Wall clock time and date at job start Mon Mar 30 2020 00:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47133 * 2 1 4 4 H 1.08994 * 109.46734 * 54.33264 * 3 2 1 5 5 C 1.50697 * 109.47260 * 174.33346 * 3 2 1 6 6 H 1.08003 * 120.00185 * 119.99606 * 5 3 2 7 7 C 1.37878 * 119.99797 * 299.99917 * 5 3 2 8 8 N 1.31513 * 120.00327 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99990 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46668 * 89.99941 * 9 7 5 11 11 H 1.48490 * 109.47389 * 209.99864 * 9 7 5 12 12 H 1.48500 * 109.47057 * 330.00741 * 9 7 5 13 13 N 1.46906 * 109.46766 * 294.33327 * 3 2 1 14 14 C 1.46903 * 110.99269 * 159.84806 * 13 3 2 15 15 H 1.08998 * 109.47634 * 19.49844 * 14 13 3 16 16 C 1.52995 * 109.46959 * 259.48712 * 14 13 3 17 17 C 1.52999 * 109.47163 * 65.86513 * 16 14 13 18 18 C 1.53008 * 109.46451 * 139.49139 * 14 13 3 19 19 C 1.50701 * 109.47367 * 294.99709 * 18 14 13 20 20 C 1.33385 * 125.20217 * 89.71811 * 19 18 14 21 21 C 1.38428 * 114.91988 * 179.85880 * 20 19 18 22 22 C 1.33382 * 114.91934 * 0.43837 * 21 20 19 23 23 S 1.75881 * 125.20095 * 270.02859 * 19 18 14 24 24 H 1.08997 * 109.47328 * 55.90715 * 1 2 3 25 25 H 1.08997 * 109.47113 * 295.90378 * 1 2 3 26 26 H 1.09007 * 109.46973 * 175.90418 * 1 2 3 27 27 H 1.08999 * 109.47254 * 120.00083 * 2 1 3 28 28 H 1.09004 * 109.47101 * 240.00026 * 2 1 3 29 29 H 0.96996 * 119.99853 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99939 * 35.89740 * 13 3 2 31 31 H 1.08999 * 109.46829 * 185.86074 * 16 14 13 32 32 H 1.08997 * 109.47397 * 305.85875 * 16 14 13 33 33 H 1.09002 * 109.46787 * 300.46425 * 17 16 14 34 34 H 1.08999 * 109.47437 * 60.46138 * 17 16 14 35 35 H 1.09000 * 109.47392 * 180.46854 * 17 16 14 36 36 H 1.08999 * 109.47228 * 55.00011 * 18 14 13 37 37 H 1.09005 * 109.46792 * 174.99555 * 18 14 13 38 38 H 1.08002 * 122.53962 * 0.02562 * 20 19 18 39 39 H 1.07995 * 122.53703 * 180.19707 * 21 20 19 40 40 H 1.08001 * 125.20199 * 179.79693 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9847 0.8349 5 6 3.5404 1.4449 0.1403 6 1 4.1542 1.8864 -0.6309 7 6 4.1296 0.8833 1.2532 8 7 3.3822 0.3451 2.1920 9 14 5.9895 0.8855 1.4268 10 1 6.4195 2.1212 2.1292 11 1 6.4151 -0.3024 2.2095 12 1 6.6125 0.8399 0.0795 13 7 1.6651 2.0944 -1.2620 14 6 1.6963 3.5570 -1.1285 15 1 2.3057 3.8303 -0.2671 16 6 0.2724 4.0817 -0.9332 17 6 -0.2757 3.5833 0.4055 18 6 2.2973 4.1718 -2.3941 19 6 3.7392 3.7523 -2.5205 20 6 4.1693 2.6586 -3.1514 21 6 5.5420 2.4804 -3.1399 22 6 6.2259 3.4245 -2.4918 23 16 5.1117 4.6258 -1.8521 24 1 -0.3634 0.5760 -0.8510 25 1 -0.3633 0.4489 0.9244 26 1 -0.3633 -1.0251 -0.0734 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.7968 -0.0496 2.9751 30 1 0.7597 1.7792 -1.5768 31 1 0.2830 5.1716 -0.9383 32 1 -0.3620 3.7207 -1.7427 33 1 -0.2785 2.4933 0.4138 34 1 0.3540 3.9511 1.2156 35 1 -1.2931 3.9502 0.5408 36 1 1.7408 3.8267 -3.2654 37 1 2.2392 5.2586 -2.3329 38 1 3.4976 1.9660 -3.6368 39 1 6.0225 1.6385 -3.6161 40 1 7.2996 3.4481 -2.3778 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310037938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:54 Heat of formation + Delta-G solvation = 16.312454 kcal Electronic energy + Delta-G solvation = -19423.883441 eV Core-core repulsion = 16750.639993 eV Total energy + Delta-G solvation = -2673.243448 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.04564 -36.66935 -34.07844 -31.66720 -31.16072 -29.65092 -27.14199 -25.90833 -23.78349 -22.66607 -21.92699 -20.01025 -19.35413 -18.52707 -16.47609 -16.15950 -15.28110 -14.77306 -14.31049 -14.29196 -13.69966 -13.23508 -12.92578 -12.69383 -12.42648 -12.19763 -11.98154 -11.82962 -11.51965 -11.48616 -11.23863 -10.90142 -10.74858 -10.69522 -10.67593 -10.55013 -10.29175 -10.04435 -9.79295 -9.56839 -9.41256 -8.90985 -8.24909 -7.86384 -7.76958 -7.06934 -5.86163 -3.87044 1.71445 2.31149 2.65115 3.37699 3.44193 3.50359 3.52232 4.54658 5.18879 5.23027 5.43414 5.51521 5.59102 5.62926 5.69501 5.98710 6.03515 6.16193 6.18942 6.20020 6.20546 6.27492 6.30846 6.36245 6.43257 6.49772 6.70230 6.79894 6.86160 6.90744 7.04757 7.17113 7.23171 7.27730 7.62316 7.87407 8.08201 8.41477 8.50108 8.89723 9.24643 9.77641 11.19642 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.011051 C = 0.007096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.013653 B = 2533.054766 C = 3944.895712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.218 3.782 4 H 0.006 0.994 5 C -0.482 4.482 6 H 0.072 0.928 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.881 3.119 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.096 3.904 15 H 0.080 0.920 16 C -0.144 4.144 17 C -0.158 4.158 18 C -0.035 4.035 19 C -0.129 4.129 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.227 4.227 23 S 0.058 5.942 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.034 0.966 27 H 0.097 0.903 28 H 0.038 0.962 29 H 0.256 0.744 30 H 0.314 0.686 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 6.553 -8.237 10.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.111 3.889 4 H 0.024 0.976 5 C -0.521 4.521 6 H 0.090 0.910 7 C -0.145 4.145 8 N -0.542 5.542 9 Si 0.710 3.290 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.197 1.197 13 N -0.306 5.306 14 C -0.016 4.016 15 H 0.098 0.902 16 C -0.183 4.183 17 C -0.215 4.215 18 C -0.075 4.075 19 C -0.246 4.246 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.362 4.362 23 S 0.321 5.679 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.132 0.868 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.688 7.726 -7.493 10.894 hybrid contribution 0.212 -1.388 0.154 1.412 sum -1.476 6.338 -7.339 9.809 Atomic orbital electron populations 1.21919 0.99901 0.99281 0.99597 1.21742 0.90948 1.00749 1.02834 1.19229 0.95464 0.89732 0.84474 0.97597 1.21396 0.91384 1.35298 1.04025 0.90988 1.24892 0.97333 0.96079 0.96167 1.69870 1.34309 1.40312 1.09664 0.86736 0.87013 0.77138 0.78138 1.21022 1.21734 1.19674 1.60716 1.32268 1.02816 1.34753 1.21498 0.93390 0.90203 0.96500 0.90182 1.22191 0.98038 1.00357 0.97723 1.21925 0.99508 1.02754 0.97335 1.20216 0.89259 0.98395 0.99636 1.24072 0.97590 0.99817 1.03081 1.19853 0.94530 0.97246 1.02904 1.20103 0.94235 0.99366 1.01658 1.25278 1.02330 1.01130 1.07499 1.83920 0.98489 1.28000 1.57528 0.94526 0.93914 0.94697 0.88448 0.94322 0.93443 0.86753 0.92583 0.92459 0.91336 0.92666 0.93846 0.90749 0.92156 0.84634 0.85371 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.72 37.16 0.32 -2.49 16 2 C -0.12 -2.85 5.39 -26.73 -0.14 -2.99 16 3 C 0.22 5.10 1.20 -68.86 -0.08 5.01 16 4 H 0.01 0.17 6.07 -51.93 -0.32 -0.15 16 5 C -0.48 -12.76 8.35 -34.44 -0.29 -13.05 16 6 H 0.07 1.92 6.08 -52.48 -0.32 1.60 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.59 11.29 55.43 0.63 -24.96 16 9 Si 0.88 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.67 -13.07 5.44 -100.95 -0.55 -13.62 16 14 C 0.10 1.68 1.96 -67.71 -0.13 1.54 16 15 H 0.08 1.68 7.37 -51.93 -0.38 1.30 16 16 C -0.14 -2.12 5.26 -26.73 -0.14 -2.26 16 17 C -0.16 -2.50 8.79 37.16 0.33 -2.17 16 18 C -0.03 -0.54 5.39 -27.88 -0.15 -0.69 16 19 C -0.13 -2.25 4.86 -36.00 -0.17 -2.42 16 20 C -0.12 -2.07 8.94 -41.21 -0.37 -2.44 16 21 C -0.12 -2.13 10.18 -41.21 -0.42 -2.55 16 22 C -0.23 -3.90 11.23 29.04 0.33 -3.57 16 23 S 0.06 1.01 23.33 -107.50 -2.51 -1.50 16 24 H 0.04 0.62 6.22 -51.93 -0.32 0.29 16 25 H 0.04 0.81 7.49 -51.93 -0.39 0.42 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.10 2.56 5.94 -51.93 -0.31 2.25 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.31 5.67 5.83 -39.29 -0.23 5.44 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.77 8.01 -51.93 -0.42 0.36 16 33 H 0.07 1.19 4.37 -51.93 -0.23 0.96 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 40 H 0.15 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 323.33 15.07 4.87 4.87 Total: -1.00 -27.72 323.33 -9.87 -37.59 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.27 Total: 7.36 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -1.02 Total: -26.67 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.08 Total: -38.58 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.72 -9.87 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310037938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.899 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds