Wall clock time and date at job start Mon Mar 30 2020 01:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.49694 * 110.99975 * 69.87299 * 12 11 10 14 14 C 1.49724 * 104.64422 * 115.31304 * 13 12 11 15 15 H 1.09003 * 108.54077 * 282.60309 * 14 13 12 16 16 C 1.49724 * 127.98249 * 149.17606 * 14 13 12 17 17 C 1.56001 * 103.99420 * 210.27964 * 16 14 13 18 18 C 1.56326 * 105.77410 * 6.93769 * 17 16 14 19 19 C 1.51577 * 101.82060 * 25.42640 * 18 17 16 20 20 H 1.09004 * 111.11049 * 71.49422 * 19 18 17 21 21 C 1.50026 * 111.00062 * 189.65249 * 12 11 10 22 22 H 1.08997 * 110.81134 * 330.90151 * 21 12 11 23 23 C 1.50699 * 110.80971 * 94.41863 * 21 12 11 24 24 O 1.20827 * 119.99884 * 18.53976 * 23 21 12 25 25 O 1.34231 * 120.00214 * 198.54849 * 23 21 12 26 26 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 28 28 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 29 29 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 30 30 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 31 31 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 33 33 H 1.08999 * 110.40419 * 234.10538 * 13 12 11 34 34 H 1.09001 * 110.40407 * 356.40819 * 13 12 11 35 35 H 1.09005 * 110.52642 * 328.90657 * 16 14 13 36 36 H 1.09003 * 110.52726 * 91.50772 * 16 14 13 37 37 H 1.08999 * 110.18820 * 126.01663 * 17 16 14 38 38 H 1.09002 * 110.18679 * 247.86170 * 17 16 14 39 39 H 1.09004 * 110.96162 * 143.56228 * 18 17 16 40 40 H 1.09001 * 110.95879 * 267.25789 * 18 17 16 41 41 H 0.96699 * 117.00210 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0015 13 6 5.7655 -4.6886 -1.3129 14 6 7.1196 -4.9674 -1.8878 15 1 7.5209 -4.0394 -2.2952 16 6 7.5256 -6.0958 -2.7842 17 6 9.0233 -6.3432 -2.4246 18 6 9.3210 -5.4290 -1.1919 19 6 7.9435 -5.2773 -0.5780 20 1 7.6181 -6.2061 -0.1092 21 6 7.5224 -4.0680 0.2322 22 1 8.0022 -3.1642 -0.1433 23 6 7.8277 -4.2702 1.6940 24 8 6.9753 -4.6987 2.4355 25 8 9.0464 -3.9742 2.1724 26 1 -0.4851 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8744 -0.6801 -0.8912 29 1 3.6578 -3.1506 -0.8907 30 1 3.6585 -3.1501 0.8892 31 1 5.9156 -2.1223 0.8873 32 1 5.9141 -2.1230 -0.8927 33 1 5.2194 -5.6192 -1.1585 34 1 5.2028 -4.0228 -1.9672 35 1 6.9303 -6.9844 -2.5737 36 1 7.4240 -5.8082 -3.8306 37 1 9.1795 -7.3898 -2.1632 38 1 9.6623 -6.0646 -3.2626 39 1 10.0049 -5.9191 -0.4990 40 1 9.7157 -4.4636 -1.5088 41 1 9.1948 -4.1203 3.1167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300006550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:47 Heat of formation + Delta-G solvation = -86.001753 kcal Electronic energy + Delta-G solvation = -20883.493991 eV Core-core repulsion = 17763.060995 eV Total energy + Delta-G solvation = -3120.432996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14829 -39.48463 -36.46170 -35.89336 -33.75412 -31.88557 -30.89153 -29.22347 -27.17887 -26.06666 -23.81385 -22.50204 -20.76430 -20.70034 -19.84520 -19.47906 -18.19212 -16.88010 -16.65947 -16.06926 -15.80068 -15.00285 -14.73715 -14.57626 -14.08843 -13.90478 -13.49867 -13.25219 -12.71152 -12.61440 -12.54853 -12.08048 -11.81896 -11.55737 -11.48988 -11.43798 -11.17331 -11.03075 -10.94211 -10.77523 -10.65669 -10.58022 -10.12876 -9.91708 -9.68060 -9.56850 -9.14239 -8.50378 -8.32520 -6.00544 -3.98075 2.23648 2.79141 3.32056 3.39585 3.43559 3.66186 3.97750 4.38726 4.48060 4.56402 4.74224 4.88173 4.95135 5.03753 5.23803 5.26139 5.33092 5.35662 5.42923 5.43993 5.51990 5.59389 5.70366 5.75747 5.82376 5.90186 5.95211 6.07386 6.12349 6.19355 6.47290 6.51461 6.52412 6.78026 6.97851 7.10955 7.38576 7.48670 7.83451 7.96167 8.59015 9.05432 9.62025 11.13093 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.004416 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.124046 B = 6339.229873 C = 6963.837702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.094 4.094 11 C 0.046 3.954 12 N -0.503 5.503 13 C 0.061 3.939 14 C -0.127 4.127 15 H 0.068 0.932 16 C -0.102 4.102 17 C -0.121 4.121 18 C -0.107 4.107 19 C -0.108 4.108 20 H 0.095 0.905 21 C 0.091 3.909 22 H 0.090 0.910 23 C 0.483 3.517 24 O -0.486 6.486 25 O -0.523 6.523 26 H 0.262 0.738 27 H 0.015 0.985 28 H 0.009 0.991 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.369 -11.408 -3.690 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.132 4.132 11 C -0.081 4.081 12 N -0.228 5.228 13 C -0.066 4.066 14 C -0.147 4.147 15 H 0.087 0.913 16 C -0.140 4.140 17 C -0.159 4.159 18 C -0.145 4.145 19 C -0.127 4.127 20 H 0.113 0.887 21 C -0.019 4.019 22 H 0.107 0.893 23 C 0.323 3.677 24 O -0.370 6.370 25 O -0.335 6.335 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.027 0.973 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 21.610 -11.585 -3.472 24.764 hybrid contribution 0.811 1.421 0.102 1.640 sum 22.421 -10.164 -3.370 24.847 Atomic orbital electron populations 1.69920 1.06283 1.26790 1.51390 1.25033 0.94723 0.99117 0.94677 0.86778 0.80384 0.83715 0.78391 1.20372 1.21396 1.19087 1.21140 0.89449 0.94489 1.50437 0.90965 1.19556 0.97262 0.92236 0.96035 1.21443 0.90212 0.99581 1.01992 1.22560 0.98865 0.86530 1.00140 1.64755 1.08305 1.18539 1.31190 1.22057 0.95337 1.00490 0.88715 1.22107 0.96893 0.99989 0.95682 0.91338 1.21330 0.95848 0.97859 0.98950 1.22951 0.95825 0.99746 0.97362 1.21927 0.95199 1.00462 0.96865 1.22455 0.97330 0.97357 0.95544 0.88715 1.21424 0.92233 1.00010 0.88215 0.89252 1.23163 0.79105 0.74247 0.91217 1.90737 1.47090 1.40111 1.59096 1.84509 1.35388 1.80813 1.32754 0.92797 0.96698 0.97307 0.92670 0.91706 0.91445 0.94720 0.89790 0.90591 0.91149 0.91247 0.91414 0.91460 0.91175 0.90990 0.73402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 8 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 9 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 10 C -0.09 -1.95 5.19 -26.74 -0.14 -2.09 16 11 C 0.05 0.79 4.61 -3.83 -0.02 0.77 16 12 N -0.50 -7.60 4.59 -225.86 -1.04 -8.64 16 13 C 0.06 0.78 6.19 -3.88 -0.02 0.75 16 14 C -0.13 -1.28 2.62 -91.23 -0.24 -1.52 16 15 H 0.07 0.70 7.94 -51.93 -0.41 0.28 16 16 C -0.10 -0.81 6.73 -26.75 -0.18 -0.99 16 17 C -0.12 -0.84 6.95 -23.34 -0.16 -1.01 16 18 C -0.11 -0.84 6.59 -25.66 -0.17 -1.01 16 19 C -0.11 -1.10 2.47 -89.45 -0.22 -1.33 16 20 H 0.09 1.07 8.13 -51.93 -0.42 0.65 16 21 C 0.09 1.14 2.61 -67.86 -0.18 0.96 16 22 H 0.09 1.03 7.88 -51.93 -0.41 0.63 16 23 C 0.48 6.54 7.67 36.00 0.28 6.82 16 24 O -0.49 -8.45 17.38 -18.75 -0.33 -8.78 16 25 O -0.52 -5.26 13.42 -39.26 -0.53 -5.78 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.01 0.37 7.20 -51.93 -0.37 -0.01 16 28 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 29 H 0.05 1.11 6.98 -51.93 -0.36 0.75 16 30 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 32 H 0.03 0.54 8.06 -51.93 -0.42 0.13 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.01 6.78 -51.93 -0.35 0.66 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.41 2.43 9.10 45.56 0.41 2.84 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -34.06 327.54 -8.56 -42.62 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -6.12 Total: -1.43 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.60 Total: -12.69 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.26 Total: -36.31 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.85 Total: -14.56 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.06 -8.56 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300006550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.385 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds