Wall clock time and date at job start Mon Mar 30 2020 00:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46806 * 2 1 4 4 C 1.52998 * 109.46796 * 119.99458 * 2 1 3 5 5 C 1.53001 * 109.47044 * 175.00635 * 4 2 1 6 6 H 1.08999 * 109.47503 * 54.99385 * 5 4 2 7 7 N 1.46907 * 109.46686 * 294.99714 * 5 4 2 8 8 C 1.46901 * 110.99745 * 155.00087 * 7 5 4 9 9 C 1.52997 * 109.47021 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47144 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99991 * 359.97438 * 10 9 8 12 12 C 1.37886 * 120.00017 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00017 * 179.97438 * 12 10 9 14 14 Si 1.86791 * 119.99782 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47186 * 90.00426 * 14 12 10 16 16 H 1.48503 * 109.47434 * 210.00180 * 14 12 10 17 17 H 1.48498 * 109.47638 * 330.00214 * 14 12 10 18 18 C 1.50697 * 109.47419 * 175.00076 * 5 4 2 19 19 C 1.33387 * 125.20287 * 259.99770 * 18 5 4 20 20 C 1.38427 * 114.91991 * 179.75128 * 19 18 5 21 21 C 1.33381 * 114.92374 * 0.25034 * 20 19 18 22 22 S 1.75886 * 125.20508 * 80.13224 * 18 5 4 23 23 H 1.09003 * 109.47743 * 300.00485 * 1 2 3 24 24 H 1.09007 * 109.47198 * 60.00400 * 1 2 3 25 25 H 1.08996 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47365 * 239.99449 * 2 1 3 27 27 H 1.08996 * 109.47608 * 59.99598 * 3 2 1 28 28 H 1.09005 * 109.46934 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47033 * 299.99230 * 3 2 1 30 30 H 1.09001 * 109.47407 * 55.00005 * 4 2 1 31 31 H 1.09005 * 109.47376 * 294.99955 * 4 2 1 32 32 H 1.00896 * 111.00017 * 278.95130 * 7 5 4 33 33 H 1.09001 * 109.47419 * 300.00056 * 8 7 5 34 34 H 1.09000 * 109.47241 * 60.00130 * 8 7 5 35 35 H 1.09001 * 109.47051 * 300.00258 * 9 8 7 36 36 H 1.09000 * 109.47026 * 59.99975 * 9 8 7 37 37 H 0.96993 * 120.00110 * 179.97438 * 13 12 10 38 38 H 1.08002 * 122.54190 * 0.02679 * 19 18 5 39 39 H 1.08001 * 122.53885 * 180.22673 * 20 19 18 40 40 H 1.08001 * 125.20464 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 3.5647 -0.8308 1.1882 6 1 3.9953 0.1613 1.0528 7 7 3.9490 -1.6895 0.0598 8 6 5.3051 -1.3707 -0.4063 9 6 5.6687 -2.2828 -1.5796 10 6 7.0601 -1.9562 -2.0574 11 1 7.6281 -1.1759 -1.5729 12 6 7.6076 -2.6530 -3.1138 13 7 8.8217 -2.3677 -3.5310 14 14 6.6248 -4.0022 -3.9522 15 1 5.8366 -3.4200 -5.0679 16 1 7.5525 -5.0316 -4.4860 17 1 5.7041 -4.6278 -2.9693 18 6 4.0772 -1.4299 2.4725 19 6 4.6037 -0.7410 3.4860 20 6 5.0019 -1.5074 4.5678 21 6 4.8036 -2.8192 4.4306 22 16 4.0757 -3.1449 2.8629 23 1 -0.3635 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6766 1.9565 0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8901 30 1 1.6053 -1.7197 1.2953 31 1 1.7515 -0.1581 2.1370 32 1 3.8709 -2.6651 0.3048 33 1 5.3430 -0.3305 -0.7299 34 1 6.0143 -1.5242 0.4071 35 1 5.6306 -3.3231 -1.2565 36 1 4.9594 -2.1288 -2.3928 37 1 9.2070 -2.8581 -4.2739 38 1 4.7073 0.3339 3.4662 39 1 5.4403 -1.0759 5.4555 40 1 5.0522 -3.5671 5.1690 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273176606.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:34 Heat of formation + Delta-G solvation = -9.782408 kcal Electronic energy + Delta-G solvation = -18238.496884 eV Core-core repulsion = 15564.121878 eV Total energy + Delta-G solvation = -2674.375006 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.73066 -37.90227 -36.45171 -34.89234 -32.83139 -30.31125 -28.68784 -27.94462 -25.90345 -24.96762 -22.77949 -22.34701 -20.64523 -20.16270 -18.97670 -18.27536 -16.75404 -16.40196 -16.18157 -15.81822 -15.42267 -15.10157 -14.96588 -14.59259 -14.27269 -13.83708 -13.55951 -13.48872 -13.17633 -13.11706 -12.99015 -12.92990 -12.71667 -12.43942 -12.12716 -11.80584 -11.72116 -11.64461 -11.52333 -11.42800 -11.36655 -11.27709 -10.77564 -9.58760 -9.49821 -9.35605 -8.30398 -6.34735 0.07615 0.68042 1.08489 1.36562 1.37602 1.50371 1.84019 2.36079 3.05236 3.25550 3.62760 4.06884 4.15305 4.22023 4.26734 4.36913 4.47575 4.54441 4.63132 4.65982 4.69562 4.86315 4.92177 4.94660 4.96906 5.07784 5.14152 5.15140 5.18836 5.27694 5.36058 5.43093 5.48444 5.55018 5.56802 5.62347 5.70601 6.08917 6.23303 6.40610 6.72986 7.29973 8.86343 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.005905 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.077075 B = 4740.603305 C = 5948.101759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.085 4.085 5 C 0.154 3.846 6 H 0.092 0.908 7 N -0.674 5.674 8 C 0.091 3.909 9 C -0.002 4.002 10 C -0.532 4.532 11 H 0.031 0.969 12 C 0.007 3.993 13 N -0.950 5.950 14 Si 0.952 3.048 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.248 1.248 18 C -0.211 4.211 19 C -0.146 4.146 20 C -0.139 4.139 21 C -0.217 4.217 22 S 0.074 5.926 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.335 0.665 33 H 0.059 0.941 34 H 0.010 0.990 35 H 0.015 0.985 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.548 2.171 15.583 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.123 4.123 5 C 0.042 3.958 6 H 0.110 0.890 7 N -0.304 5.304 8 C -0.038 4.038 9 C -0.040 4.040 10 C -0.570 4.570 11 H 0.049 0.951 12 C -0.190 4.190 13 N -0.591 5.591 14 Si 0.775 3.225 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.172 1.172 18 C -0.330 4.330 19 C -0.177 4.177 20 C -0.170 4.170 21 C -0.352 4.352 22 S 0.337 5.663 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.154 0.846 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.167 0.833 39 H 0.179 0.821 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -17.196 1.211 14.237 22.358 hybrid contribution 1.486 0.370 0.853 1.753 sum -15.710 1.581 15.091 21.841 Atomic orbital electron populations 1.21791 0.94441 1.01671 1.01922 1.21005 0.95826 0.95992 0.98276 1.21848 1.00439 0.96057 1.01846 1.21556 0.91532 1.00836 0.98385 1.20394 0.96794 0.96368 0.82226 0.89031 1.60758 1.26090 1.08330 1.35211 1.21614 0.87143 0.99358 0.95646 1.19415 0.94290 0.95416 0.94904 1.21373 1.00348 1.19318 1.15996 0.95070 1.25973 0.95858 0.99764 0.97401 1.70061 1.17073 1.43525 1.28415 0.85633 0.78793 0.78779 0.79287 1.19107 1.20903 1.17171 1.25749 1.08168 0.96496 1.02607 1.20419 1.01632 1.02094 0.93536 1.20453 1.02883 0.92915 1.00714 1.25924 1.08236 1.00778 1.00310 1.84312 1.61645 1.06648 1.13709 0.92104 0.92599 0.92865 0.91636 0.91887 0.93855 0.92790 0.92136 0.90620 0.84620 0.92236 0.97161 0.96653 0.95806 0.92439 0.83273 0.82062 0.79773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.19 71.98 0.66 -1.90 16 2 C -0.09 -2.06 2.86 -10.79 -0.03 -2.09 16 3 C -0.14 -3.06 8.95 71.98 0.64 -2.42 16 4 C -0.08 -1.89 4.34 30.59 0.13 -1.76 16 5 C 0.15 4.14 2.29 44.17 0.10 4.24 16 6 H 0.09 2.54 5.98 -2.39 -0.01 2.53 16 7 N -0.67 -22.11 5.62 -495.44 -2.78 -24.90 16 8 C 0.09 3.74 5.42 86.30 0.47 4.20 16 9 C 0.00 -0.12 4.30 29.85 0.13 0.01 16 10 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 11 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 12 C 0.01 0.42 5.47 84.66 0.46 0.88 16 13 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 14 Si 0.95 45.32 27.47 68.60 1.88 47.21 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 17 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 18 C -0.21 -5.55 5.21 24.59 0.13 -5.42 16 19 C -0.15 -3.46 10.04 21.22 0.21 -3.25 16 20 C -0.14 -2.93 10.18 21.22 0.22 -2.72 16 21 C -0.22 -4.63 11.23 66.72 0.75 -3.88 16 22 S 0.07 1.87 22.03 -56.49 -1.24 0.62 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 1.79 7.62 -2.39 -0.02 1.78 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.04 1.03 6.46 -2.38 -0.02 1.02 16 29 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.34 10.92 7.31 -89.70 -0.66 10.26 16 33 H 0.06 2.48 8.06 -2.39 -0.02 2.46 16 34 H 0.01 0.44 8.00 -2.39 -0.02 0.42 16 35 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 36 H 0.02 1.14 7.57 -2.39 -0.02 1.12 16 37 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 38 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 39 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -65.90 334.63 2.57 -63.33 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.29 Total: 19.25 kcal Atomic # 6 Polarization: -49.43 SS G_CDS: 4.12 Total: -45.31 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -2.48 Total: -85.10 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.24 Total: 0.62 kcal Total: -65.90 2.57 -63.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273176606.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.550 kcal (2) G-P(sol) polarization free energy of solvation -65.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds