Wall clock time and date at job start Mon Mar 30 2020 00:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46996 * 2 1 4 4 C 1.46899 * 111.00068 * 287.94625 * 3 2 1 5 5 C 1.52995 * 109.47529 * 160.32007 * 4 3 2 6 6 C 1.52996 * 109.47358 * 184.96650 * 5 4 3 7 7 C 1.50705 * 109.47078 * 179.97438 * 6 5 4 8 8 H 1.07991 * 119.99910 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99746 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99914 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99619 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47622 * 59.99752 * 11 9 7 13 13 H 1.48497 * 109.47037 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47123 * 299.99406 * 11 9 7 15 15 C 1.46894 * 110.99998 * 163.99256 * 3 2 1 16 16 C 1.53000 * 109.47325 * 293.94902 * 15 3 2 17 17 C 1.50700 * 109.47578 * 180.02562 * 16 15 3 18 18 C 1.33388 * 125.20118 * 90.00258 * 17 16 15 19 19 C 1.38425 * 114.91972 * 179.97438 * 18 17 16 20 20 C 1.33392 * 114.92184 * 0.02562 * 19 18 17 21 21 S 1.75882 * 125.20311 * 269.70039 * 17 16 15 22 22 H 1.08995 * 109.47261 * 59.16508 * 1 2 3 23 23 H 1.09003 * 109.46654 * 179.16328 * 1 2 3 24 24 H 1.08995 * 109.46965 * 299.16100 * 1 2 3 25 25 H 1.09006 * 109.47273 * 240.00328 * 2 1 3 26 26 H 1.09004 * 109.47621 * 119.99908 * 2 1 3 27 27 H 1.08998 * 109.47022 * 280.32147 * 4 3 2 28 28 H 1.09003 * 109.47144 * 40.31890 * 4 3 2 29 29 H 1.08998 * 109.47184 * 304.96727 * 5 4 3 30 30 H 1.08997 * 109.46980 * 64.96374 * 5 4 3 31 31 H 1.09004 * 109.47467 * 300.00161 * 6 5 4 32 32 H 1.09007 * 109.47235 * 60.00069 * 6 5 4 33 33 H 0.97001 * 119.99224 * 179.97438 * 10 9 7 34 34 H 1.09009 * 109.47139 * 173.95551 * 15 3 2 35 35 H 1.08998 * 109.47723 * 53.95325 * 15 3 2 36 36 H 1.09009 * 109.46482 * 60.00247 * 16 15 3 37 37 H 1.09001 * 109.47552 * 300.00874 * 16 15 3 38 38 H 1.07995 * 122.53957 * 359.95877 * 18 17 16 39 39 H 1.07992 * 122.53737 * 180.02562 * 19 18 17 40 40 H 1.07999 * 125.20305 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7967 2.0222 -1.3047 5 6 1.8477 3.5430 -1.1450 6 6 1.4935 4.2078 -2.4767 7 6 1.5430 5.7058 -2.3191 8 1 1.8009 6.1401 -1.3646 9 6 1.2581 6.5217 -3.3935 10 7 0.9436 5.9927 -4.5557 11 14 1.3202 8.3784 -3.1984 12 1 2.6879 8.7878 -2.7897 13 1 0.9764 9.0237 -4.4908 14 1 0.3463 8.7999 -2.1596 15 6 3.4380 1.4420 0.3782 16 6 3.5956 1.0003 1.8345 17 6 5.0506 1.0593 2.2228 18 6 5.6638 2.1211 2.7478 19 6 7.0079 1.9404 3.0250 20 6 7.4863 0.7320 2.7247 21 16 6.1979 -0.2638 2.0599 22 1 -0.3633 0.5267 -0.8823 23 1 -0.3633 -1.0276 -0.0150 24 1 -0.3633 0.5007 0.8974 25 1 1.8934 -0.5138 -0.8900 26 1 1.8935 -0.5138 0.8900 27 1 2.5720 1.7039 -2.0017 28 1 0.8198 1.7298 -1.6897 29 1 1.1325 3.8524 -0.3829 30 1 2.8514 3.8433 -0.8446 31 1 2.2087 3.8984 -3.2389 32 1 0.4896 3.9074 -2.7771 33 1 0.7428 6.5669 -5.3114 34 1 3.8030 2.4630 0.2667 35 1 4.0131 0.7780 -0.2671 36 1 3.2306 -0.0208 1.9460 37 1 3.0205 1.6642 2.4799 38 1 5.1507 3.0514 2.9415 39 1 7.6227 2.7188 3.4521 40 1 8.5073 0.4122 2.8721 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263809122.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:19 Heat of formation + Delta-G solvation = -2.230002 kcal Electronic energy + Delta-G solvation = -17659.174010 eV Core-core repulsion = 14985.126501 eV Total energy + Delta-G solvation = -2674.047509 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.58549 -38.52224 -35.84483 -34.04077 -33.38226 -31.07869 -29.06541 -27.45930 -25.14606 -24.61752 -23.28450 -22.11928 -21.22051 -20.11123 -18.50652 -18.01737 -16.82627 -16.58601 -16.42368 -16.06772 -15.64039 -15.34907 -14.83070 -14.33417 -14.16290 -13.91879 -13.63657 -13.41287 -13.20794 -13.16131 -12.84924 -12.70341 -12.65320 -12.54078 -12.34866 -12.26215 -12.04995 -11.72001 -11.51501 -11.35669 -11.28749 -11.04741 -10.53901 -9.55738 -9.38413 -9.26269 -8.19363 -6.30392 0.08909 0.73373 1.10522 1.40056 1.43456 1.51357 1.85733 2.41519 2.91348 3.13616 3.90089 3.95181 4.08916 4.15954 4.27979 4.30064 4.34492 4.44920 4.60462 4.69533 4.71210 4.71582 4.79236 4.83932 4.93115 4.98238 5.08458 5.12617 5.19559 5.25487 5.27317 5.42049 5.43138 5.53229 5.61186 5.74910 5.86719 6.09947 6.21964 6.29085 6.86076 7.38681 8.92469 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.003910 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.161706 B = 7159.339130 C = 8399.706343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.542 5.542 4 C 0.066 3.934 5 C -0.085 4.085 6 C 0.026 3.974 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.000 4.000 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.266 1.266 15 C 0.064 3.936 16 C -0.036 4.036 17 C -0.181 4.181 18 C -0.150 4.150 19 C -0.143 4.143 20 C -0.217 4.217 21 S 0.082 5.918 22 H 0.040 0.960 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.030 0.970 26 H 0.091 0.909 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.044 0.956 31 H -0.012 1.012 32 H -0.008 1.008 33 H 0.264 0.736 34 H 0.065 0.935 35 H 0.029 0.971 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.290 -14.356 15.891 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 N -0.266 5.266 4 C -0.062 4.062 5 C -0.123 4.123 6 C -0.011 4.011 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.198 4.198 10 N -0.574 5.574 11 Si 0.789 3.211 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.191 1.191 15 C -0.065 4.065 16 C -0.075 4.075 17 C -0.298 4.298 18 C -0.180 4.180 19 C -0.173 4.173 20 C -0.352 4.352 21 S 0.345 5.655 22 H 0.060 0.940 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.006 0.994 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.162 0.838 39 H 0.175 0.825 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 8.905 -15.557 15.546 23.728 hybrid contribution 0.541 2.042 -0.592 2.193 sum 9.446 -13.516 14.953 22.260 Atomic orbital electron populations 1.21772 0.94424 1.02109 1.01937 1.22248 0.96706 0.88179 1.01205 1.62040 1.17591 1.17801 1.29188 1.22048 1.00298 0.94765 0.89041 1.21339 1.00039 0.93255 0.97683 1.18970 0.94565 0.94605 0.93005 1.21660 1.46690 0.93077 0.96694 0.92342 1.25984 0.94694 1.04256 0.94854 1.70094 1.48126 1.37220 1.01994 0.85507 0.79084 0.78966 0.77548 1.19206 1.20713 1.19095 1.22074 0.88016 1.00997 0.95382 1.20076 0.88746 1.03141 0.95549 1.24570 1.00188 0.97517 1.07551 1.20437 0.95302 0.99791 1.02507 1.20438 0.95344 0.98263 1.03233 1.25914 1.03684 0.97795 1.07800 1.84216 1.01262 1.16484 1.63537 0.94046 0.90512 0.92125 0.95185 0.89081 0.95880 0.91148 0.92888 0.93741 0.99367 0.98970 0.92764 0.91697 0.95270 0.89718 0.89082 0.83830 0.82504 0.79756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.99 71.98 0.72 -2.53 16 2 C 0.04 1.03 5.55 86.30 0.48 1.51 16 3 N -0.54 -15.81 4.39 -896.22 -3.94 -19.74 16 4 C 0.07 2.37 4.83 86.30 0.42 2.79 16 5 C -0.09 -3.68 5.19 30.59 0.16 -3.52 16 6 C 0.03 1.43 4.97 29.85 0.15 1.58 16 7 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.29 7.74 -2.92 -0.02 3.27 16 9 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 10 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 11 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 C 0.06 1.72 4.77 86.30 0.41 2.13 16 16 C -0.04 -0.77 5.67 29.85 0.17 -0.60 16 17 C -0.18 -3.92 5.76 24.59 0.14 -3.78 16 18 C -0.15 -3.19 10.05 21.22 0.21 -2.97 16 19 C -0.14 -2.62 10.18 21.22 0.22 -2.40 16 20 C -0.22 -3.71 11.23 66.72 0.75 -2.96 16 21 S 0.08 1.58 23.33 -56.49 -1.32 0.26 16 22 H 0.04 1.07 6.52 -2.39 -0.02 1.06 16 23 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.03 0.72 8.05 -2.38 -0.02 0.70 16 26 H 0.09 1.77 5.94 -2.39 -0.01 1.75 16 27 H 0.02 0.85 8.00 -2.39 -0.02 0.83 16 28 H 0.07 2.55 6.24 -2.39 -0.01 2.53 16 29 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.04 1.90 6.95 -2.39 -0.02 1.88 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.06 1.99 6.71 -2.38 -0.02 1.97 16 35 H 0.03 0.79 8.12 -2.39 -0.02 0.77 16 36 H 0.08 1.61 6.28 -2.38 -0.01 1.60 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 40 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -65.32 336.51 2.57 -62.75 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.99 Total: 9.25 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 4.52 Total: -41.93 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -3.65 Total: -77.37 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.32 Total: 0.26 kcal Total: -65.32 2.57 -62.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263809122.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.522 kcal (2) G-P(sol) polarization free energy of solvation -65.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds