Wall clock time and date at job start Mon Mar 30 2020 01:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 119.99711 * 2 1 4 4 H 1.48506 * 109.46434 * 239.99740 * 3 2 1 5 5 H 1.48494 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47401 * 119.99999 * 3 2 1 7 7 C 1.38949 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99450 * 203.32047 * 7 2 1 9 9 N 1.37091 * 120.00751 * 23.32105 * 7 2 1 10 10 C 1.34774 * 120.00041 * 53.43430 * 9 7 2 11 11 O 1.21288 * 120.00443 * 180.02562 * 10 9 7 12 12 C 1.50703 * 119.99807 * 0.02562 * 10 9 7 13 13 C 1.52999 * 109.47336 * 179.97438 * 12 10 9 14 14 H 1.09000 * 110.75306 * 57.01663 * 13 12 10 15 15 C 1.55308 * 110.84961 * 180.71736 * 13 12 10 16 16 C 1.54949 * 100.94234 * 152.32046 * 15 13 12 17 17 O 1.43643 * 105.13832 * 323.56032 * 16 15 13 18 18 C 1.43236 * 109.97268 * 24.42222 * 17 16 15 19 19 C 1.46500 * 120.00283 * 233.44140 * 9 7 2 20 20 C 1.54889 * 110.75360 * 302.48828 * 19 9 7 21 21 C 1.54263 * 104.19636 * 156.26131 * 20 19 9 22 22 C 1.53870 * 106.59630 * 336.38224 * 21 20 19 23 23 C 1.54262 * 106.60112 * 0.02562 * 22 21 20 24 24 H 0.96996 * 120.00162 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47470 * 300.00358 * 12 10 9 26 26 H 1.09007 * 109.46901 * 60.00088 * 12 10 9 27 27 H 1.08993 * 111.12524 * 270.24220 * 15 13 12 28 28 H 1.09000 * 111.12349 * 34.40818 * 15 13 12 29 29 H 1.08993 * 110.31191 * 204.63555 * 16 15 13 30 30 H 1.09006 * 110.30145 * 82.46900 * 16 15 13 31 31 H 1.09004 * 109.83424 * 238.78242 * 18 17 16 32 32 H 1.09004 * 109.90693 * 117.85000 * 18 17 16 33 33 H 1.08999 * 110.81855 * 179.15085 * 19 9 7 34 34 H 1.09001 * 110.49063 * 37.57488 * 20 19 9 35 35 H 1.09010 * 110.48562 * 274.93806 * 20 19 9 36 36 H 1.08998 * 110.03904 * 95.67532 * 21 20 19 37 37 H 1.09006 * 110.02773 * 217.05796 * 21 20 19 38 38 H 1.09004 * 110.02820 * 119.29459 * 22 21 20 39 39 H 1.08999 * 110.03896 * 240.71716 * 22 21 20 40 40 H 1.08997 * 110.49032 * 142.28725 * 23 22 21 41 41 H 1.09009 * 110.48213 * 264.92548 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0227 -1.2414 0.3709 9 7 1.4075 -2.3424 -0.4689 10 6 0.8557 -2.3554 -1.6985 11 8 0.3232 -3.3629 -2.1137 12 6 0.9003 -1.1179 -2.5574 13 6 0.2094 -1.3991 -3.8933 14 1 -0.8162 -1.7326 -3.7350 15 6 0.2529 -0.1478 -4.8123 16 6 0.2099 -0.8098 -6.2126 17 8 0.9845 -2.0125 -6.0829 18 6 1.0038 -2.4369 -4.7150 19 6 1.3645 -3.5455 0.3659 20 6 2.7939 -3.9856 0.7685 21 6 2.5882 -4.8044 2.0596 22 6 1.2586 -4.3313 2.6728 23 6 0.7025 -3.2420 1.7327 24 1 -0.4850 0.8400 -0.0004 25 1 0.3873 -0.3026 -2.0472 26 1 1.9383 -0.8378 -2.7375 27 1 -0.6176 0.4881 -4.6515 28 1 1.1775 0.4117 -4.6705 29 1 0.6566 -0.1504 -6.9566 30 1 -0.8177 -1.0493 -6.4863 31 1 2.0322 -2.4833 -4.3567 32 1 0.5360 -3.4172 -4.6239 33 1 0.8412 -4.3534 -0.1455 34 1 3.4202 -3.1152 0.9644 35 1 3.2356 -4.6067 -0.0109 36 1 2.5332 -5.8670 1.8231 37 1 3.4075 -4.6186 2.7541 38 1 0.5584 -5.1645 2.7340 39 1 1.4321 -3.9154 3.6653 40 1 -0.3821 -3.3203 1.6574 41 1 0.9909 -2.2513 2.0842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330211333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:12 Heat of formation + Delta-G solvation = -111.249683 kcal Electronic energy + Delta-G solvation = -21742.151243 eV Core-core repulsion = 18620.623415 eV Total energy + Delta-G solvation = -3121.527828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.04383 -40.02224 -38.31080 -36.04753 -34.34543 -33.26776 -30.81936 -29.47927 -28.99712 -27.50486 -26.43517 -23.42236 -22.27062 -21.37466 -21.01406 -20.82487 -18.35952 -17.79831 -17.54349 -16.98862 -16.71131 -16.24912 -15.97091 -15.78400 -15.37803 -14.95949 -14.33550 -14.16234 -14.06927 -13.92886 -13.48745 -13.21678 -13.07900 -12.81374 -12.62276 -12.47541 -12.21786 -12.06922 -12.01766 -11.99010 -11.88717 -11.73416 -11.66894 -11.34582 -11.17469 -10.63050 -10.52488 -10.13495 -9.15410 -8.30333 -6.16415 1.44715 1.50462 1.57060 2.17127 2.34720 2.89716 2.98008 3.07809 3.60734 3.85984 3.90668 3.92045 4.00808 4.14815 4.25907 4.35385 4.46685 4.57445 4.66386 4.72658 4.77483 4.78269 4.79911 4.86318 4.90776 4.91143 5.00116 5.02941 5.10833 5.15474 5.21675 5.29302 5.33168 5.42573 5.51288 5.55154 5.61559 6.03460 6.13472 6.73139 7.02607 7.69195 8.14952 8.73377 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.007538 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.316938 B = 3713.747682 C = 4873.810887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.026 3.974 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.352 4.352 8 H 0.084 0.916 9 N -0.451 5.451 10 C 0.493 3.507 11 O -0.640 6.640 12 C -0.110 4.110 13 C -0.101 4.101 14 H 0.065 0.935 15 C -0.146 4.146 16 C 0.049 3.951 17 O -0.408 6.408 18 C 0.073 3.927 19 C 0.118 3.882 20 C -0.122 4.122 21 C -0.110 4.110 22 C -0.114 4.114 23 C -0.111 4.111 24 H 0.273 0.727 25 H 0.103 0.897 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 0.696 -1.560 3.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.179 4.179 3 Si 0.782 3.218 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.479 4.479 8 H 0.101 0.899 9 N -0.169 5.169 10 C 0.284 3.716 11 O -0.529 6.529 12 C -0.150 4.150 13 C -0.121 4.121 14 H 0.083 0.917 15 C -0.183 4.183 16 C -0.026 4.026 17 O -0.328 6.328 18 C -0.003 4.003 19 C 0.014 3.986 20 C -0.160 4.160 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.150 4.150 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.859 0.210 -1.870 3.423 hybrid contribution -0.196 0.849 0.469 0.989 sum 2.663 1.059 -1.402 3.190 Atomic orbital electron populations 1.70153 1.07674 1.28883 1.44754 1.26179 0.95336 1.02439 0.93943 0.85528 0.78659 0.77817 0.79809 1.18449 1.20733 1.19211 1.19258 0.97421 0.85113 1.46099 0.89878 1.43489 1.51414 1.10745 1.11294 1.20899 0.79170 0.89043 0.82463 1.90448 1.51065 1.36638 1.74736 1.21575 1.01738 0.97906 0.93747 1.22398 0.99361 0.95682 0.94618 0.91694 1.23329 1.04208 0.96866 0.93914 1.23554 0.96291 0.85418 0.97384 1.88308 1.73751 1.44001 1.26731 1.22947 0.99350 0.97511 0.80520 1.22106 0.96530 0.88636 0.91346 1.22524 0.96126 0.99611 0.97769 1.22023 0.97560 0.99448 0.95785 1.22056 0.97080 0.97566 0.98496 1.22356 0.97818 0.99638 0.95165 0.91754 0.87917 0.90121 0.88462 0.89756 0.87326 0.91444 0.92556 0.92719 0.92305 0.91588 0.92612 0.90834 0.90219 0.91308 0.90761 0.94919 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.47 11.67 21.66 0.25 -44.22 16 2 C 0.03 1.23 3.44 84.93 0.29 1.52 16 3 Si 0.96 36.96 29.61 68.60 2.03 38.99 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.35 -16.97 7.03 84.04 0.59 -16.38 16 8 H 0.08 3.92 6.86 -2.91 -0.02 3.90 16 9 N -0.45 -22.34 2.47 -606.50 -1.50 -23.84 16 10 C 0.49 25.16 6.98 87.66 0.61 25.77 16 11 O -0.64 -35.21 14.27 -3.06 -0.04 -35.25 16 12 C -0.11 -4.87 3.51 29.85 0.10 -4.77 16 13 C -0.10 -3.93 2.59 -9.53 -0.02 -3.96 16 14 H 0.06 2.74 8.05 -2.39 -0.02 2.72 16 15 C -0.15 -4.30 6.62 32.05 0.21 -4.08 16 16 C 0.05 1.34 7.78 72.65 0.56 1.91 16 17 O -0.41 -14.47 11.36 -148.98 -1.69 -16.16 16 18 C 0.07 2.86 6.38 72.45 0.46 3.33 16 19 C 0.12 5.26 3.29 46.28 0.15 5.41 16 20 C -0.12 -4.45 6.37 31.67 0.20 -4.25 16 21 C -0.11 -3.16 6.80 31.32 0.21 -2.95 16 22 C -0.11 -3.51 6.80 31.32 0.21 -3.29 16 23 C -0.11 -4.61 6.36 31.66 0.20 -4.41 16 24 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 25 H 0.10 4.80 5.06 -2.39 -0.01 4.79 16 26 H 0.08 3.44 8.03 -2.38 -0.02 3.42 16 27 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 29 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.06 2.26 7.76 -2.39 -0.02 2.24 16 32 H 0.05 2.33 7.72 -2.38 -0.02 2.31 16 33 H 0.06 2.86 7.00 -2.39 -0.02 2.84 16 34 H 0.07 2.50 6.59 -2.39 -0.02 2.49 16 35 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 2.73 7.16 -2.38 -0.02 2.72 16 Total: -1.00 -59.30 318.53 3.85 -55.46 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 1.00 Total: 31.17 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 3.80 Total: -6.15 kcal Atomic # 7 Polarization: -66.82 SS G_CDS: -1.25 Total: -68.06 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -1.74 Total: -51.41 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -59.30 3.85 -55.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330211333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.794 kcal (2) G-P(sol) polarization free energy of solvation -59.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds