Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00343 * 2 1 4 4 H 1.48504 * 109.46972 * 89.99576 * 3 2 1 5 5 H 1.48500 * 109.47538 * 209.99976 * 3 2 1 6 6 H 1.48505 * 109.47128 * 330.00238 * 3 2 1 7 7 C 1.37876 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00474 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99575 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47199 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47298 * 177.56588 * 11 10 9 13 13 C 1.50105 * 111.00115 * 64.54344 * 12 11 10 14 14 C 1.50912 * 102.23484 * 213.14442 * 13 12 11 15 15 H 1.09004 * 109.99005 * 291.17400 * 14 13 12 16 16 C 1.50304 * 125.70233 * 155.99417 * 14 13 12 17 17 C 1.55937 * 104.16460 * 214.79920 * 16 14 13 18 18 C 1.56398 * 105.79394 * 7.51907 * 17 16 14 19 19 C 1.51019 * 101.60295 * 25.00021 * 18 17 16 20 20 H 1.09005 * 110.05005 * 69.40386 * 19 18 17 21 21 C 1.49621 * 110.99679 * 304.73034 * 12 11 10 22 22 H 1.08999 * 110.36918 * 355.82878 * 21 12 11 23 23 C 1.50705 * 110.36536 * 233.49999 * 21 12 11 24 24 O 1.20826 * 120.00135 * 341.46064 * 23 21 12 25 25 O 1.34228 * 119.99863 * 161.45348 * 23 21 12 26 26 H 0.96994 * 119.99972 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46891 * 299.99329 * 9 7 2 28 28 H 1.08995 * 109.47677 * 59.99609 * 9 7 2 29 29 H 1.08998 * 109.46868 * 299.99736 * 10 9 7 30 30 H 1.09004 * 109.47099 * 59.99528 * 10 9 7 31 31 H 1.09001 * 109.46825 * 297.56352 * 11 10 9 32 32 H 1.08996 * 109.47406 * 57.56346 * 11 10 9 33 33 H 1.09004 * 110.85085 * 331.33093 * 13 12 11 34 34 H 1.09000 * 110.85263 * 94.75248 * 13 12 11 35 35 H 1.08996 * 110.49342 * 333.46853 * 16 14 13 36 36 H 1.09001 * 110.49790 * 95.99718 * 16 14 13 37 37 H 1.09000 * 110.18702 * 126.59259 * 17 16 14 38 38 H 1.09002 * 110.19050 * 248.36131 * 17 16 14 39 39 H 1.09000 * 111.00387 * 143.08682 * 18 17 16 40 40 H 1.09001 * 110.99933 * 266.88582 * 18 17 16 41 41 H 0.96694 * 117.00145 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 7 2.4337 -6.1031 -0.0606 13 6 3.2865 -6.1473 1.1739 14 6 4.5981 -6.6670 0.6380 15 1 4.4895 -7.7076 0.3320 16 6 5.9477 -6.4537 1.2642 17 6 6.9169 -6.3291 0.0490 18 6 6.0045 -6.2886 -1.2207 19 6 4.7111 -5.7590 -0.6485 20 1 4.8304 -4.7150 -0.3588 21 6 3.3446 -5.9685 -1.2399 22 1 3.0573 -5.1088 -1.8451 23 6 3.3191 -7.2270 -2.0685 24 8 2.9094 -8.2578 -1.5893 25 8 3.7513 -7.2028 -3.3391 26 1 -0.4850 -0.8400 -0.0004 27 1 0.6240 -2.5574 0.8881 28 1 0.6246 -2.5563 -0.8919 29 1 2.8725 -3.6039 -0.8909 30 1 2.8712 -3.6047 0.8890 31 1 0.8863 -5.0641 0.9088 32 1 0.8215 -5.0260 -0.8696 33 1 3.4081 -5.1503 1.5974 34 1 2.8666 -6.8315 1.9112 35 1 5.9544 -5.5367 1.8533 36 1 6.2193 -7.3072 1.8855 37 1 7.4979 -5.4099 0.1240 38 1 7.5820 -7.1917 0.0082 39 1 6.4080 -5.6076 -1.9701 40 1 5.8687 -7.2871 -1.6361 41 1 3.7153 -8.0345 -3.8310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300006552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = -112.326807 kcal Electronic energy + Delta-G solvation = -21428.079749 eV Core-core repulsion = 18306.505213 eV Total energy + Delta-G solvation = -3121.574536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41881 -40.30654 -37.72540 -37.01283 -35.77636 -33.26884 -31.86664 -30.25024 -27.90716 -27.21340 -25.05399 -24.11814 -23.18244 -21.32116 -21.08268 -20.48197 -19.06574 -18.87626 -18.09433 -17.28056 -16.39363 -16.11156 -16.02260 -15.65137 -15.49669 -15.17614 -14.93640 -14.52089 -14.09539 -13.77115 -13.54439 -13.50941 -13.10134 -12.77047 -12.64440 -12.52676 -12.37664 -12.25622 -12.12057 -11.96151 -11.92160 -11.70127 -11.60031 -11.33073 -11.29352 -11.07630 -10.78376 -10.54780 -9.47082 -8.68262 -6.40024 1.19539 1.51546 1.60639 1.78039 1.87802 2.55882 2.84775 2.92118 3.15549 3.59299 3.70250 3.91107 3.97998 4.06985 4.18004 4.25508 4.31606 4.35264 4.44324 4.47590 4.56486 4.63113 4.65479 4.73623 4.83585 4.92641 4.98429 5.02291 5.04915 5.12923 5.16742 5.30873 5.36626 5.42871 5.45502 5.59176 5.66136 5.84008 5.98804 6.18179 6.57328 7.04572 7.42178 8.71667 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.004992 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.499197 B = 5607.219859 C = 6029.918724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.118 2.882 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.617 4.617 8 H 0.050 0.950 9 C 0.011 3.989 10 C -0.119 4.119 11 C 0.056 3.944 12 N -0.514 5.514 13 C 0.052 3.948 14 C -0.110 4.110 15 H 0.071 0.929 16 C -0.103 4.103 17 C -0.115 4.115 18 C -0.101 4.101 19 C -0.125 4.125 20 H 0.087 0.913 21 C 0.083 3.917 22 H 0.101 0.899 23 C 0.497 3.503 24 O -0.528 6.528 25 O -0.511 6.511 26 H 0.255 0.745 27 H -0.011 1.011 28 H -0.012 1.012 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.405 -14.904 -1.931 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.237 4.237 3 Si 0.939 3.061 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.209 1.209 7 C -0.655 4.655 8 H 0.069 0.931 9 C -0.027 4.027 10 C -0.158 4.158 11 C -0.072 4.072 12 N -0.238 5.238 13 C -0.074 4.074 14 C -0.129 4.129 15 H 0.090 0.910 16 C -0.141 4.141 17 C -0.153 4.153 18 C -0.139 4.139 19 C -0.144 4.144 20 H 0.106 0.894 21 C -0.026 4.026 22 H 0.119 0.881 23 C 0.339 3.661 24 O -0.416 6.416 25 O -0.325 6.325 26 H 0.065 0.935 27 H 0.008 0.992 28 H 0.007 0.993 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 13.791 -13.696 -1.634 19.505 hybrid contribution -0.261 -1.422 -0.344 1.487 sum 13.530 -15.118 -1.978 20.385 Atomic orbital electron populations 1.70889 1.08002 1.29890 1.48871 1.27427 0.96608 1.06908 0.92780 0.82925 0.74236 0.71071 0.77827 1.19760 1.19264 1.20905 1.22498 0.94609 0.93410 1.54939 0.93147 1.19108 0.95022 0.94400 0.94167 1.21977 0.98575 0.94412 1.00841 1.22322 0.94668 0.87498 1.02748 1.64842 1.15737 1.42122 1.01061 1.22456 0.92232 1.00922 0.91780 1.22183 0.94695 0.99500 0.96504 0.91049 1.21509 0.91956 1.02773 0.97867 1.22940 0.97233 1.03168 0.91949 1.21805 0.93023 1.00831 0.98224 1.22433 0.92605 1.01498 0.97897 0.89443 1.21138 0.95299 0.93187 0.92995 0.88140 1.23170 0.72254 0.90283 0.80397 1.90658 1.43694 1.34486 1.72750 1.84510 1.78020 1.44745 1.25192 0.93522 0.99227 0.99341 0.92693 0.92489 0.90195 0.91397 0.92162 0.89231 0.91154 0.90091 0.90456 0.90039 0.90117 0.91796 0.71232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.56 13.65 21.45 0.29 -58.27 16 2 C -0.04 -2.32 5.46 84.65 0.46 -1.86 16 3 Si 1.12 50.08 29.90 68.60 2.05 52.13 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.62 -35.01 9.11 25.60 0.23 -34.78 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.01 0.55 4.28 29.85 0.13 0.68 16 10 C -0.12 -4.73 4.20 30.59 0.13 -4.60 16 11 C 0.06 1.92 5.31 86.30 0.46 2.38 16 12 N -0.51 -15.92 4.80 -868.31 -4.17 -20.09 16 13 C 0.05 1.41 6.34 85.00 0.54 1.95 16 14 C -0.11 -2.55 2.77 -10.62 -0.03 -2.58 16 15 H 0.07 1.87 7.23 -2.38 -0.02 1.85 16 16 C -0.10 -1.85 6.69 30.74 0.21 -1.64 16 17 C -0.12 -1.83 6.95 32.79 0.23 -1.60 16 18 C -0.10 -1.92 6.28 31.13 0.20 -1.72 16 19 C -0.12 -3.01 2.41 -10.56 -0.03 -3.04 16 20 H 0.09 2.30 7.57 -2.38 -0.02 2.28 16 21 C 0.08 2.37 2.41 42.79 0.10 2.47 16 22 H 0.10 3.05 6.14 -2.39 -0.01 3.04 16 23 C 0.50 13.62 6.09 71.24 0.43 14.06 16 24 O -0.53 -17.29 16.78 21.96 0.37 -16.92 16 25 O -0.51 -10.48 13.42 -51.40 -0.69 -11.17 16 26 H 0.26 16.13 7.22 -92.71 -0.67 15.46 16 27 H -0.01 -0.58 8.01 -2.38 -0.02 -0.60 16 28 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16 29 H 0.05 2.14 5.87 -2.39 -0.01 2.13 16 30 H 0.06 2.22 6.30 -2.39 -0.02 2.20 16 31 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.06 1.69 5.95 -2.38 -0.01 1.68 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.23 7.34 -2.39 -0.02 1.21 16 41 H 0.43 4.72 9.10 -74.06 -0.67 4.04 16 Total: -1.00 -70.09 319.80 1.36 -68.73 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.45 Total: 15.88 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 3.06 Total: -30.28 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -3.88 Total: -78.36 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.32 Total: -28.09 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -70.09 1.36 -68.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300006552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.601 kcal (2) G-P(sol) polarization free energy of solvation -70.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds