Wall clock time and date at job start Mon Mar 30 2020 00:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47133 * 2 1 4 4 H 1.08994 * 109.46734 * 54.33264 * 3 2 1 5 5 C 1.50697 * 109.47260 * 174.33346 * 3 2 1 6 6 H 1.08003 * 120.00185 * 119.99606 * 5 3 2 7 7 C 1.37878 * 119.99797 * 299.99917 * 5 3 2 8 8 N 1.31513 * 120.00327 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99990 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46668 * 89.99941 * 9 7 5 11 11 H 1.48490 * 109.47389 * 209.99864 * 9 7 5 12 12 H 1.48500 * 109.47057 * 330.00741 * 9 7 5 13 13 N 1.46906 * 109.46766 * 294.33327 * 3 2 1 14 14 C 1.46903 * 110.99269 * 159.84806 * 13 3 2 15 15 H 1.08998 * 109.47634 * 19.49844 * 14 13 3 16 16 C 1.52995 * 109.46959 * 259.48712 * 14 13 3 17 17 C 1.52999 * 109.47163 * 65.86513 * 16 14 13 18 18 C 1.53008 * 109.46451 * 139.49139 * 14 13 3 19 19 C 1.50701 * 109.47367 * 294.99709 * 18 14 13 20 20 C 1.33385 * 125.20217 * 89.71811 * 19 18 14 21 21 C 1.38428 * 114.91988 * 179.85880 * 20 19 18 22 22 C 1.33382 * 114.91934 * 0.43837 * 21 20 19 23 23 S 1.75881 * 125.20095 * 270.02859 * 19 18 14 24 24 H 1.08997 * 109.47328 * 55.90715 * 1 2 3 25 25 H 1.08997 * 109.47113 * 295.90378 * 1 2 3 26 26 H 1.09007 * 109.46973 * 175.90418 * 1 2 3 27 27 H 1.08999 * 109.47254 * 120.00083 * 2 1 3 28 28 H 1.09004 * 109.47101 * 240.00026 * 2 1 3 29 29 H 0.96996 * 119.99853 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99939 * 35.89740 * 13 3 2 31 31 H 1.08999 * 109.46829 * 185.86074 * 16 14 13 32 32 H 1.08997 * 109.47397 * 305.85875 * 16 14 13 33 33 H 1.09002 * 109.46787 * 300.46425 * 17 16 14 34 34 H 1.08999 * 109.47437 * 60.46138 * 17 16 14 35 35 H 1.09000 * 109.47392 * 180.46854 * 17 16 14 36 36 H 1.08999 * 109.47228 * 55.00011 * 18 14 13 37 37 H 1.09005 * 109.46792 * 174.99555 * 18 14 13 38 38 H 1.08002 * 122.53962 * 0.02562 * 20 19 18 39 39 H 1.07995 * 122.53703 * 180.19707 * 21 20 19 40 40 H 1.08001 * 125.20199 * 179.79693 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9847 0.8349 5 6 3.5404 1.4449 0.1403 6 1 4.1542 1.8864 -0.6309 7 6 4.1296 0.8833 1.2532 8 7 3.3822 0.3451 2.1920 9 14 5.9895 0.8855 1.4268 10 1 6.4195 2.1212 2.1292 11 1 6.4151 -0.3024 2.2095 12 1 6.6125 0.8399 0.0795 13 7 1.6651 2.0944 -1.2620 14 6 1.6963 3.5570 -1.1285 15 1 2.3057 3.8303 -0.2671 16 6 0.2724 4.0817 -0.9332 17 6 -0.2757 3.5833 0.4055 18 6 2.2973 4.1718 -2.3941 19 6 3.7392 3.7523 -2.5205 20 6 4.1693 2.6586 -3.1514 21 6 5.5420 2.4804 -3.1399 22 6 6.2259 3.4245 -2.4918 23 16 5.1117 4.6258 -1.8521 24 1 -0.3634 0.5760 -0.8510 25 1 -0.3633 0.4489 0.9244 26 1 -0.3633 -1.0251 -0.0734 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.7968 -0.0496 2.9751 30 1 0.7597 1.7792 -1.5768 31 1 0.2830 5.1716 -0.9383 32 1 -0.3620 3.7207 -1.7427 33 1 -0.2785 2.4933 0.4138 34 1 0.3540 3.9511 1.2156 35 1 -1.2931 3.9502 0.5408 36 1 1.7408 3.8267 -3.2654 37 1 2.2392 5.2586 -2.3329 38 1 3.4976 1.9660 -3.6368 39 1 6.0225 1.6385 -3.6161 40 1 7.2996 3.4481 -2.3778 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310037938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:53 Heat of formation + Delta-G solvation = 1.961678 kcal Electronic energy + Delta-G solvation = -19424.505737 eV Core-core repulsion = 16750.639993 eV Total energy + Delta-G solvation = -2673.865744 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.50294 -38.09224 -35.76793 -33.59224 -32.46077 -31.19176 -28.67623 -27.65771 -25.19087 -24.42348 -23.21346 -21.54859 -21.01808 -19.88230 -18.22680 -17.75168 -16.93238 -16.25690 -16.01519 -15.85341 -15.06917 -14.78026 -14.55964 -14.19005 -13.84282 -13.61862 -13.54699 -13.28166 -13.08742 -12.94583 -12.83041 -12.65464 -12.51665 -12.32098 -12.04425 -11.94518 -11.80620 -11.62363 -11.40275 -11.37583 -11.07840 -10.79446 -10.32048 -9.23819 -9.13382 -8.70483 -7.95525 -6.00937 0.36561 0.98261 1.30754 1.36677 1.39597 1.48877 2.16264 2.48826 3.31340 3.76535 3.93954 4.25149 4.33999 4.36804 4.41073 4.58917 4.65352 4.71610 4.73950 4.78231 4.90351 4.94300 4.96978 5.07583 5.11026 5.16451 5.27618 5.35400 5.37752 5.45212 5.51068 5.56104 5.69764 5.78718 5.89252 5.93063 6.07340 6.54944 6.69480 7.18099 7.22863 7.66779 9.07561 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.011051 C = 0.007096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.013653 B = 2533.054766 C = 3944.895712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.229 3.771 4 H -0.020 1.020 5 C -0.483 4.483 6 H 0.068 0.932 7 C 0.009 3.991 8 N -0.925 5.925 9 Si 0.925 3.075 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.098 3.902 15 H 0.039 0.961 16 C -0.136 4.136 17 C -0.157 4.157 18 C -0.031 4.031 19 C -0.137 4.137 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.236 4.236 23 S 0.047 5.953 24 H 0.059 0.941 25 H 0.036 0.964 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.031 0.969 29 H 0.252 0.748 30 H 0.326 0.674 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 7.277 -9.791 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C 0.121 3.879 4 H -0.003 1.003 5 C -0.522 4.522 6 H 0.086 0.914 7 C -0.188 4.188 8 N -0.567 5.567 9 Si 0.753 3.247 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.193 1.193 13 N -0.302 5.302 14 C -0.013 4.013 15 H 0.058 0.942 16 C -0.174 4.174 17 C -0.214 4.214 18 C -0.071 4.071 19 C -0.254 4.254 20 C -0.158 4.158 21 C -0.167 4.167 22 C -0.371 4.371 23 S 0.309 5.691 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.624 8.462 -9.065 12.675 hybrid contribution 0.505 -1.584 0.619 1.774 sum -2.120 6.878 -8.446 11.096 Atomic orbital electron populations 1.21762 0.96543 1.00775 1.00305 1.21562 0.93967 0.99776 1.00598 1.18917 0.93610 0.90061 0.85313 1.00251 1.21743 0.93276 1.33826 1.03349 0.91365 1.25468 1.00200 0.96606 0.96476 1.69996 1.35237 1.41469 1.10015 0.86038 0.83818 0.76818 0.78029 1.21145 1.21802 1.19259 1.60591 1.33067 1.04092 1.32404 1.21450 0.94855 0.89015 0.95985 0.94235 1.22113 0.96066 1.01592 0.97667 1.21893 1.00611 1.01568 0.97312 1.20254 0.88132 0.99548 0.99136 1.24378 0.98485 0.99786 1.02730 1.20021 0.94930 0.97536 1.03353 1.20377 0.94376 1.00027 1.01907 1.25594 1.03371 1.00918 1.07255 1.83922 0.99009 1.28402 1.57747 0.92177 0.94529 0.93052 0.92067 0.95058 0.93884 0.85539 0.90522 0.90138 0.93104 0.95072 0.91310 0.88789 0.90121 0.84360 0.83853 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.72 71.98 0.63 -4.30 16 2 C -0.12 -5.52 5.39 30.59 0.17 -5.35 16 3 C 0.23 10.74 1.20 44.17 0.05 10.79 16 4 H -0.02 -1.04 6.07 -2.39 -0.01 -1.06 16 5 C -0.48 -25.78 8.35 25.60 0.21 -25.57 16 6 H 0.07 3.64 6.08 -2.91 -0.02 3.63 16 7 C 0.01 0.50 5.29 84.66 0.45 0.94 16 8 N -0.92 -53.81 11.29 21.45 0.24 -53.56 16 9 Si 0.92 45.45 29.54 68.60 2.03 47.48 16 10 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 11 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.67 -25.07 5.44 -473.29 -2.57 -27.64 16 14 C 0.10 3.29 1.96 44.92 0.09 3.37 16 15 H 0.04 1.66 7.37 -2.39 -0.02 1.64 16 16 C -0.14 -3.60 5.26 30.59 0.16 -3.44 16 17 C -0.16 -4.70 8.79 71.98 0.63 -4.07 16 18 C -0.03 -0.88 5.39 29.85 0.16 -0.72 16 19 C -0.14 -4.58 4.86 24.59 0.12 -4.46 16 20 C -0.13 -4.44 8.94 21.22 0.19 -4.25 16 21 C -0.14 -4.56 10.18 21.22 0.22 -4.35 16 22 C -0.24 -7.82 11.23 66.72 0.75 -7.08 16 23 S 0.05 1.58 23.33 -56.49 -1.32 0.26 16 24 H 0.06 1.87 6.22 -2.39 -0.01 1.86 16 25 H 0.04 1.35 7.49 -2.39 -0.02 1.33 16 26 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.06 3.28 5.94 -2.39 -0.01 3.26 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.33 10.93 5.83 -89.69 -0.52 10.41 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 33 H 0.05 1.70 4.37 -2.39 -0.01 1.69 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.17 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -60.15 323.33 2.70 -57.45 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.49 Total: 24.48 kcal Atomic # 6 Polarization: -52.29 SS G_CDS: 3.82 Total: -48.47 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -2.33 Total: -81.21 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.32 Total: 0.26 kcal Total: -60.15 2.70 -57.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310037938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.413 kcal (2) G-P(sol) polarization free energy of solvation -60.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds