Wall clock time and date at job start Mon Mar 30 2020 00:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47199 * 2 1 4 4 H 1.08998 * 109.47680 * 54.26993 * 3 2 1 5 5 C 1.50701 * 109.47435 * 174.26884 * 3 2 1 6 6 H 1.07996 * 120.00416 * 119.99390 * 5 3 2 7 7 C 1.37882 * 119.99993 * 300.00259 * 5 3 2 8 8 N 1.31513 * 119.99725 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00304 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47226 * 59.99380 * 9 7 5 11 11 H 1.48501 * 109.46924 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46708 * 299.99303 * 9 7 5 13 13 N 1.46900 * 109.47385 * 294.26548 * 3 2 1 14 14 C 1.46905 * 110.99859 * 101.49993 * 13 3 2 15 15 H 1.08999 * 109.46929 * 325.59097 * 14 13 3 16 16 C 1.53003 * 109.47026 * 85.59344 * 14 13 3 17 17 C 1.52998 * 109.47073 * 294.39893 * 16 14 13 18 18 C 1.52998 * 109.47018 * 205.59401 * 14 13 3 19 19 C 1.50705 * 109.47445 * 65.00230 * 18 14 13 20 20 C 1.33392 * 125.20158 * 89.71180 * 19 18 14 21 21 C 1.38426 * 114.91631 * 179.86025 * 20 19 18 22 22 C 1.33393 * 114.92284 * 0.43788 * 21 20 19 23 23 S 1.75882 * 125.20214 * 270.02728 * 19 18 14 24 24 H 1.08993 * 109.47295 * 176.64760 * 1 2 3 25 25 H 1.09005 * 109.47067 * 296.65233 * 1 2 3 26 26 H 1.09001 * 109.47093 * 56.64519 * 1 2 3 27 27 H 1.09008 * 109.47344 * 119.99860 * 2 1 3 28 28 H 1.08995 * 109.47449 * 239.99891 * 2 1 3 29 29 H 0.97000 * 120.00395 * 180.02562 * 8 7 5 30 30 H 1.00898 * 111.00475 * 225.46084 * 13 3 2 31 31 H 1.09001 * 109.46704 * 54.39577 * 16 14 13 32 32 H 1.09000 * 109.46900 * 174.39420 * 16 14 13 33 33 H 1.09001 * 109.46910 * 186.42077 * 17 16 14 34 34 H 1.08995 * 109.47137 * 306.41693 * 17 16 14 35 35 H 1.09000 * 109.47113 * 66.41797 * 17 16 14 36 36 H 1.08998 * 109.47224 * 185.00366 * 18 14 13 37 37 H 1.08999 * 109.47491 * 305.00146 * 18 14 13 38 38 H 1.07995 * 122.53927 * 0.02562 * 20 19 18 39 39 H 1.07996 * 122.53972 * 180.20000 * 21 20 19 40 40 H 1.07999 * 125.20377 * 179.78909 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5953 1.9852 0.8342 5 6 3.5402 1.4449 0.1419 6 1 4.1549 1.8861 -0.6288 7 6 4.1283 0.8837 1.2556 8 7 3.3799 0.3467 2.1942 9 14 5.9880 0.8873 1.4319 10 1 6.4825 2.2875 1.4322 11 1 6.3654 0.2292 2.7085 12 1 6.5943 0.1484 0.2953 13 7 1.6666 2.0939 -1.2626 14 6 0.4989 2.9664 -1.0796 15 1 -0.1696 2.5280 -0.3387 16 6 0.9613 4.3431 -0.5983 17 6 1.5773 4.2153 0.7964 18 6 -0.2413 3.1135 -2.4106 19 6 -0.8028 1.7774 -2.8236 20 6 -2.0094 1.3148 -2.4925 21 6 -2.3094 0.0588 -2.9911 22 6 -1.3430 -0.5024 -3.7195 23 16 0.0355 0.5862 -3.8093 24 1 -0.3633 -1.0258 -0.0601 25 1 -0.3633 0.4610 0.9185 26 1 -0.3633 0.5650 -0.8584 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.7935 -0.0478 2.9779 30 1 2.4447 2.6074 -1.6486 31 1 1.7057 4.7384 -1.2894 32 1 0.1075 5.0195 -0.5579 33 1 1.8024 5.2080 1.1864 34 1 0.8724 3.7153 1.4605 35 1 2.4959 3.6318 0.7358 36 1 -1.0548 3.8299 -2.2966 37 1 0.4509 3.4683 -3.1741 38 1 -2.7007 1.8786 -1.8838 39 1 -3.2529 -0.4314 -2.8015 40 1 -1.3987 -1.4761 -4.1834 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310037939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:57 Heat of formation + Delta-G solvation = 17.215834 kcal Electronic energy + Delta-G solvation = -19333.988860 eV Core-core repulsion = 16660.784586 eV Total energy + Delta-G solvation = -2673.204274 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.25335 -36.85799 -33.92706 -31.53216 -31.32112 -29.57838 -27.50774 -25.79657 -23.82368 -22.58122 -21.96866 -20.17988 -19.25966 -18.68144 -16.78439 -16.26786 -15.21625 -15.01543 -14.44217 -14.16372 -13.59265 -13.20693 -12.99747 -12.64051 -12.42063 -12.19123 -12.05683 -11.88664 -11.59333 -11.33487 -11.02347 -10.98872 -10.79708 -10.68114 -10.64968 -10.52050 -10.22590 -10.16588 -9.99297 -9.52162 -9.31282 -8.71711 -8.37942 -8.08643 -7.92385 -7.06268 -5.98962 -4.06168 1.48334 2.16174 2.54952 3.16707 3.30563 3.35897 3.38391 4.41500 5.07893 5.22909 5.32838 5.40755 5.51941 5.59841 5.72851 5.81071 5.93493 5.98698 6.06928 6.28596 6.38657 6.41874 6.47281 6.52522 6.56306 6.61467 6.71413 6.77894 6.82376 6.93120 7.13290 7.24339 7.32912 7.58327 7.69345 7.81671 8.04446 8.36148 8.47766 8.75990 9.08340 9.59295 11.05011 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.006609 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.233631 B = 4235.798900 C = 4747.555029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 C 0.213 3.787 4 H 0.025 0.975 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.678 5.678 14 C 0.089 3.911 15 H 0.077 0.923 16 C -0.144 4.144 17 C -0.161 4.161 18 C -0.043 4.043 19 C -0.131 4.131 20 C -0.166 4.166 21 C -0.132 4.132 22 C -0.243 4.243 23 S 0.141 5.859 24 H 0.021 0.979 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 3.566 -8.667 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C 0.106 3.894 4 H 0.042 0.958 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.308 5.308 14 C -0.023 4.023 15 H 0.095 0.905 16 C -0.183 4.183 17 C -0.218 4.218 18 C -0.083 4.083 19 C -0.249 4.249 20 C -0.196 4.196 21 C -0.163 4.163 22 C -0.378 4.378 23 S 0.406 5.594 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.726 2.827 -9.402 12.493 hybrid contribution -0.017 0.550 1.499 1.597 sum -7.743 3.377 -7.903 11.568 Atomic orbital electron populations 1.22012 0.99752 0.98845 1.00480 1.21497 0.91475 0.99802 1.01335 1.19294 0.93840 0.91100 0.85164 0.95765 1.21398 0.91814 1.38177 1.04744 0.92653 1.24888 0.97702 0.95197 0.95866 1.69884 1.34682 1.38462 1.09269 0.86714 0.86185 0.78118 0.77273 1.20455 1.21413 1.20323 1.60796 1.07095 1.31952 1.30999 1.21694 0.94727 0.91584 0.94285 0.90488 1.22220 0.99860 0.98159 0.98076 1.22025 1.03511 1.00679 0.95589 1.20286 0.98901 0.90782 0.98296 1.24278 0.96744 1.00709 1.03143 1.19920 0.97459 0.97116 1.05069 1.19959 1.00099 0.95833 1.00414 1.25565 0.98277 1.04785 1.09221 1.84316 1.17158 1.09101 1.48790 0.96031 0.95309 0.91714 0.89835 0.94831 0.92969 0.85366 0.92510 0.93225 0.94495 0.93200 0.88965 0.90924 0.91254 0.85365 0.85510 0.82957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.96 37.15 0.33 -2.93 16 2 C -0.10 -2.47 5.45 -26.74 -0.15 -2.62 16 3 C 0.21 4.99 1.06 -68.86 -0.07 4.91 16 4 H 0.02 0.62 4.93 -51.93 -0.26 0.36 16 5 C -0.52 -13.53 7.56 -34.44 -0.26 -13.79 16 6 H 0.06 1.42 7.40 -52.49 -0.39 1.03 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 N -0.68 -13.21 5.51 -100.95 -0.56 -13.76 16 14 C 0.09 1.49 1.51 -67.71 -0.10 1.39 16 15 H 0.08 1.44 6.22 -51.93 -0.32 1.11 16 16 C -0.14 -2.24 5.40 -26.73 -0.14 -2.39 16 17 C -0.16 -2.90 8.39 37.16 0.31 -2.59 16 18 C -0.04 -0.61 5.39 -27.88 -0.15 -0.76 16 19 C -0.13 -1.98 3.96 -36.00 -0.14 -2.12 16 20 C -0.17 -2.40 8.88 -41.21 -0.37 -2.77 16 21 C -0.13 -1.83 10.18 -41.21 -0.42 -2.25 16 22 C -0.24 -3.42 11.23 29.04 0.33 -3.09 16 23 S 0.14 2.16 23.32 -107.50 -2.51 -0.34 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.25 3.27 -51.93 -0.17 1.08 16 27 H 0.08 2.27 5.94 -51.92 -0.31 1.96 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.33 6.47 7.56 -39.29 -0.30 6.18 16 31 H 0.06 0.85 8.03 -51.93 -0.42 0.44 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 35 H 0.09 1.97 5.44 -51.93 -0.28 1.68 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -26.80 320.05 -9.76 -36.56 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.20 Total: 8.19 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: -0.93 Total: -27.34 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.07 Total: -37.77 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.51 Total: -0.34 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.80 -9.76 -36.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310037939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.772 kcal (2) G-P(sol) polarization free energy of solvation -26.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds