Wall clock time and date at job start Mon Mar 30 2020 00:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47511 * 2 1 4 4 H 1.09000 * 109.47312 * 305.94828 * 3 2 1 5 5 C 1.50695 * 109.47437 * 185.94604 * 3 2 1 6 6 H 1.08004 * 120.00042 * 241.42079 * 5 3 2 7 7 C 1.37879 * 119.99965 * 61.41827 * 5 3 2 8 8 N 1.31512 * 119.99718 * 195.16163 * 7 5 3 9 9 Si 1.86796 * 119.99978 * 15.16716 * 7 5 3 10 10 H 1.48497 * 109.47277 * 95.34784 * 9 7 5 11 11 H 1.48500 * 109.46802 * 215.35148 * 9 7 5 12 12 H 1.48498 * 109.46863 * 335.34587 * 9 7 5 13 13 N 1.46901 * 109.46715 * 65.94465 * 3 2 1 14 14 C 1.46903 * 111.00273 * 264.05746 * 13 3 2 15 15 H 1.09000 * 109.46606 * 42.05906 * 14 13 3 16 16 C 1.52994 * 109.47120 * 282.05895 * 14 13 3 17 17 C 1.52995 * 109.47085 * 162.05882 * 14 13 3 18 18 C 1.53006 * 109.47252 * 295.00170 * 17 14 13 19 19 C 1.50700 * 109.46915 * 180.02562 * 18 17 14 20 20 C 1.38419 * 122.54310 * 269.99313 * 19 18 17 21 21 C 1.33390 * 114.92525 * 179.97438 * 20 19 18 22 22 S 1.75880 * 109.59010 * 359.75886 * 21 20 19 23 23 C 1.33391 * 122.53955 * 89.97596 * 19 18 17 24 24 H 1.08996 * 109.47549 * 181.69002 * 1 2 3 25 25 H 1.09001 * 109.46964 * 301.69237 * 1 2 3 26 26 H 1.09001 * 109.46955 * 61.68769 * 1 2 3 27 27 H 1.09004 * 109.47266 * 240.00329 * 2 1 3 28 28 H 1.08997 * 109.46826 * 120.00791 * 2 1 3 29 29 H 0.96998 * 119.99797 * 179.97438 * 8 7 5 30 30 H 1.00907 * 110.99828 * 140.10627 * 13 3 2 31 31 H 1.09002 * 109.47575 * 300.00045 * 16 14 13 32 32 H 1.09000 * 109.47374 * 59.99754 * 16 14 13 33 33 H 1.09000 * 109.47239 * 179.97438 * 16 14 13 34 34 H 1.08998 * 109.47104 * 175.00272 * 17 14 13 35 35 H 1.09000 * 109.47458 * 55.00199 * 17 14 13 36 36 H 1.08998 * 109.46982 * 60.00028 * 18 17 14 37 37 H 1.08996 * 109.46722 * 299.99624 * 18 17 14 38 38 H 1.08001 * 122.53840 * 359.96708 * 20 19 18 39 39 H 1.07996 * 125.20369 * 180.02562 * 21 20 19 40 40 H 1.08005 * 125.20116 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5925 1.9861 -0.8319 5 6 3.5398 1.4450 -0.1472 6 1 4.1583 1.8647 0.6325 7 6 4.1225 0.9114 -1.2772 8 7 5.4090 0.6384 -1.2871 9 14 3.0848 0.5766 -2.7938 10 1 3.1846 1.7282 -3.7260 11 1 3.5769 -0.6511 -3.4691 12 1 1.6680 0.3863 -2.3920 13 7 1.6710 2.0922 1.2647 14 6 0.4273 2.8602 1.1188 15 1 -0.2873 2.2857 0.5293 16 6 0.7251 4.1836 0.4113 17 6 -0.1629 3.1427 2.5018 18 6 -0.5759 1.8243 3.1592 19 6 -1.1578 2.1028 4.5212 20 6 -0.3832 2.1435 5.6676 21 6 -1.0545 2.4030 6.7907 22 16 -2.7602 2.6206 6.4212 23 6 -2.4582 2.3290 4.7132 24 1 -0.3634 -1.0272 0.0303 25 1 -0.3633 0.5399 0.8744 26 1 -0.3633 0.4874 -0.9047 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 5.8188 0.2627 -2.0819 30 1 2.4201 2.6780 1.6024 31 1 1.4397 4.7581 1.0008 32 1 1.1455 3.9823 -0.5740 33 1 -0.1979 4.7532 0.3026 34 1 -1.0361 3.7869 2.3995 35 1 0.5842 3.6391 3.1212 36 1 0.2973 1.1801 3.2615 37 1 -1.3231 1.3280 2.5399 38 1 0.6839 1.9777 5.6539 39 1 -0.6169 2.4734 7.7755 40 1 -3.2100 2.3370 3.9378 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310030721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:17 Heat of formation + Delta-G solvation = 1.302001 kcal Electronic energy + Delta-G solvation = -18487.357313 eV Core-core repulsion = 15813.462963 eV Total energy + Delta-G solvation = -2673.894350 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.65334 -38.61347 -35.60853 -33.89023 -32.52880 -30.64994 -29.24327 -28.25541 -25.57578 -24.29868 -23.18429 -21.45889 -21.37462 -19.49565 -18.79622 -18.33300 -17.25487 -16.36888 -15.93637 -15.33499 -15.28463 -14.73562 -14.60821 -14.19301 -13.92096 -13.91436 -13.71785 -13.54003 -13.45562 -13.14748 -13.02192 -12.73008 -12.60089 -12.34946 -12.23599 -11.99635 -11.74001 -11.65930 -11.36146 -11.34882 -11.06428 -10.86102 -10.55190 -9.62331 -9.18863 -8.90774 -8.30722 -6.28828 0.18426 0.86698 1.15510 1.32693 1.37496 1.47489 1.88403 2.35431 3.04393 3.64941 3.96096 4.11719 4.25859 4.38561 4.47796 4.53542 4.55234 4.58311 4.68825 4.74746 4.78671 4.85077 4.93269 4.94805 5.02310 5.11550 5.20148 5.25530 5.30208 5.33746 5.44346 5.48633 5.49873 5.61556 5.68307 5.80616 5.87296 6.09878 6.58726 6.77284 6.96572 7.36976 8.85941 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.034246 B = 0.004049 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.423480 B = 6914.476758 C = 6964.400622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.200 3.800 4 H 0.000 1.000 5 C -0.530 4.530 6 H 0.036 0.964 7 C 0.021 3.979 8 N -0.942 5.942 9 Si 0.923 3.077 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.222 1.222 13 N -0.669 5.669 14 C 0.073 3.927 15 H 0.081 0.919 16 C -0.178 4.178 17 C -0.085 4.085 18 C -0.049 4.049 19 C -0.103 4.103 20 C -0.145 4.145 21 C -0.215 4.215 22 S 0.088 5.912 23 C -0.222 4.222 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.331 0.669 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.140 0.860 39 H 0.181 0.819 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.599 4.477 11.508 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C 0.090 3.910 4 H 0.018 0.982 5 C -0.568 4.568 6 H 0.054 0.946 7 C -0.178 4.178 8 N -0.582 5.582 9 Si 0.747 3.253 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.145 1.145 13 N -0.299 5.299 14 C -0.037 4.037 15 H 0.099 0.901 16 C -0.237 4.237 17 C -0.123 4.123 18 C -0.089 4.089 19 C -0.115 4.115 20 C -0.176 4.176 21 C -0.350 4.350 22 S 0.351 5.649 23 C -0.357 4.357 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.149 0.851 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.157 0.843 39 H 0.198 0.802 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -20.089 4.171 12.559 24.056 hybrid contribution 2.221 0.215 -2.224 3.151 sum -17.868 4.387 10.335 21.102 Atomic orbital electron populations 1.21939 0.95488 1.01383 1.01737 1.21793 0.95597 0.98065 0.99413 1.19238 0.92096 0.91830 0.87814 0.98234 1.21543 0.92063 1.39219 1.04009 0.94588 1.25730 0.95762 0.94409 1.01861 1.70123 1.13504 1.44640 1.29898 0.86265 0.82251 0.77386 0.79364 1.20903 1.21426 1.14455 1.60644 1.05540 1.34545 1.29161 1.21882 0.92912 0.92437 0.96437 0.90073 1.22470 1.02055 0.98941 1.00256 1.21415 0.99906 0.96711 0.94300 1.20209 1.00337 0.97875 0.90484 1.19184 0.93078 1.02274 0.96977 1.20337 1.01783 1.03645 0.91810 1.25859 0.96587 1.09212 1.03308 1.84064 1.07843 1.70713 1.02273 1.25672 0.99879 1.10652 0.99508 0.92785 0.90517 0.93893 0.94826 0.93587 0.92717 0.85149 0.92977 0.94591 0.90775 0.90854 0.92707 0.91112 0.91077 0.84270 0.80194 0.80693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 8.75 71.98 0.63 -4.22 16 2 C -0.11 -4.62 4.78 30.59 0.15 -4.47 16 3 C 0.20 8.92 1.55 44.17 0.07 8.98 16 4 H 0.00 0.00 5.51 -2.39 -0.01 -0.01 16 5 C -0.53 -29.53 9.06 25.60 0.23 -29.30 16 6 H 0.04 2.22 7.72 -2.91 -0.02 2.20 16 7 C 0.02 1.19 5.32 84.66 0.45 1.64 16 8 N -0.94 -58.58 13.96 21.45 0.30 -58.28 16 9 Si 0.92 43.42 25.69 68.60 1.76 45.18 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.22 -9.43 5.36 99.48 0.53 -8.90 16 13 N -0.67 -25.07 5.35 -473.33 -2.53 -27.60 16 14 C 0.07 2.17 1.79 44.91 0.08 2.25 16 15 H 0.08 2.39 5.47 -2.39 -0.01 2.38 16 16 C -0.18 -5.17 9.14 71.98 0.66 -4.51 16 17 C -0.09 -2.08 4.87 30.59 0.15 -1.94 16 18 C -0.05 -1.20 4.68 29.85 0.14 -1.06 16 19 C -0.10 -2.34 5.05 -20.92 -0.11 -2.44 16 20 C -0.15 -3.24 9.98 21.22 0.21 -3.03 16 21 C -0.21 -4.06 11.23 66.72 0.75 -3.31 16 22 S 0.09 1.57 23.34 -56.49 -1.32 0.25 16 23 C -0.22 -4.41 10.98 66.72 0.73 -3.67 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.08 2.28 4.30 -2.39 -0.01 2.27 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.03 1.49 4.55 -2.38 -0.01 1.48 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.26 15.44 8.31 -92.71 -0.77 14.66 16 30 H 0.33 13.24 7.86 -89.69 -0.70 12.54 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.03 1.20 7.09 -2.39 -0.02 1.18 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 2.04 7.74 -2.39 -0.02 2.02 16 37 H 0.07 1.63 7.21 -2.39 -0.02 1.61 16 38 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -62.46 322.01 2.50 -59.96 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.14 Total: 25.57 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 4.14 Total: -45.09 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -2.23 Total: -85.88 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.76 Total: 45.18 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.32 Total: 0.25 kcal Total: -62.46 2.50 -59.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310030721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.265 kcal (2) G-P(sol) polarization free energy of solvation -62.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds