Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.49694 * 110.99975 * 69.87299 * 12 11 10 14 14 C 1.49724 * 104.64422 * 115.31304 * 13 12 11 15 15 H 1.09003 * 108.54077 * 282.60309 * 14 13 12 16 16 C 1.49724 * 127.98249 * 149.17606 * 14 13 12 17 17 C 1.56001 * 103.99420 * 210.27964 * 16 14 13 18 18 C 1.56326 * 105.77410 * 6.93769 * 17 16 14 19 19 C 1.51577 * 101.82060 * 25.42640 * 18 17 16 20 20 H 1.09004 * 111.11049 * 71.49422 * 19 18 17 21 21 C 1.50026 * 111.00062 * 189.65249 * 12 11 10 22 22 H 1.08997 * 110.81134 * 330.90151 * 21 12 11 23 23 C 1.50699 * 110.80971 * 94.41863 * 21 12 11 24 24 O 1.20827 * 119.99884 * 18.53976 * 23 21 12 25 25 O 1.34231 * 120.00214 * 198.54849 * 23 21 12 26 26 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 28 28 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 29 29 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 30 30 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 31 31 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 33 33 H 1.08999 * 110.40419 * 234.10538 * 13 12 11 34 34 H 1.09001 * 110.40407 * 356.40819 * 13 12 11 35 35 H 1.09005 * 110.52642 * 328.90657 * 16 14 13 36 36 H 1.09003 * 110.52726 * 91.50772 * 16 14 13 37 37 H 1.08999 * 110.18820 * 126.01663 * 17 16 14 38 38 H 1.09002 * 110.18679 * 247.86170 * 17 16 14 39 39 H 1.09004 * 110.96162 * 143.56228 * 18 17 16 40 40 H 1.09001 * 110.95879 * 267.25789 * 18 17 16 41 41 H 0.96699 * 117.00210 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0015 13 6 5.7655 -4.6886 -1.3129 14 6 7.1196 -4.9674 -1.8878 15 1 7.5209 -4.0394 -2.2952 16 6 7.5256 -6.0958 -2.7842 17 6 9.0233 -6.3432 -2.4246 18 6 9.3210 -5.4290 -1.1919 19 6 7.9435 -5.2773 -0.5780 20 1 7.6181 -6.2061 -0.1092 21 6 7.5224 -4.0680 0.2322 22 1 8.0022 -3.1642 -0.1433 23 6 7.8277 -4.2702 1.6940 24 8 6.9753 -4.6987 2.4355 25 8 9.0464 -3.9742 2.1724 26 1 -0.4851 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8744 -0.6801 -0.8912 29 1 3.6578 -3.1506 -0.8907 30 1 3.6585 -3.1501 0.8892 31 1 5.9156 -2.1223 0.8873 32 1 5.9141 -2.1230 -0.8927 33 1 5.2194 -5.6192 -1.1585 34 1 5.2028 -4.0228 -1.9672 35 1 6.9303 -6.9844 -2.5737 36 1 7.4240 -5.8082 -3.8306 37 1 9.1795 -7.3898 -2.1632 38 1 9.6623 -6.0646 -3.2626 39 1 10.0049 -5.9191 -0.4990 40 1 9.7157 -4.4636 -1.5088 41 1 9.1948 -4.1203 3.1167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300006550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = -109.555000 kcal Electronic energy + Delta-G solvation = -20884.515336 eV Core-core repulsion = 17763.060995 eV Total energy + Delta-G solvation = -3121.454341 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.08701 -40.44639 -37.54143 -36.96776 -35.52878 -33.75070 -31.80382 -30.58017 -28.01204 -27.58870 -24.95417 -23.90140 -22.17951 -21.58023 -20.99872 -20.43726 -19.19391 -18.86820 -17.82604 -17.08013 -16.81516 -16.34490 -16.01344 -15.77744 -15.40790 -14.91508 -14.87599 -14.48358 -14.20702 -13.77708 -13.67860 -13.54965 -13.05188 -12.79261 -12.71795 -12.50269 -12.38252 -12.07845 -12.03022 -11.83185 -11.75025 -11.69796 -11.52390 -11.45706 -11.27496 -11.23862 -10.98248 -10.76881 -9.43831 -8.29897 -6.34629 1.19858 1.34628 1.37828 1.49849 1.86416 2.36028 2.80026 3.01582 3.05111 3.61300 3.78784 3.95045 4.03310 4.06739 4.17704 4.31662 4.34276 4.46005 4.52769 4.59842 4.62869 4.64792 4.72028 4.84728 4.89675 4.95124 4.99226 5.05752 5.12455 5.18714 5.25962 5.42220 5.46812 5.50052 5.55831 5.61622 5.64164 5.73738 5.92591 6.28839 6.73247 7.04841 7.29801 8.87348 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.004416 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.124046 B = 6339.229873 C = 6963.837702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.027 0.973 9 C -0.008 4.008 10 C -0.085 4.085 11 C 0.060 3.940 12 N -0.528 5.528 13 C 0.058 3.942 14 C -0.120 4.120 15 H 0.075 0.925 16 C -0.101 4.101 17 C -0.115 4.115 18 C -0.101 4.101 19 C -0.102 4.102 20 H 0.080 0.920 21 C 0.088 3.912 22 H 0.107 0.893 23 C 0.488 3.512 24 O -0.535 6.535 25 O -0.509 6.509 26 H 0.267 0.733 27 H 0.017 0.983 28 H 0.025 0.975 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.844 -10.572 -4.754 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.045 0.955 9 C -0.046 4.046 10 C -0.123 4.123 11 C -0.068 4.068 12 N -0.253 5.253 13 C -0.068 4.068 14 C -0.140 4.140 15 H 0.093 0.907 16 C -0.140 4.140 17 C -0.153 4.153 18 C -0.139 4.139 19 C -0.121 4.121 20 H 0.099 0.901 21 C -0.020 4.020 22 H 0.125 0.875 23 C 0.330 3.670 24 O -0.423 6.423 25 O -0.322 6.322 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 25.130 -10.769 -4.535 27.714 hybrid contribution -0.329 1.061 0.480 1.210 sum 24.802 -9.707 -4.055 26.941 Atomic orbital electron populations 1.70083 1.08419 1.28227 1.52658 1.26080 0.95671 1.03727 0.93977 0.85586 0.79384 0.77809 0.79420 1.18629 1.20954 1.17079 1.21487 0.92209 0.93042 1.50525 0.95485 1.19481 0.93882 0.94700 0.96548 1.21239 0.93424 0.97002 1.00625 1.22254 0.95643 0.88074 1.00789 1.64590 1.10643 1.17331 1.32785 1.22032 0.97057 0.99741 0.87957 1.22046 0.94719 1.01177 0.96011 0.90703 1.21376 0.96670 0.96884 0.99028 1.22932 0.94961 0.99998 0.97402 1.21954 0.93577 1.01288 0.97098 1.22432 0.99148 0.95614 0.94945 0.90143 1.21535 0.90599 1.01819 0.88093 0.87508 1.23391 0.79255 0.72971 0.91399 1.90728 1.48707 1.42553 1.60297 1.84461 1.33376 1.79852 1.34518 0.92455 0.96513 0.95705 0.92911 0.94333 0.91835 0.92851 0.90593 0.91316 0.91405 0.90261 0.90761 0.89945 0.90424 0.90080 0.71198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.50 13.96 21.45 0.30 -61.21 16 2 C 0.00 0.11 5.47 84.65 0.46 0.57 16 3 Si 0.96 45.06 27.47 68.60 1.88 46.95 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 7 C -0.53 -32.23 9.66 25.60 0.25 -31.98 16 8 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 9 C -0.01 -0.40 4.04 29.84 0.12 -0.28 16 10 C -0.08 -3.56 5.19 30.59 0.16 -3.40 16 11 C 0.06 1.98 4.61 86.30 0.40 2.38 16 12 N -0.53 -15.70 4.59 -868.47 -3.98 -19.68 16 13 C 0.06 1.47 6.19 84.71 0.52 1.99 16 14 C -0.12 -2.18 2.62 -11.19 -0.03 -2.20 16 15 H 0.07 1.29 7.94 -2.39 -0.02 1.27 16 16 C -0.10 -1.38 6.73 30.58 0.21 -1.17 16 17 C -0.12 -1.22 6.95 32.79 0.23 -0.99 16 18 C -0.10 -1.26 6.59 31.29 0.21 -1.06 16 19 C -0.10 -1.89 2.47 -10.04 -0.02 -1.92 16 20 H 0.08 1.74 8.13 -2.38 -0.02 1.72 16 21 C 0.09 2.07 2.61 43.07 0.11 2.18 16 22 H 0.11 2.15 7.88 -2.39 -0.02 2.13 16 23 C 0.49 12.63 7.67 71.24 0.55 13.18 16 24 O -0.53 -18.65 17.38 21.96 0.38 -18.27 16 25 O -0.51 -9.04 13.42 -51.43 -0.69 -9.73 16 26 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 27 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 28 H 0.02 1.13 7.57 -2.39 -0.02 1.11 16 29 H 0.05 2.19 6.98 -2.39 -0.02 2.18 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 2.12 8.09 -2.39 -0.02 2.10 16 32 H 0.05 1.55 8.06 -2.39 -0.02 1.53 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 1.80 6.78 -2.39 -0.02 1.79 16 35 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.43 4.13 9.10 -74.06 -0.67 3.46 16 Total: -1.00 -75.78 327.54 1.33 -74.45 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.28 Total: 10.18 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 3.16 Total: -22.70 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -3.68 Total: -80.89 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.31 Total: -28.00 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.95 kcal Total: -75.78 1.33 -74.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300006550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.102 kcal (2) G-P(sol) polarization free energy of solvation -75.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds