Wall clock time and date at job start Mon Mar 30 2020 00:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99600 * 2 1 4 4 H 1.48498 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47237 * 299.99714 * 3 2 1 6 6 H 1.48497 * 109.47400 * 59.99812 * 3 2 1 7 7 C 1.37878 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99730 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46993 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47287 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00188 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99837 * 355.14118 * 12 11 10 14 14 C 1.50699 * 119.99917 * 175.13615 * 12 11 10 15 15 C 1.52997 * 109.54414 * 292.99272 * 14 12 11 16 16 C 1.53000 * 117.50066 * 2.65127 * 15 14 12 17 17 C 1.53005 * 117.49859 * 293.98965 * 15 14 12 18 18 C 1.53181 * 109.54216 * 172.72510 * 14 12 11 19 19 C 1.53090 * 109.15933 * 297.11128 * 18 14 12 20 20 O 1.42894 * 109.42003 * 302.39077 * 19 18 14 21 21 C 1.42901 * 114.09775 * 61.16180 * 20 19 18 22 22 C 1.53092 * 109.41325 * 298.84215 * 21 20 19 23 23 H 0.96999 * 120.00438 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47240 * 60.00331 * 9 7 2 25 25 H 1.08997 * 109.47558 * 300.00286 * 9 7 2 26 26 H 1.09004 * 109.46764 * 299.99584 * 10 9 7 27 27 H 1.08990 * 109.47569 * 59.99860 * 10 9 7 28 28 H 0.97006 * 119.99807 * 359.97438 * 11 10 9 29 29 H 1.09003 * 115.55288 * 148.33164 * 15 14 12 30 30 H 1.09001 * 117.49607 * 0.02562 * 16 15 14 31 31 H 1.09000 * 117.50132 * 145.01981 * 16 15 14 32 32 H 1.08999 * 117.50267 * 214.97863 * 17 15 14 33 33 H 1.09000 * 117.49925 * 359.97438 * 17 15 14 34 34 H 1.08995 * 109.52411 * 57.01836 * 18 14 12 35 35 H 1.09001 * 109.52218 * 177.21148 * 18 14 12 36 36 H 1.09007 * 109.47807 * 182.40406 * 19 18 14 37 37 H 1.09002 * 109.48092 * 62.38037 * 19 18 14 38 38 H 1.08998 * 109.48360 * 178.86225 * 21 20 19 39 39 H 1.08996 * 109.49051 * 58.82706 * 21 20 19 40 40 H 1.09005 * 109.52416 * 297.70345 * 22 21 20 41 41 H 1.09001 * 109.57635 * 177.54755 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 7 1.5131 -4.9308 0.0033 12 6 2.1871 -6.0979 0.0037 13 8 3.3966 -6.0997 -0.0854 14 6 1.4377 -7.4007 0.1149 15 6 0.7938 -7.5043 1.4989 16 6 0.9576 -6.3132 2.4452 17 6 1.7276 -7.6102 2.7063 18 6 2.4074 -8.5687 -0.0900 19 6 2.9865 -8.4986 -1.5054 20 8 1.9207 -8.5267 -2.4567 21 6 1.0087 -7.4324 -2.3437 22 6 0.3500 -7.4596 -0.9620 23 1 -0.4851 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8721 -3.6050 -0.8874 27 1 2.8721 -3.6035 0.8925 28 1 0.5430 -4.9309 0.0033 29 1 -0.1463 -8.0543 1.5401 30 1 1.5236 -5.4556 2.0815 31 1 0.1252 -6.0797 3.1091 32 1 1.4016 -8.2294 3.5420 33 1 2.8006 -7.6065 2.5146 34 1 3.2158 -8.5029 0.6381 35 1 1.8751 -9.5110 0.0395 36 1 3.6447 -9.3515 -1.6714 37 1 3.5528 -7.5744 -1.6211 38 1 0.2418 -7.5173 -3.1137 39 1 1.5488 -6.4943 -2.4705 40 1 -0.2239 -8.3796 -0.8501 41 1 -0.3137 -6.6014 -0.8569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331492732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:17 Heat of formation + Delta-G solvation = -72.696081 kcal Electronic energy + Delta-G solvation = -21478.480885 eV Core-core repulsion = 18358.624866 eV Total energy + Delta-G solvation = -3119.856018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.07728 -38.07648 -36.94626 -35.00269 -33.12850 -32.81951 -31.09244 -29.58265 -26.13430 -24.77279 -23.77838 -22.42523 -21.90555 -21.09673 -20.88189 -18.99559 -16.92625 -16.54540 -16.19242 -15.93338 -15.51607 -15.19355 -14.77457 -14.57968 -14.43752 -13.80566 -13.60288 -13.32144 -12.92428 -12.43651 -12.36211 -12.14550 -11.89546 -11.53465 -11.25540 -11.22947 -11.07038 -11.02840 -10.65531 -10.56525 -10.35777 -10.34027 -10.01647 -9.78242 -9.50900 -9.39357 -9.08679 -8.55335 -8.37010 -6.12559 -4.15464 2.90444 3.26086 3.33821 3.38302 3.54715 3.72677 3.90037 4.37403 4.43605 4.63678 4.66974 4.90927 4.96062 5.05149 5.12377 5.17926 5.24766 5.28374 5.53182 5.55256 5.61891 5.67324 5.70391 5.82725 5.91102 5.96896 6.01001 6.12774 6.14357 6.18538 6.29919 6.32913 6.68787 6.87174 7.20630 7.47829 7.57230 7.85423 7.95671 8.24014 8.58318 8.90678 9.49755 10.98989 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.004689 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.606442 B = 5970.380232 C = 6363.075791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.719 5.719 12 C 0.518 3.482 13 O -0.547 6.547 14 C -0.050 4.050 15 C -0.145 4.145 16 C -0.186 4.186 17 C -0.176 4.176 18 C -0.124 4.124 19 C 0.050 3.950 20 O -0.385 6.385 21 C 0.057 3.943 22 C -0.142 4.142 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.398 0.602 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 -17.230 1.038 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C -0.002 4.002 11 N -0.369 5.369 12 C 0.303 3.697 13 O -0.425 6.425 14 C -0.053 4.053 15 C -0.163 4.163 16 C -0.223 4.223 17 C -0.213 4.213 18 C -0.162 4.162 19 C -0.026 4.026 20 O -0.304 6.304 21 C -0.020 4.020 22 C -0.180 4.180 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.233 0.767 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.140 -17.217 0.848 17.239 hybrid contribution -0.170 1.237 0.355 1.298 sum -0.310 -15.980 1.203 16.028 Atomic orbital electron populations 1.69958 1.06084 1.26790 1.50417 1.24985 0.94876 0.99397 0.94953 0.86473 0.80176 0.83376 0.77645 1.19599 1.20909 1.20922 1.21078 0.93243 0.90379 1.51297 0.92260 1.19317 0.94153 0.91101 0.97845 1.21730 0.96089 0.81618 1.00720 1.46464 1.10627 1.06434 1.73368 1.20294 0.87926 0.85354 0.76100 1.90637 1.14177 1.87607 1.50070 1.20469 0.95988 0.93963 0.94895 1.22193 1.00754 1.04242 0.89125 1.23447 1.03510 0.92966 1.02425 1.22976 0.98426 1.01072 0.98825 1.21984 0.98914 0.96702 0.98584 1.22788 0.89169 1.03301 0.87354 1.87877 1.39396 1.47196 1.55932 1.22598 0.92676 0.90265 0.96464 1.22270 0.97344 1.03859 0.94506 0.92882 0.95969 0.95925 0.92581 0.92671 0.76743 0.86945 0.87111 0.88472 0.88755 0.88609 0.90038 0.90729 0.89146 0.91052 0.88505 0.92912 0.89925 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.12 2.49 5.62 -4.04 -0.02 2.46 16 11 N -0.72 -12.03 3.65 -60.30 -0.22 -12.25 16 12 C 0.52 8.37 3.58 -10.99 -0.04 8.33 16 13 O -0.55 -10.62 14.14 5.56 0.08 -10.54 16 14 C -0.05 -0.62 0.53 -155.48 -0.08 -0.71 16 15 C -0.14 -1.61 5.25 -90.62 -0.48 -2.09 16 16 C -0.19 -2.35 9.38 -26.69 -0.25 -2.60 16 17 C -0.18 -1.99 9.61 -26.69 -0.26 -2.25 16 18 C -0.12 -1.50 4.27 -26.59 -0.11 -1.61 16 19 C 0.05 0.66 6.56 37.20 0.24 0.91 16 20 O -0.39 -5.30 10.77 -35.23 -0.38 -5.68 16 21 C 0.06 0.70 6.62 37.21 0.25 0.95 16 22 C -0.14 -1.57 4.76 -26.59 -0.13 -1.69 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.40 5.99 7.30 -40.82 -0.30 5.69 16 29 H 0.11 1.06 8.07 -51.93 -0.42 0.64 16 30 H 0.11 1.71 5.44 -51.93 -0.28 1.43 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.10 1.20 7.29 -51.93 -0.38 0.82 16 34 H 0.08 1.03 6.88 -51.93 -0.36 0.67 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.12 6.07 -51.93 -0.32 0.80 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.75 7.38 -51.93 -0.38 0.37 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.83 7.05 -51.93 -0.37 0.46 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -30.33 321.47 -7.96 -38.29 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.57 Total: 5.34 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.43 Total: -11.13 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.52 Total: -37.31 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.30 Total: -16.21 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.33 -7.96 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331492732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.410 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds