Wall clock time and date at job start Mon Mar 30 2020 00:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46996 * 2 1 4 4 C 1.46899 * 111.00068 * 287.94625 * 3 2 1 5 5 C 1.52995 * 109.47529 * 160.32007 * 4 3 2 6 6 C 1.52996 * 109.47358 * 184.96650 * 5 4 3 7 7 C 1.50705 * 109.47078 * 179.97438 * 6 5 4 8 8 H 1.07991 * 119.99910 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99746 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99914 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99619 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47622 * 59.99752 * 11 9 7 13 13 H 1.48497 * 109.47037 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47123 * 299.99406 * 11 9 7 15 15 C 1.46894 * 110.99998 * 163.99256 * 3 2 1 16 16 C 1.53000 * 109.47325 * 293.94902 * 15 3 2 17 17 C 1.50700 * 109.47578 * 180.02562 * 16 15 3 18 18 C 1.33388 * 125.20118 * 90.00258 * 17 16 15 19 19 C 1.38425 * 114.91972 * 179.97438 * 18 17 16 20 20 C 1.33392 * 114.92184 * 0.02562 * 19 18 17 21 21 S 1.75882 * 125.20311 * 269.70039 * 17 16 15 22 22 H 1.08995 * 109.47261 * 59.16508 * 1 2 3 23 23 H 1.09003 * 109.46654 * 179.16328 * 1 2 3 24 24 H 1.08995 * 109.46965 * 299.16100 * 1 2 3 25 25 H 1.09006 * 109.47273 * 240.00328 * 2 1 3 26 26 H 1.09004 * 109.47621 * 119.99908 * 2 1 3 27 27 H 1.08998 * 109.47022 * 280.32147 * 4 3 2 28 28 H 1.09003 * 109.47144 * 40.31890 * 4 3 2 29 29 H 1.08998 * 109.47184 * 304.96727 * 5 4 3 30 30 H 1.08997 * 109.46980 * 64.96374 * 5 4 3 31 31 H 1.09004 * 109.47467 * 300.00161 * 6 5 4 32 32 H 1.09007 * 109.47235 * 60.00069 * 6 5 4 33 33 H 0.97001 * 119.99224 * 179.97438 * 10 9 7 34 34 H 1.09009 * 109.47139 * 173.95551 * 15 3 2 35 35 H 1.08998 * 109.47723 * 53.95325 * 15 3 2 36 36 H 1.09009 * 109.46482 * 60.00247 * 16 15 3 37 37 H 1.09001 * 109.47552 * 300.00874 * 16 15 3 38 38 H 1.07995 * 122.53957 * 359.95877 * 18 17 16 39 39 H 1.07992 * 122.53737 * 180.02562 * 19 18 17 40 40 H 1.07999 * 125.20305 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7967 2.0222 -1.3047 5 6 1.8477 3.5430 -1.1450 6 6 1.4935 4.2078 -2.4767 7 6 1.5430 5.7058 -2.3191 8 1 1.8009 6.1401 -1.3646 9 6 1.2581 6.5217 -3.3935 10 7 0.9436 5.9927 -4.5557 11 14 1.3202 8.3784 -3.1984 12 1 2.6879 8.7878 -2.7897 13 1 0.9764 9.0237 -4.4908 14 1 0.3463 8.7999 -2.1596 15 6 3.4380 1.4420 0.3782 16 6 3.5956 1.0003 1.8345 17 6 5.0506 1.0593 2.2228 18 6 5.6638 2.1211 2.7478 19 6 7.0079 1.9404 3.0250 20 6 7.4863 0.7320 2.7247 21 16 6.1979 -0.2638 2.0599 22 1 -0.3633 0.5267 -0.8823 23 1 -0.3633 -1.0276 -0.0150 24 1 -0.3633 0.5007 0.8974 25 1 1.8934 -0.5138 -0.8900 26 1 1.8935 -0.5138 0.8900 27 1 2.5720 1.7039 -2.0017 28 1 0.8198 1.7298 -1.6897 29 1 1.1325 3.8524 -0.3829 30 1 2.8514 3.8433 -0.8446 31 1 2.2087 3.8984 -3.2389 32 1 0.4896 3.9074 -2.7771 33 1 0.7428 6.5669 -5.3114 34 1 3.8030 2.4630 0.2667 35 1 4.0131 0.7780 -0.2671 36 1 3.2306 -0.0208 1.9460 37 1 3.0205 1.6642 2.4799 38 1 5.1507 3.0514 2.9415 39 1 7.6227 2.7188 3.4521 40 1 8.5073 0.4122 2.8721 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263809122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:20 Heat of formation + Delta-G solvation = 14.012652 kcal Electronic energy + Delta-G solvation = -17658.469676 eV Core-core repulsion = 14985.126501 eV Total energy + Delta-G solvation = -2673.343174 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.51461 -37.56620 -33.91348 -32.87772 -31.67894 -29.86205 -27.75370 -25.94097 -24.03008 -23.10273 -22.28800 -20.50961 -19.81368 -19.31095 -17.24522 -16.24007 -15.68465 -15.50963 -15.04075 -14.51243 -14.38857 -13.83968 -13.72493 -13.26321 -12.97441 -12.56982 -12.39322 -12.14520 -12.03867 -11.85358 -11.57246 -11.44892 -11.36138 -11.03827 -10.89192 -10.72016 -10.57877 -10.41064 -10.38552 -9.54474 -9.28093 -9.03688 -8.72239 -8.59048 -8.30063 -8.04897 -5.95682 -3.97454 0.89121 1.52266 1.88992 2.65730 3.36382 3.40322 3.43179 4.06983 4.50153 4.81296 4.92111 4.99787 5.13299 5.23407 5.35527 5.40091 5.42457 5.48841 5.57623 5.68847 5.71521 5.88750 5.93253 6.00403 6.07628 6.12511 6.14465 6.23902 6.29876 6.40736 6.46283 6.73796 6.84929 7.19502 7.39009 7.43700 7.73205 7.89049 8.05211 8.48850 9.09618 9.66217 11.15822 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.003910 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.161706 B = 7159.339130 C = 8399.706343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 N -0.538 5.538 4 C 0.054 3.946 5 C -0.102 4.102 6 C 0.022 3.978 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.061 3.939 16 C -0.047 4.047 17 C -0.161 4.161 18 C -0.142 4.142 19 C -0.130 4.130 20 C -0.221 4.221 21 S 0.083 5.917 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.084 0.916 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.524 -14.228 14.400 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 N -0.263 5.263 4 C -0.073 4.073 5 C -0.140 4.140 6 C -0.016 4.016 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.068 4.068 16 C -0.087 4.087 17 C -0.279 4.279 18 C -0.172 4.172 19 C -0.160 4.160 20 C -0.356 4.356 21 S 0.346 5.654 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.136 -15.413 14.035 22.377 hybrid contribution 0.746 2.048 -0.129 2.183 sum 8.882 -13.365 13.906 21.234 Atomic orbital electron populations 1.21782 0.94927 1.00848 1.02947 1.22136 0.96310 0.89720 1.00127 1.62099 1.16676 1.16123 1.31361 1.22346 1.00499 0.96958 0.87451 1.21609 1.00465 0.91014 1.00897 1.19073 0.96618 0.94852 0.91041 1.21222 1.46422 0.91665 0.96289 0.92750 1.25023 0.95416 0.98698 0.95346 1.69959 1.47461 1.35156 1.01107 0.86669 0.78508 0.85691 0.77201 1.20288 1.21334 1.20223 1.22105 0.88915 1.02073 0.93707 1.20220 0.88316 1.02638 0.97495 1.24533 1.00038 0.96780 1.06521 1.20207 0.94543 0.99717 1.02720 1.20201 0.95557 0.97415 1.02846 1.25553 1.02853 0.98229 1.08981 1.84249 1.01066 1.16649 1.63451 0.92223 0.92889 0.91972 0.95253 0.91288 0.95306 0.90963 0.92564 0.93726 0.96915 0.96673 0.93026 0.89770 0.95132 0.90926 0.88960 0.84008 0.84370 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.99 37.16 0.37 -1.39 16 2 C 0.05 0.56 5.55 -3.82 -0.02 0.54 16 3 N -0.54 -8.02 4.39 -234.63 -1.03 -9.05 16 4 C 0.05 0.96 4.83 -3.83 -0.02 0.94 16 5 C -0.10 -2.16 5.19 -26.74 -0.14 -2.29 16 6 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 11 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 C 0.06 0.83 4.77 -3.83 -0.02 0.81 16 16 C -0.05 -0.54 5.67 -27.88 -0.16 -0.70 16 17 C -0.16 -1.84 5.76 -36.00 -0.21 -2.04 16 18 C -0.14 -1.58 10.05 -41.21 -0.41 -2.00 16 19 C -0.13 -1.30 10.18 -41.21 -0.42 -1.72 16 20 C -0.22 -2.12 11.23 29.04 0.33 -1.79 16 21 S 0.08 0.86 23.33 -107.50 -2.51 -1.65 16 22 H 0.06 0.79 6.52 -51.93 -0.34 0.45 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.03 0.37 8.05 -51.93 -0.42 -0.05 16 26 H 0.07 0.76 5.94 -51.93 -0.31 0.45 16 27 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 28 H 0.07 1.28 6.24 -51.93 -0.32 0.96 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.04 0.94 6.95 -51.93 -0.36 0.58 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.08 1.28 6.71 -51.92 -0.35 0.93 16 35 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.07 0.77 6.28 -51.92 -0.33 0.44 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -30.42 336.51 -10.61 -41.03 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.61 Total: -2.81 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -1.25 Total: -22.92 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.29 Total: -35.68 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.42 -10.61 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263809122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.042 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds