Wall clock time and date at job start Mon Mar 30 2020 00:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47511 * 2 1 4 4 H 1.09000 * 109.47312 * 305.94828 * 3 2 1 5 5 C 1.50695 * 109.47437 * 185.94604 * 3 2 1 6 6 H 1.08004 * 120.00042 * 241.42079 * 5 3 2 7 7 C 1.37879 * 119.99965 * 61.41827 * 5 3 2 8 8 N 1.31512 * 119.99718 * 195.16163 * 7 5 3 9 9 Si 1.86796 * 119.99978 * 15.16716 * 7 5 3 10 10 H 1.48497 * 109.47277 * 95.34784 * 9 7 5 11 11 H 1.48500 * 109.46802 * 215.35148 * 9 7 5 12 12 H 1.48498 * 109.46863 * 335.34587 * 9 7 5 13 13 N 1.46901 * 109.46715 * 65.94465 * 3 2 1 14 14 C 1.46903 * 111.00273 * 264.05746 * 13 3 2 15 15 H 1.09000 * 109.46606 * 42.05906 * 14 13 3 16 16 C 1.52994 * 109.47120 * 282.05895 * 14 13 3 17 17 C 1.52995 * 109.47085 * 162.05882 * 14 13 3 18 18 C 1.53006 * 109.47252 * 295.00170 * 17 14 13 19 19 C 1.50700 * 109.46915 * 180.02562 * 18 17 14 20 20 C 1.38419 * 122.54310 * 269.99313 * 19 18 17 21 21 C 1.33390 * 114.92525 * 179.97438 * 20 19 18 22 22 S 1.75880 * 109.59010 * 359.75886 * 21 20 19 23 23 C 1.33391 * 122.53955 * 89.97596 * 19 18 17 24 24 H 1.08996 * 109.47549 * 181.69002 * 1 2 3 25 25 H 1.09001 * 109.46964 * 301.69237 * 1 2 3 26 26 H 1.09001 * 109.46955 * 61.68769 * 1 2 3 27 27 H 1.09004 * 109.47266 * 240.00329 * 2 1 3 28 28 H 1.08997 * 109.46826 * 120.00791 * 2 1 3 29 29 H 0.96998 * 119.99797 * 179.97438 * 8 7 5 30 30 H 1.00907 * 110.99828 * 140.10627 * 13 3 2 31 31 H 1.09002 * 109.47575 * 300.00045 * 16 14 13 32 32 H 1.09000 * 109.47374 * 59.99754 * 16 14 13 33 33 H 1.09000 * 109.47239 * 179.97438 * 16 14 13 34 34 H 1.08998 * 109.47104 * 175.00272 * 17 14 13 35 35 H 1.09000 * 109.47458 * 55.00199 * 17 14 13 36 36 H 1.08998 * 109.46982 * 60.00028 * 18 17 14 37 37 H 1.08996 * 109.46722 * 299.99624 * 18 17 14 38 38 H 1.08001 * 122.53840 * 359.96708 * 20 19 18 39 39 H 1.07996 * 125.20369 * 180.02562 * 21 20 19 40 40 H 1.08005 * 125.20116 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5925 1.9861 -0.8319 5 6 3.5398 1.4450 -0.1472 6 1 4.1583 1.8647 0.6325 7 6 4.1225 0.9114 -1.2772 8 7 5.4090 0.6384 -1.2871 9 14 3.0848 0.5766 -2.7938 10 1 3.1846 1.7282 -3.7260 11 1 3.5769 -0.6511 -3.4691 12 1 1.6680 0.3863 -2.3920 13 7 1.6710 2.0922 1.2647 14 6 0.4273 2.8602 1.1188 15 1 -0.2873 2.2857 0.5293 16 6 0.7251 4.1836 0.4113 17 6 -0.1629 3.1427 2.5018 18 6 -0.5759 1.8243 3.1592 19 6 -1.1578 2.1028 4.5212 20 6 -0.3832 2.1435 5.6676 21 6 -1.0545 2.4030 6.7907 22 16 -2.7602 2.6206 6.4212 23 6 -2.4582 2.3290 4.7132 24 1 -0.3634 -1.0272 0.0303 25 1 -0.3633 0.5399 0.8744 26 1 -0.3633 0.4874 -0.9047 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 5.8188 0.2627 -2.0819 30 1 2.4201 2.6780 1.6024 31 1 1.4397 4.7581 1.0008 32 1 1.1455 3.9823 -0.5740 33 1 -0.1979 4.7532 0.3026 34 1 -1.0361 3.7869 2.3995 35 1 0.5842 3.6391 3.1212 36 1 0.2973 1.1801 3.2615 37 1 -1.3231 1.3280 2.5399 38 1 0.6839 1.9777 5.6539 39 1 -0.6169 2.4734 7.7755 40 1 -3.2100 2.3370 3.9378 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310030721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:17 Heat of formation + Delta-G solvation = 17.793821 kcal Electronic energy + Delta-G solvation = -18486.642174 eV Core-core repulsion = 15813.462963 eV Total energy + Delta-G solvation = -2673.179211 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.59901 -37.27945 -34.03210 -31.95083 -31.32292 -29.31131 -28.18361 -26.46891 -24.54334 -22.52989 -22.21342 -20.11967 -19.66644 -18.63124 -17.50107 -16.78680 -15.59318 -15.21919 -14.55226 -13.99749 -13.71559 -13.26418 -13.08220 -12.94874 -12.92412 -12.67842 -12.37243 -12.26800 -12.16922 -11.83158 -11.55999 -11.49549 -11.00929 -10.87487 -10.82248 -10.63954 -10.53084 -10.27184 -9.88059 -9.82350 -9.22276 -9.07898 -8.78945 -8.44458 -8.33250 -7.37051 -6.12548 -4.07144 1.01885 1.66898 1.98343 2.76988 3.26718 3.37057 3.40524 4.40821 4.90645 5.02419 5.07379 5.22836 5.27959 5.41669 5.55354 5.64093 5.71792 5.81575 5.95566 6.00697 6.05372 6.07803 6.10648 6.17182 6.26506 6.32912 6.43524 6.45867 6.55076 6.65368 6.75337 6.76290 6.83809 7.05691 7.09465 7.48849 7.68890 8.03797 8.40744 8.64857 8.97066 9.54119 11.00486 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.034246 B = 0.004049 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.423480 B = 6914.476758 C = 6964.400622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C 0.192 3.808 4 H 0.002 0.998 5 C -0.529 4.529 6 H 0.075 0.925 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.861 3.139 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.248 1.248 13 N -0.671 5.671 14 C 0.074 3.926 15 H 0.078 0.922 16 C -0.181 4.181 17 C -0.096 4.096 18 C -0.057 4.057 19 C -0.088 4.088 20 C -0.124 4.124 21 C -0.214 4.214 22 S 0.062 5.938 23 C -0.217 4.217 24 H 0.034 0.966 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.263 0.737 30 H 0.338 0.662 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.143 0.857 39 H 0.161 0.839 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.373 4.122 11.230 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C 0.083 3.917 4 H 0.019 0.981 5 C -0.567 4.567 6 H 0.093 0.907 7 C -0.126 4.126 8 N -0.529 5.529 9 Si 0.688 3.312 10 H -0.211 1.211 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.302 5.302 14 C -0.037 4.037 15 H 0.096 0.904 16 C -0.240 4.240 17 C -0.134 4.134 18 C -0.096 4.096 19 C -0.100 4.100 20 C -0.154 4.154 21 C -0.349 4.349 22 S 0.325 5.675 23 C -0.352 4.352 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.156 0.844 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.161 0.839 39 H 0.178 0.822 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.831 3.806 12.263 21.170 hybrid contribution 1.196 0.272 -2.283 2.592 sum -15.635 4.078 9.980 18.992 Atomic orbital electron populations 1.22024 0.98860 0.99701 1.00775 1.21879 0.92591 0.99534 1.00740 1.19414 0.95370 0.90589 0.86315 0.98061 1.21193 0.89571 1.40629 1.05279 0.90723 1.24893 0.94711 0.94278 0.98669 1.69985 1.11383 1.42592 1.28913 0.87259 0.82592 0.77759 0.83559 1.21086 1.21353 1.17173 1.60660 1.04597 1.33740 1.31203 1.21775 0.94597 0.92660 0.94688 0.90361 1.22517 1.00879 0.98847 1.01775 1.21518 0.99588 0.96173 0.96133 1.20359 1.01079 0.98549 0.89651 1.19234 0.92492 1.00874 0.97371 1.20247 1.01619 1.02320 0.91238 1.25552 0.96198 1.10431 1.02715 1.84129 1.08501 1.71574 1.03273 1.25423 0.99954 1.11491 0.98340 0.94709 0.91870 0.94519 0.93342 0.92286 0.92726 0.84366 0.92873 0.92259 0.93484 0.92803 0.92131 0.88899 0.91657 0.83931 0.82156 0.82214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.75 37.16 0.32 -2.47 16 2 C -0.11 -2.35 4.78 -26.73 -0.13 -2.48 16 3 C 0.19 4.31 1.55 -68.87 -0.11 4.20 16 4 H 0.00 0.04 5.51 -51.93 -0.29 -0.24 16 5 C -0.53 -14.30 9.06 -34.44 -0.31 -14.61 16 6 H 0.07 2.19 7.72 -52.48 -0.41 1.78 16 7 C 0.08 2.18 5.32 -17.82 -0.09 2.08 16 8 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 9 Si 0.86 20.95 25.69 -169.99 -4.37 16.59 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.25 -5.67 5.36 56.52 0.30 -5.37 16 13 N -0.67 -12.65 5.35 -100.96 -0.54 -13.19 16 14 C 0.07 1.16 1.79 -67.72 -0.12 1.03 16 15 H 0.08 1.27 5.47 -51.93 -0.28 0.98 16 16 C -0.18 -2.78 9.14 37.15 0.34 -2.44 16 17 C -0.10 -1.27 4.87 -26.73 -0.13 -1.40 16 18 C -0.06 -0.74 4.68 -27.88 -0.13 -0.87 16 19 C -0.09 -1.07 5.05 -106.25 -0.54 -1.61 16 20 C -0.12 -1.45 9.98 -41.21 -0.41 -1.86 16 21 C -0.21 -2.24 11.23 29.04 0.33 -1.91 16 22 S 0.06 0.64 23.34 -107.50 -2.51 -1.87 16 23 C -0.22 -2.44 10.98 29.04 0.32 -2.12 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 1.03 4.30 -51.93 -0.22 0.81 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 1.11 4.55 -51.93 -0.24 0.88 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.34 6.61 7.86 -39.29 -0.31 6.30 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.03 7.09 -51.93 -0.37 0.66 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.37 7.74 -51.93 -0.40 0.97 16 37 H 0.06 0.83 7.21 -51.93 -0.37 0.46 16 38 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 322.01 15.07 4.85 4.85 Total: -1.00 -28.49 322.01 -8.80 -37.29 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.35 Total: 6.81 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -0.66 Total: -24.46 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.23 Total: -39.21 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.37 Total: 16.59 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.51 Total: -1.87 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.49 -8.80 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310030721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.087 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds