Wall clock time and date at job start Mon Mar 30 2020 00:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99600 * 2 1 4 4 H 1.48498 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47237 * 299.99714 * 3 2 1 6 6 H 1.48497 * 109.47400 * 59.99812 * 3 2 1 7 7 C 1.37878 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99730 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46993 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47287 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00188 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99837 * 355.14118 * 12 11 10 14 14 C 1.50699 * 119.99917 * 175.13615 * 12 11 10 15 15 C 1.52997 * 109.54414 * 292.99272 * 14 12 11 16 16 C 1.53000 * 117.50066 * 2.65127 * 15 14 12 17 17 C 1.53005 * 117.49859 * 293.98965 * 15 14 12 18 18 C 1.53181 * 109.54216 * 172.72510 * 14 12 11 19 19 C 1.53090 * 109.15933 * 297.11128 * 18 14 12 20 20 O 1.42894 * 109.42003 * 302.39077 * 19 18 14 21 21 C 1.42901 * 114.09775 * 61.16180 * 20 19 18 22 22 C 1.53092 * 109.41325 * 298.84215 * 21 20 19 23 23 H 0.96999 * 120.00438 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47240 * 60.00331 * 9 7 2 25 25 H 1.08997 * 109.47558 * 300.00286 * 9 7 2 26 26 H 1.09004 * 109.46764 * 299.99584 * 10 9 7 27 27 H 1.08990 * 109.47569 * 59.99860 * 10 9 7 28 28 H 0.97006 * 119.99807 * 359.97438 * 11 10 9 29 29 H 1.09003 * 115.55288 * 148.33164 * 15 14 12 30 30 H 1.09001 * 117.49607 * 0.02562 * 16 15 14 31 31 H 1.09000 * 117.50132 * 145.01981 * 16 15 14 32 32 H 1.08999 * 117.50267 * 214.97863 * 17 15 14 33 33 H 1.09000 * 117.49925 * 359.97438 * 17 15 14 34 34 H 1.08995 * 109.52411 * 57.01836 * 18 14 12 35 35 H 1.09001 * 109.52218 * 177.21148 * 18 14 12 36 36 H 1.09007 * 109.47807 * 182.40406 * 19 18 14 37 37 H 1.09002 * 109.48092 * 62.38037 * 19 18 14 38 38 H 1.08998 * 109.48360 * 178.86225 * 21 20 19 39 39 H 1.08996 * 109.49051 * 58.82706 * 21 20 19 40 40 H 1.09005 * 109.52416 * 297.70345 * 22 21 20 41 41 H 1.09001 * 109.57635 * 177.54755 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 7 1.5131 -4.9308 0.0033 12 6 2.1871 -6.0979 0.0037 13 8 3.3966 -6.0997 -0.0854 14 6 1.4377 -7.4007 0.1149 15 6 0.7938 -7.5043 1.4989 16 6 0.9576 -6.3132 2.4452 17 6 1.7276 -7.6102 2.7063 18 6 2.4074 -8.5687 -0.0900 19 6 2.9865 -8.4986 -1.5054 20 8 1.9207 -8.5267 -2.4567 21 6 1.0087 -7.4324 -2.3437 22 6 0.3500 -7.4596 -0.9620 23 1 -0.4851 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8721 -3.6050 -0.8874 27 1 2.8721 -3.6035 0.8925 28 1 0.5430 -4.9309 0.0033 29 1 -0.1463 -8.0543 1.5401 30 1 1.5236 -5.4556 2.0815 31 1 0.1252 -6.0797 3.1091 32 1 1.4016 -8.2294 3.5420 33 1 2.8006 -7.6065 2.5146 34 1 3.2158 -8.5029 0.6381 35 1 1.8751 -9.5110 0.0395 36 1 3.6447 -9.3515 -1.6714 37 1 3.5528 -7.5744 -1.6211 38 1 0.2418 -7.5173 -3.1137 39 1 1.5488 -6.4943 -2.4705 40 1 -0.2239 -8.3796 -0.8501 41 1 -0.3137 -6.6014 -0.8569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331492732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:17 Heat of formation + Delta-G solvation = -91.641854 kcal Electronic energy + Delta-G solvation = -21479.302435 eV Core-core repulsion = 18358.624866 eV Total energy + Delta-G solvation = -3120.677569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23266 -39.26292 -38.00465 -36.67422 -34.87015 -34.04835 -32.19405 -31.33918 -27.45506 -26.41618 -24.75684 -23.77572 -23.00832 -22.54001 -22.03895 -20.30663 -18.54192 -17.96907 -17.47667 -16.99097 -16.84030 -16.51813 -16.35713 -15.91577 -15.66242 -15.17513 -14.71976 -14.67657 -14.29131 -14.18059 -13.38809 -13.29548 -13.21268 -13.04886 -12.84816 -12.54977 -12.50788 -12.21618 -12.17481 -12.01105 -11.68538 -11.50396 -11.48940 -11.32817 -10.96399 -10.62373 -10.60965 -10.40098 -9.95319 -8.26042 -6.36389 1.39002 1.40387 1.52992 1.60206 2.20319 2.42595 2.76195 2.91370 3.08836 3.42565 3.63340 3.68996 3.91594 3.97688 4.06673 4.15979 4.23561 4.33526 4.43999 4.45533 4.55874 4.65818 4.67148 4.75220 4.77548 4.81356 4.87755 5.02806 5.03690 5.06143 5.15403 5.21537 5.24617 5.31782 5.47454 5.55690 5.76722 6.14284 6.19145 6.59145 6.76632 7.23941 7.33123 8.85863 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025251 B = 0.004689 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.606442 B = 5970.380232 C = 6363.075791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.143 3.857 11 N -0.713 5.713 12 C 0.518 3.482 13 O -0.583 6.583 14 C -0.046 4.046 15 C -0.130 4.130 16 C -0.204 4.204 17 C -0.170 4.170 18 C -0.120 4.120 19 C 0.049 3.951 20 O -0.392 6.392 21 C 0.051 3.949 22 C -0.138 4.138 23 H 0.266 0.734 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.408 0.592 29 H 0.146 0.854 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.038 0.962 38 H 0.120 0.880 39 H 0.023 0.977 40 H 0.112 0.888 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 -18.647 1.453 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.012 4.012 10 C 0.019 3.981 11 N -0.364 5.364 12 C 0.306 3.694 13 O -0.463 6.463 14 C -0.049 4.049 15 C -0.148 4.148 16 C -0.242 4.242 17 C -0.207 4.207 18 C -0.158 4.158 19 C -0.027 4.027 20 O -0.311 6.311 21 C -0.025 4.025 22 C -0.175 4.175 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.028 0.972 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.244 0.756 29 H 0.164 0.836 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.056 0.944 38 H 0.138 0.862 39 H 0.042 0.958 40 H 0.131 0.869 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.203 -18.652 1.263 18.734 hybrid contribution 0.186 1.668 0.205 1.691 sum -1.017 -16.984 1.468 17.078 Atomic orbital electron populations 1.70051 1.07457 1.27946 1.50968 1.25823 0.95765 1.02939 0.94370 0.85432 0.78915 0.78944 0.77972 1.19169 1.20172 1.20121 1.21470 0.93440 0.92020 1.51577 0.92622 1.19102 0.94108 0.91615 0.96348 1.21171 0.95027 0.82533 0.99379 1.46243 1.10938 1.05476 1.73700 1.21047 0.87670 0.86243 0.74468 1.90623 1.16071 1.88171 1.51463 1.20521 0.96302 0.91344 0.96711 1.22303 1.01685 1.03164 0.87670 1.23365 1.04225 0.92578 1.03989 1.23023 0.97484 1.00313 0.99861 1.21986 0.98801 0.97549 0.97431 1.22791 0.89276 1.02480 0.88201 1.87868 1.39562 1.47388 1.56309 1.22733 0.92730 0.88730 0.98350 1.22313 0.96792 1.05769 0.92656 0.92502 0.97395 0.97177 0.94095 0.93826 0.75574 0.83646 0.90518 0.87125 0.86147 0.90421 0.90900 0.87945 0.87233 0.94402 0.86217 0.95810 0.86949 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.79 13.29 21.45 0.28 -53.51 16 2 C 0.01 0.56 5.46 84.66 0.46 1.02 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.55 -30.55 9.11 25.60 0.23 -30.31 16 8 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.03 1.29 5.09 29.85 0.15 1.44 16 10 C 0.14 6.15 5.62 86.38 0.49 6.63 16 11 N -0.71 -24.48 3.65 -463.07 -1.69 -26.17 16 12 C 0.52 16.97 3.58 87.66 0.31 17.29 16 13 O -0.58 -23.54 14.14 -3.03 -0.04 -23.58 16 14 C -0.05 -1.06 0.53 -52.81 -0.03 -1.09 16 15 C -0.13 -2.52 5.25 -10.79 -0.06 -2.58 16 16 C -0.20 -4.90 9.38 30.62 0.29 -4.61 16 17 C -0.17 -3.49 9.61 30.62 0.29 -3.20 16 18 C -0.12 -2.68 4.27 30.69 0.13 -2.54 16 19 C 0.05 1.25 6.56 72.01 0.47 1.72 16 20 O -0.39 -10.20 10.77 -148.98 -1.60 -11.81 16 21 C 0.05 1.20 6.62 72.01 0.48 1.67 16 22 C -0.14 -2.66 4.76 30.68 0.15 -2.51 16 23 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 24 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 28 H 0.41 12.34 7.30 -92.70 -0.68 11.67 16 29 H 0.15 1.98 8.07 -2.39 -0.02 1.96 16 30 H 0.08 2.40 5.44 -2.39 -0.01 2.39 16 31 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 1.90 7.29 -2.39 -0.02 1.88 16 34 H 0.07 1.77 6.88 -2.39 -0.02 1.75 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.04 1.22 6.07 -2.39 -0.01 1.21 16 38 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.02 0.68 7.38 -2.39 -0.02 0.67 16 40 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.09 1.59 7.05 -2.39 -0.02 1.58 16 Total: -1.00 -66.66 321.47 2.69 -63.97 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.34 Total: 22.57 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 3.37 Total: -17.08 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.40 Total: -79.68 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.65 Total: -35.39 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -66.66 2.69 -63.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331492732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.667 kcal (2) G-P(sol) polarization free energy of solvation -66.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds