Wall clock time and date at job start Mon Mar 30 2020 01:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99711 * 2 1 4 4 H 1.48506 * 109.46434 * 239.99740 * 3 2 1 5 5 H 1.48494 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47401 * 119.99999 * 3 2 1 7 7 C 1.38949 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99450 * 203.32047 * 7 2 1 9 9 N 1.37091 * 120.00751 * 23.32105 * 7 2 1 10 10 C 1.34774 * 120.00041 * 53.43430 * 9 7 2 11 11 O 1.21288 * 120.00443 * 180.02562 * 10 9 7 12 12 C 1.50703 * 119.99807 * 0.02562 * 10 9 7 13 13 C 1.52999 * 109.47336 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.75306 * 57.01663 * 13 12 10 15 15 C 1.55308 * 110.84961 * 180.71736 * 13 12 10 16 16 C 1.54949 * 100.94234 * 152.32046 * 15 13 12 17 17 O 1.43643 * 105.13832 * 323.56032 * 16 15 13 18 18 C 1.43236 * 109.97268 * 24.42222 * 17 16 15 19 19 C 1.46500 * 120.00283 * 233.44140 * 9 7 2 20 20 C 1.54889 * 110.75360 * 302.48828 * 19 9 7 21 21 C 1.54263 * 104.19636 * 156.26131 * 20 19 9 22 22 C 1.53870 * 106.59630 * 336.38224 * 21 20 19 23 23 C 1.54262 * 106.60112 * 0.02562 * 22 21 20 24 24 H 0.96996 * 120.00162 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47470 * 300.00358 * 12 10 9 26 26 H 1.09007 * 109.46901 * 60.00088 * 12 10 9 27 27 H 1.08993 * 111.12524 * 270.24220 * 15 13 12 28 28 H 1.09000 * 111.12349 * 34.40818 * 15 13 12 29 29 H 1.08993 * 110.31191 * 204.63555 * 16 15 13 30 30 H 1.09006 * 110.30145 * 82.46900 * 16 15 13 31 31 H 1.09004 * 109.83424 * 238.78242 * 18 17 16 32 32 H 1.09004 * 109.90693 * 117.85000 * 18 17 16 33 33 H 1.08999 * 110.81855 * 179.15085 * 19 9 7 34 34 H 1.09001 * 110.49063 * 37.57488 * 20 19 9 35 35 H 1.09010 * 110.48562 * 274.93806 * 20 19 9 36 36 H 1.08998 * 110.03904 * 95.67532 * 21 20 19 37 37 H 1.09006 * 110.02773 * 217.05796 * 21 20 19 38 38 H 1.09004 * 110.02820 * 119.29459 * 22 21 20 39 39 H 1.08999 * 110.03896 * 240.71716 * 22 21 20 40 40 H 1.08997 * 110.49032 * 142.28725 * 23 22 21 41 41 H 1.09009 * 110.48213 * 264.92548 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0227 -1.2414 0.3709 9 7 1.4075 -2.3424 -0.4689 10 6 0.8557 -2.3554 -1.6985 11 8 0.3232 -3.3629 -2.1137 12 6 0.9003 -1.1179 -2.5574 13 6 0.2094 -1.3991 -3.8933 14 1 -0.8162 -1.7326 -3.7350 15 6 0.2529 -0.1478 -4.8123 16 6 0.2099 -0.8098 -6.2126 17 8 0.9845 -2.0125 -6.0829 18 6 1.0038 -2.4369 -4.7150 19 6 1.3645 -3.5455 0.3659 20 6 2.7939 -3.9856 0.7685 21 6 2.5882 -4.8044 2.0596 22 6 1.2586 -4.3313 2.6728 23 6 0.7025 -3.2420 1.7327 24 1 -0.4850 0.8400 -0.0004 25 1 0.3873 -0.3026 -2.0472 26 1 1.9383 -0.8378 -2.7375 27 1 -0.6176 0.4881 -4.6515 28 1 1.1775 0.4117 -4.6705 29 1 0.6566 -0.1504 -6.9566 30 1 -0.8177 -1.0493 -6.4863 31 1 2.0322 -2.4833 -4.3567 32 1 0.5360 -3.4172 -4.6239 33 1 0.8412 -4.3534 -0.1455 34 1 3.4202 -3.1152 0.9644 35 1 3.2356 -4.6067 -0.0109 36 1 2.5332 -5.8670 1.8231 37 1 3.4075 -4.6186 2.7541 38 1 0.5584 -5.1645 2.7340 39 1 1.4321 -3.9154 3.6653 40 1 -0.3821 -3.3203 1.6574 41 1 0.9909 -2.2513 2.0842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330211333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:12 Heat of formation + Delta-G solvation = -96.752755 kcal Electronic energy + Delta-G solvation = -21741.522609 eV Core-core repulsion = 18620.623415 eV Total energy + Delta-G solvation = -3120.899194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.37100 -38.46751 -36.66299 -34.21311 -32.79507 -31.44805 -29.42917 -27.96885 -27.41589 -25.80140 -24.65227 -22.08154 -20.70707 -19.70878 -19.51805 -19.13263 -16.59456 -16.23117 -15.88550 -15.29408 -15.20134 -14.66411 -14.35332 -14.27301 -13.71837 -13.34333 -12.82639 -12.64391 -12.60456 -12.19004 -11.81365 -11.57254 -11.48484 -11.12675 -11.06320 -10.96587 -10.72352 -10.62346 -10.49896 -10.40039 -10.34769 -10.22763 -10.07458 -9.81879 -9.64264 -9.09560 -8.78565 -8.25129 -7.28445 -6.46427 -4.25978 3.07614 3.15998 3.18155 3.99350 4.14216 4.30798 4.72234 4.80468 5.02765 5.27471 5.33622 5.37096 5.39916 5.52828 5.68080 5.75167 5.92844 6.09956 6.11055 6.17938 6.18992 6.21039 6.26569 6.29422 6.37088 6.47233 6.51521 6.52178 6.54058 6.67513 6.70634 6.92316 6.97595 7.05132 7.10655 7.29230 7.40777 7.43063 7.97954 8.61383 8.88568 9.58973 10.02676 10.56413 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.007538 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.316938 B = 3713.747682 C = 4873.810887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.081 0.919 9 N -0.446 5.446 10 C 0.513 3.487 11 O -0.612 6.612 12 C -0.121 4.121 13 C -0.100 4.100 14 H 0.083 0.917 15 C -0.155 4.155 16 C 0.053 3.947 17 O -0.396 6.396 18 C 0.063 3.937 19 C 0.133 3.867 20 C -0.129 4.129 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.117 4.117 24 H 0.271 0.729 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -0.200 -1.685 2.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.153 4.153 3 Si 0.725 3.275 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.099 0.901 9 N -0.164 5.164 10 C 0.304 3.696 11 O -0.498 6.498 12 C -0.160 4.160 13 C -0.119 4.119 14 H 0.102 0.898 15 C -0.192 4.192 16 C -0.024 4.024 17 O -0.316 6.316 18 C -0.013 4.013 19 C 0.029 3.971 20 C -0.168 4.168 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.156 4.156 24 H 0.081 0.919 25 H 0.132 0.868 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.715 -0.684 -2.010 2.729 hybrid contribution 0.205 1.152 0.495 1.271 sum 1.920 0.468 -1.515 2.490 Atomic orbital electron populations 1.70064 1.06184 1.28042 1.44080 1.25543 0.94925 0.99923 0.94904 0.86449 0.79849 0.81725 0.79524 1.19369 1.20807 1.19610 1.19068 0.97205 0.84736 1.45665 0.90105 1.43248 1.52045 1.09971 1.11176 1.20295 0.79094 0.88367 0.81868 1.90483 1.49736 1.35512 1.74116 1.21684 1.01510 0.99716 0.93121 1.22467 1.00892 0.93482 0.95093 0.89826 1.23333 1.02940 0.98324 0.94635 1.23281 0.95515 0.86354 0.97213 1.88325 1.73020 1.42389 1.27866 1.23210 1.00141 0.98289 0.79645 1.21895 0.94201 0.89791 0.91242 1.22602 0.98755 0.99431 0.95990 1.22036 0.97347 0.99039 0.97252 1.22089 0.96554 0.98604 0.98805 1.22478 0.99072 0.99248 0.94787 0.91904 0.86819 0.90487 0.90283 0.90498 0.90489 0.92739 0.91792 0.90725 0.90076 0.90784 0.92811 0.92687 0.92583 0.92818 0.92613 0.92847 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.20 11.67 55.50 0.65 -20.55 16 2 C 0.05 1.28 3.44 -17.47 -0.06 1.22 16 3 Si 0.90 18.37 29.61 -169.99 -5.03 13.34 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.34 -8.10 7.03 -14.94 -0.10 -8.21 16 8 H 0.08 1.91 6.86 -52.48 -0.36 1.55 16 9 N -0.45 -10.72 2.47 -105.63 -0.26 -10.98 16 10 C 0.51 12.65 6.98 -10.99 -0.08 12.57 16 11 O -0.61 -16.07 14.27 5.55 0.08 -16.00 16 12 C -0.12 -2.63 3.51 -27.88 -0.10 -2.73 16 13 C -0.10 -1.93 2.59 -88.67 -0.23 -2.16 16 14 H 0.08 1.71 8.05 -51.93 -0.42 1.29 16 15 C -0.15 -2.42 6.62 -24.48 -0.16 -2.59 16 16 C 0.05 0.79 7.78 38.19 0.30 1.08 16 17 O -0.40 -7.24 11.36 -35.23 -0.40 -7.64 16 18 C 0.06 1.22 6.38 37.88 0.24 1.46 16 19 C 0.13 2.90 3.29 -65.95 -0.22 2.68 16 20 C -0.13 -2.40 6.37 -25.07 -0.16 -2.56 16 21 C -0.12 -1.85 6.80 -25.62 -0.17 -2.03 16 22 C -0.12 -1.99 6.80 -25.62 -0.17 -2.17 16 23 C -0.12 -2.39 6.36 -25.09 -0.16 -2.55 16 24 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 25 H 0.11 2.63 5.06 -51.93 -0.26 2.36 16 26 H 0.08 1.63 8.03 -51.92 -0.42 1.22 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.26 7.76 -51.93 -0.40 0.85 16 32 H 0.07 1.52 7.72 -51.93 -0.40 1.12 16 33 H 0.08 1.88 7.00 -51.93 -0.36 1.52 16 34 H 0.07 1.43 6.59 -51.93 -0.34 1.09 16 35 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.87 7.16 -51.92 -0.37 1.50 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -26.91 318.53 -7.94 -34.85 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.70 Total: 8.15 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.08 Total: -5.97 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.39 Total: -31.53 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.32 Total: -23.63 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.91 -7.94 -34.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330211333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.905 kcal (2) G-P(sol) polarization free energy of solvation -26.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds