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.772570 B = 7350.014799 C = 7577.134007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.151 3.849 3 H 0.057 0.943 4 N -0.676 5.676 5 C 0.083 3.917 6 C -0.054 4.054 7 C -0.122 4.122 8 C -0.106 4.106 9 C 0.041 3.959 10 C -0.514 4.514 11 H 0.066 0.934 12 C -0.004 4.004 13 N -0.938 5.938 14 Si 0.956 3.044 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.263 1.263 18 C -0.192 4.192 19 C -0.143 4.143 20 C -0.143 4.143 21 C -0.224 4.224 22 S 0.113 5.887 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.343 0.657 27 H 0.062 0.938 28 H 0.019 0.981 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.066 0.934 35 H -0.015 1.015 36 H -0.016 1.016 37 H 0.259 0.741 38 H 0.147 0.853 39 H 0.159 0.841 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 -6.611 21.524 22.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.040 3.960 3 H 0.075 0.925 4 N -0.309 5.309 5 C -0.046 4.046 6 C -0.055 4.055 7 C -0.180 4.180 8 C -0.163 4.163 9 C 0.003 3.997 10 C -0.552 4.552 11 H 0.084 0.916 12 C -0.201 4.201 13 N -0.579 5.579 14 Si 0.781 3.219 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.187 1.187 18 C -0.309 4.309 19 C -0.175 4.175 20 C -0.173 4.173 21 C -0.359 4.359 22 S 0.377 5.623 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.163 0.837 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.004 0.996 36 H 0.002 0.998 37 H 0.068 0.932 38 H 0.165 0.835 39 H 0.177 0.823 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.579 -7.982 20.338 22.000 hybrid contribution 1.352 1.904 -0.102 2.338 sum -1.227 -6.078 20.235 21.164 Atomic orbital electron populations 1.21760 0.92920 1.02391 1.01752 1.20016 0.96350 0.94733 0.84865 0.92514 1.60709 1.33738 1.32950 1.03538 1.21876 0.99593 0.92968 0.90166 1.20485 0.95559 0.95994 0.93416 1.21681 0.95668 0.99846 1.00768 1.21494 0.97332 0.97278 1.00230 1.18995 0.94227 0.93670 0.92774 1.21622 1.41990 0.96702 0.94898 0.91642 1.25909 0.96287 0.95643 1.02212 1.70113 1.50779 1.10682 1.26354 0.85583 0.78565 0.78505 0.79245 1.20135 1.21250 1.18694 1.24664 1.08751 0.97162 1.00361 1.20384 1.02077 1.02023 0.92976 1.20384 1.03294 0.92238 1.01383 1.26062 1.08444 1.01421 0.99983 1.84573 1.62384 1.03881 1.11508 0.92331 0.91199 0.92735 0.83721 0.91964 0.96292 0.91779 0.93345 0.94509 0.94967 0.94269 0.91550 0.99645 0.99773 0.93181 0.83507 0.82325 0.79890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.40 71.98 0.68 -2.29 16 2 C 0.15 3.67 3.05 44.17 0.13 3.80 16 3 H 0.06 1.40 7.78 -2.39 -0.02 1.38 16 4 N -0.68 -18.97 5.32 -495.44 -2.64 -21.61 16 5 C 0.08 2.85 4.45 86.30 0.38 3.23 16 6 C -0.05 -2.16 0.60 -52.18 -0.03 -2.19 16 7 C -0.12 -4.50 7.89 71.98 0.57 -3.93 16 8 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 9 C 0.04 2.13 4.04 29.85 0.12 2.25 16 10 C -0.51 -28.58 7.65 25.60 0.20 -28.39 16 11 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 12 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 13 N -0.94 -57.56 13.29 21.45 0.28 -57.28 16 14 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 18 C -0.19 -4.20 5.14 24.59 0.13 -4.08 16 19 C -0.14 -2.75 10.04 21.22 0.21 -2.54 16 20 C -0.14 -2.36 10.18 21.22 0.22 -2.14 16 21 C -0.22 -3.70 11.23 66.72 0.75 -2.95 16 22 S 0.11 2.32 22.89 -56.49 -1.29 1.03 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.33 7.45 -2.39 -0.02 1.31 16 26 H 0.34 9.46 6.19 -89.69 -0.56 8.90 16 27 H 0.06 2.21 7.44 -2.38 -0.02 2.19 16 28 H 0.02 0.67 8.05 -2.39 -0.02 0.65 16 29 H 0.06 1.96 6.57 -2.39 -0.02 1.94 16 30 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 34 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 35 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.18 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -62.69 330.87 3.23 -59.46 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.45 Total: 14.18 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 4.39 Total: -42.46 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.35 Total: -78.89 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.29 Total: 1.03 kcal Total: -62.69 3.23 -59.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229672010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.153 kcal (2) G-P(sol) polarization free energy of solvation -62.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds