Wall clock time and date at job start Mon Mar 30 2020 00:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46806 * 2 1 4 4 C 1.52998 * 109.46796 * 119.99458 * 2 1 3 5 5 C 1.53001 * 109.47044 * 175.00635 * 4 2 1 6 6 H 1.08999 * 109.47503 * 54.99385 * 5 4 2 7 7 N 1.46907 * 109.46686 * 294.99714 * 5 4 2 8 8 C 1.46901 * 110.99745 * 155.00087 * 7 5 4 9 9 C 1.52997 * 109.47021 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47144 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99991 * 359.97438 * 10 9 8 12 12 C 1.37886 * 120.00017 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00017 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 119.99782 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47186 * 90.00426 * 14 12 10 16 16 H 1.48503 * 109.47434 * 210.00180 * 14 12 10 17 17 H 1.48498 * 109.47638 * 330.00214 * 14 12 10 18 18 C 1.50697 * 109.47419 * 175.00076 * 5 4 2 19 19 C 1.33387 * 125.20287 * 259.99770 * 18 5 4 20 20 C 1.38427 * 114.91991 * 179.75128 * 19 18 5 21 21 C 1.33381 * 114.92374 * 0.25034 * 20 19 18 22 22 S 1.75886 * 125.20508 * 80.13224 * 18 5 4 23 23 H 1.09003 * 109.47743 * 300.00485 * 1 2 3 24 24 H 1.09007 * 109.47198 * 60.00400 * 1 2 3 25 25 H 1.08996 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47365 * 239.99449 * 2 1 3 27 27 H 1.08996 * 109.47608 * 59.99598 * 3 2 1 28 28 H 1.09005 * 109.46934 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47033 * 299.99230 * 3 2 1 30 30 H 1.09001 * 109.47407 * 55.00005 * 4 2 1 31 31 H 1.09005 * 109.47376 * 294.99955 * 4 2 1 32 32 H 1.00896 * 111.00017 * 278.95130 * 7 5 4 33 33 H 1.09001 * 109.47419 * 300.00056 * 8 7 5 34 34 H 1.09000 * 109.47241 * 60.00130 * 8 7 5 35 35 H 1.09001 * 109.47051 * 300.00258 * 9 8 7 36 36 H 1.09000 * 109.47026 * 59.99975 * 9 8 7 37 37 H 0.96993 * 120.00110 * 179.97438 * 13 12 10 38 38 H 1.08002 * 122.54190 * 0.02679 * 19 18 5 39 39 H 1.08001 * 122.53885 * 180.22673 * 20 19 18 40 40 H 1.08001 * 125.20464 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5647 -0.8308 1.1882 6 1 3.9953 0.1613 1.0528 7 7 3.9490 -1.6895 0.0598 8 6 5.3051 -1.3707 -0.4063 9 6 5.6687 -2.2828 -1.5796 10 6 7.0601 -1.9562 -2.0574 11 1 7.6281 -1.1759 -1.5729 12 6 7.6076 -2.6530 -3.1138 13 7 8.8217 -2.3677 -3.5310 14 14 6.6248 -4.0022 -3.9522 15 1 5.8366 -3.4200 -5.0679 16 1 7.5525 -5.0316 -4.4860 17 1 5.7041 -4.6278 -2.9693 18 6 4.0772 -1.4299 2.4725 19 6 4.6037 -0.7410 3.4860 20 6 5.0019 -1.5074 4.5678 21 6 4.8036 -2.8192 4.4306 22 16 4.0757 -3.1449 2.8629 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6766 1.9565 0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8901 30 1 1.6053 -1.7197 1.2953 31 1 1.7515 -0.1581 2.1370 32 1 3.8709 -2.6651 0.3048 33 1 5.3430 -0.3305 -0.7299 34 1 6.0143 -1.5242 0.4071 35 1 5.6306 -3.3231 -1.2565 36 1 4.9594 -2.1288 -2.3928 37 1 9.2070 -2.8581 -4.2739 38 1 4.7073 0.3339 3.4662 39 1 5.4403 -1.0759 5.4555 40 1 5.0522 -3.5671 5.1690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273176606.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:34 Heat of formation + Delta-G solvation = 7.489560 kcal Electronic energy + Delta-G solvation = -18237.747915 eV Core-core repulsion = 15564.121878 eV Total energy + Delta-G solvation = -2673.626037 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.65178 -36.89185 -35.08663 -32.96803 -31.21111 -28.84420 -27.57043 -27.08330 -24.38665 -23.66853 -21.71034 -20.53066 -19.61808 -19.17968 -17.27644 -16.73564 -15.67148 -15.16846 -14.64506 -14.40888 -14.01352 -13.92590 -13.69344 -13.05402 -12.86366 -12.61864 -12.53831 -12.34493 -12.17689 -11.91934 -11.79301 -11.50796 -11.34139 -11.08241 -10.76234 -10.68370 -10.44162 -10.37023 -10.17314 -9.78514 -9.72896 -9.21415 -8.58929 -8.51738 -8.43345 -8.04656 -6.02544 -4.00649 1.04274 1.65875 2.04644 2.78061 3.34116 3.40912 3.45932 4.47949 4.57596 4.63659 5.04074 5.06995 5.09748 5.18872 5.32138 5.44099 5.51292 5.57518 5.60740 5.68687 5.86213 5.87610 5.93508 6.01401 6.08037 6.11570 6.20526 6.25907 6.29053 6.36494 6.47412 6.48274 6.65421 6.78792 7.12111 7.39336 7.56983 7.70787 7.87801 8.55080 9.01696 9.59917 11.10860 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.005905 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.077075 B = 4740.603305 C = 5948.101759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.094 4.094 5 C 0.151 3.849 6 H 0.096 0.904 7 N -0.678 5.678 8 C 0.073 3.927 9 C -0.009 4.009 10 C -0.519 4.519 11 H 0.070 0.930 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.265 1.265 18 C -0.190 4.190 19 C -0.144 4.144 20 C -0.132 4.132 21 C -0.222 4.222 22 S 0.101 5.899 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.333 0.667 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.013 0.987 36 H 0.021 0.979 37 H 0.263 0.737 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.634 2.704 14.477 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.132 4.132 5 C 0.038 3.962 6 H 0.114 0.886 7 N -0.308 5.308 8 C -0.055 4.055 9 C -0.047 4.047 10 C -0.558 4.558 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.709 3.291 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.310 4.310 19 C -0.175 4.175 20 C -0.163 4.163 21 C -0.357 4.357 22 S 0.364 5.636 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.262 1.733 13.110 20.194 hybrid contribution 0.823 0.123 1.107 1.385 sum -14.439 1.856 14.217 20.348 Atomic orbital electron populations 1.21838 0.95985 1.01323 1.01119 1.21041 0.94532 0.96055 0.99492 1.21870 1.01416 0.96161 1.00946 1.21619 0.93236 1.00651 0.97734 1.20395 0.95476 0.97331 0.82968 0.88597 1.60837 1.28926 1.07752 1.33310 1.22007 0.85364 1.00711 0.97418 1.19538 0.97055 0.94591 0.93505 1.21054 0.98408 1.20306 1.16025 0.91147 1.24999 0.94789 0.96978 0.96620 1.69914 1.15071 1.41846 1.27485 0.86750 0.80133 0.82141 0.80100 1.20238 1.21519 1.18961 1.25798 1.06657 0.96208 1.02318 1.20107 1.02658 1.01195 0.93531 1.20149 1.03053 0.92951 1.00128 1.25575 1.09183 1.00043 1.00946 1.84264 1.60801 1.06484 1.12050 0.93342 0.92960 0.92961 0.89162 0.93445 0.92376 0.93013 0.91985 0.92093 0.84802 0.91620 0.95776 0.96912 0.96084 0.92759 0.84535 0.84616 0.82179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.19 37.16 0.34 -1.13 16 2 C -0.09 -1.09 2.86 -90.62 -0.26 -1.35 16 3 C -0.15 -1.64 8.95 37.16 0.33 -1.31 16 4 C -0.09 -1.12 4.34 -26.73 -0.12 -1.23 16 5 C 0.15 2.08 2.29 -68.86 -0.16 1.93 16 6 H 0.10 1.35 5.98 -51.93 -0.31 1.04 16 7 N -0.68 -11.27 5.62 -107.95 -0.61 -11.87 16 8 C 0.07 1.48 5.42 -3.82 -0.02 1.46 16 9 C -0.01 -0.22 4.30 -27.89 -0.12 -0.34 16 10 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 14 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 17 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 18 C -0.19 -2.60 5.21 -36.00 -0.19 -2.79 16 19 C -0.14 -1.83 10.04 -41.21 -0.41 -2.25 16 20 C -0.13 -1.54 10.18 -41.21 -0.42 -1.96 16 21 C -0.22 -2.61 11.23 29.04 0.33 -2.28 16 22 S 0.10 1.33 22.03 -107.50 -2.37 -1.04 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.09 1.26 7.62 -51.93 -0.40 0.87 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.71 6.46 -51.93 -0.34 0.37 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.33 5.54 7.31 -39.29 -0.29 5.25 16 33 H 0.07 1.34 8.06 -51.93 -0.42 0.92 16 34 H 0.02 0.51 8.00 -51.93 -0.42 0.09 16 35 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 36 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -30.43 334.63 -9.70 -40.13 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.74 Total: 2.42 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -1.12 Total: -24.70 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.17 Total: -39.29 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.37 Total: -1.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.43 -9.70 -40.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273176606.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.617 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds