Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00343 * 2 1 4 4 H 1.48504 * 109.46972 * 89.99576 * 3 2 1 5 5 H 1.48500 * 109.47538 * 209.99976 * 3 2 1 6 6 H 1.48505 * 109.47128 * 330.00238 * 3 2 1 7 7 C 1.37876 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00474 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99575 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47199 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47298 * 177.56588 * 11 10 9 13 13 C 1.50105 * 111.00115 * 64.54344 * 12 11 10 14 14 C 1.50912 * 102.23484 * 213.14442 * 13 12 11 15 15 H 1.09004 * 109.99005 * 291.17400 * 14 13 12 16 16 C 1.50304 * 125.70233 * 155.99417 * 14 13 12 17 17 C 1.55937 * 104.16460 * 214.79920 * 16 14 13 18 18 C 1.56398 * 105.79394 * 7.51907 * 17 16 14 19 19 C 1.51019 * 101.60295 * 25.00021 * 18 17 16 20 20 H 1.09005 * 110.05005 * 69.40386 * 19 18 17 21 21 C 1.49621 * 110.99679 * 304.73034 * 12 11 10 22 22 H 1.08999 * 110.36918 * 355.82878 * 21 12 11 23 23 C 1.50705 * 110.36536 * 233.49999 * 21 12 11 24 24 O 1.20826 * 120.00135 * 341.46064 * 23 21 12 25 25 O 1.34228 * 119.99863 * 161.45348 * 23 21 12 26 26 H 0.96994 * 119.99972 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46891 * 299.99329 * 9 7 2 28 28 H 1.08995 * 109.47677 * 59.99609 * 9 7 2 29 29 H 1.08998 * 109.46868 * 299.99736 * 10 9 7 30 30 H 1.09004 * 109.47099 * 59.99528 * 10 9 7 31 31 H 1.09001 * 109.46825 * 297.56352 * 11 10 9 32 32 H 1.08996 * 109.47406 * 57.56346 * 11 10 9 33 33 H 1.09004 * 110.85085 * 331.33093 * 13 12 11 34 34 H 1.09000 * 110.85263 * 94.75248 * 13 12 11 35 35 H 1.08996 * 110.49342 * 333.46853 * 16 14 13 36 36 H 1.09001 * 110.49790 * 95.99718 * 16 14 13 37 37 H 1.09000 * 110.18702 * 126.59259 * 17 16 14 38 38 H 1.09002 * 110.19050 * 248.36131 * 17 16 14 39 39 H 1.09000 * 111.00387 * 143.08682 * 18 17 16 40 40 H 1.09001 * 110.99933 * 266.88582 * 18 17 16 41 41 H 0.96694 * 117.00145 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 7 2.4337 -6.1031 -0.0606 13 6 3.2865 -6.1473 1.1739 14 6 4.5981 -6.6670 0.6380 15 1 4.4895 -7.7076 0.3320 16 6 5.9477 -6.4537 1.2642 17 6 6.9169 -6.3291 0.0490 18 6 6.0045 -6.2886 -1.2207 19 6 4.7111 -5.7590 -0.6485 20 1 4.8304 -4.7150 -0.3588 21 6 3.3446 -5.9685 -1.2399 22 1 3.0573 -5.1088 -1.8451 23 6 3.3191 -7.2270 -2.0685 24 8 2.9094 -8.2578 -1.5893 25 8 3.7513 -7.2028 -3.3391 26 1 -0.4850 -0.8400 -0.0004 27 1 0.6240 -2.5574 0.8881 28 1 0.6246 -2.5563 -0.8919 29 1 2.8725 -3.6039 -0.8909 30 1 2.8712 -3.6047 0.8890 31 1 0.8863 -5.0641 0.9088 32 1 0.8215 -5.0260 -0.8696 33 1 3.4081 -5.1503 1.5974 34 1 2.8666 -6.8315 1.9112 35 1 5.9544 -5.5367 1.8533 36 1 6.2193 -7.3072 1.8855 37 1 7.4979 -5.4099 0.1240 38 1 7.5820 -7.1917 0.0082 39 1 6.4080 -5.6076 -1.9701 40 1 5.8687 -7.2871 -1.6361 41 1 3.7153 -8.0345 -3.8310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300006552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = -90.791267 kcal Electronic energy + Delta-G solvation = -21427.145898 eV Core-core repulsion = 18306.505213 eV Total energy + Delta-G solvation = -3120.640684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33072 -39.23243 -36.50576 -35.90474 -33.87567 -31.59067 -30.83177 -28.84168 -26.95343 -25.51753 -23.65086 -22.72132 -21.64366 -20.13170 -20.03942 -19.39466 -17.93431 -17.06601 -16.68985 -16.24578 -15.32413 -14.86035 -14.79724 -14.25369 -13.98320 -13.76166 -13.37277 -13.23512 -12.90826 -12.67184 -12.29209 -11.73239 -11.63463 -11.48111 -11.38300 -11.28693 -11.18415 -11.08799 -10.93114 -10.70449 -10.51775 -10.22939 -10.17076 -10.15315 -9.85956 -9.76163 -8.74070 -8.34482 -8.09974 -6.37852 -4.07587 2.31739 2.91622 3.41252 3.44780 3.60460 3.83750 4.05026 4.52277 4.54897 4.69085 4.91813 5.03456 5.11868 5.28061 5.30916 5.39101 5.41796 5.43437 5.52058 5.59099 5.65741 5.68413 5.81755 5.84824 5.90760 5.98198 6.06102 6.07470 6.18793 6.24094 6.36183 6.52840 6.55609 6.81263 6.88437 7.13625 7.35191 7.47945 8.02672 8.18566 8.43915 8.86545 9.64933 11.02611 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.004992 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.499197 B = 5607.219859 C = 6029.918724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.011 3.989 10 C -0.139 4.139 11 C 0.044 3.956 12 N -0.506 5.506 13 C 0.055 3.945 14 C -0.119 4.119 15 H 0.083 0.917 16 C -0.105 4.105 17 C -0.121 4.121 18 C -0.103 4.103 19 C -0.126 4.126 20 H 0.098 0.902 21 C 0.090 3.910 22 H 0.111 0.889 23 C 0.489 3.511 24 O -0.498 6.498 25 O -0.520 6.520 26 H 0.269 0.731 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.092 -14.613 -1.820 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.641 4.641 8 H 0.065 0.935 9 C -0.027 4.027 10 C -0.178 4.178 11 C -0.084 4.084 12 N -0.230 5.230 13 C -0.071 4.071 14 C -0.138 4.138 15 H 0.101 0.899 16 C -0.143 4.143 17 C -0.158 4.158 18 C -0.141 4.141 19 C -0.146 4.146 20 H 0.116 0.884 21 C -0.019 4.019 22 H 0.129 0.871 23 C 0.329 3.671 24 O -0.384 6.384 25 O -0.331 6.331 26 H 0.079 0.921 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 11.459 -13.367 -1.503 17.671 hybrid contribution 0.481 -1.454 -0.323 1.566 sum 11.940 -14.822 -1.826 19.120 Atomic orbital electron populations 1.70750 1.06887 1.30645 1.46647 1.25841 0.96563 1.02730 0.93799 0.83530 0.74674 0.75197 0.76749 1.21462 1.21531 1.20950 1.22060 0.94168 0.92071 1.55753 0.93476 1.19157 0.94490 0.92998 0.96031 1.22207 0.99783 0.95151 1.00633 1.22547 0.94595 0.88283 1.02966 1.64815 1.14914 1.43480 0.99797 1.22400 0.91413 1.00992 0.92338 1.22245 0.94366 1.00550 0.96638 0.89869 1.21471 0.93335 1.02132 0.97351 1.22947 0.97538 1.01970 0.93367 1.21779 0.94078 1.00903 0.97371 1.22437 0.92591 1.01945 0.97590 0.88413 1.21093 0.94350 0.93156 0.93337 0.87115 1.23366 0.72882 0.91050 0.79780 1.90665 1.42192 1.33630 1.71933 1.84568 1.78919 1.43139 1.26478 0.92055 0.97426 0.97440 0.92941 0.92772 0.90232 0.90809 0.91614 0.89805 0.91184 0.91481 0.91248 0.91645 0.90825 0.91751 0.73757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.00 13.65 55.43 0.76 -27.24 16 2 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 3 Si 1.07 25.28 29.90 -169.99 -5.08 20.20 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.60 -17.01 9.11 -34.44 -0.31 -17.33 16 8 H 0.05 1.31 7.74 -52.49 -0.41 0.90 16 9 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 10 C -0.14 -2.74 4.20 -26.73 -0.11 -2.85 16 11 C 0.04 0.74 5.31 -3.82 -0.02 0.72 16 12 N -0.51 -7.92 4.80 -225.80 -1.08 -9.00 16 13 C 0.05 0.76 6.34 -3.07 -0.02 0.74 16 14 C -0.12 -1.47 2.77 -90.34 -0.25 -1.72 16 15 H 0.08 1.15 7.23 -51.93 -0.38 0.77 16 16 C -0.10 -1.06 6.69 -26.51 -0.18 -1.24 16 17 C -0.12 -1.13 6.95 -23.33 -0.16 -1.29 16 18 C -0.10 -1.10 6.28 -25.90 -0.16 -1.26 16 19 C -0.13 -1.60 2.41 -90.26 -0.22 -1.82 16 20 H 0.10 1.34 7.57 -51.93 -0.39 0.95 16 21 C 0.09 1.31 2.41 -68.66 -0.17 1.15 16 22 H 0.11 1.69 6.14 -51.93 -0.32 1.37 16 23 C 0.49 6.96 6.09 36.01 0.22 7.18 16 24 O -0.50 -8.38 16.78 -18.75 -0.31 -8.69 16 25 O -0.52 -5.80 13.42 -39.25 -0.53 -6.33 16 26 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 27 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 28 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 29 H 0.05 1.02 5.87 -51.93 -0.31 0.72 16 30 H 0.05 1.06 6.30 -51.93 -0.33 0.73 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 0.95 5.95 -51.93 -0.31 0.64 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.69 7.34 -51.93 -0.38 0.31 16 41 H 0.40 2.69 9.10 45.56 0.41 3.10 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -32.71 319.80 -8.74 -41.45 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.71 Total: 2.04 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.60 Total: -17.25 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.33 Total: -36.24 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.84 Total: -15.02 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.71 -8.74 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300006552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.344 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds