Wall clock time and date at job start Mon Mar 30 2020 01:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99831 * 2 1 4 4 H 1.48498 * 109.47174 * 269.99878 * 3 2 1 5 5 H 1.48504 * 109.46913 * 30.00128 * 3 2 1 6 6 H 1.48501 * 109.47062 * 149.99927 * 3 2 1 7 7 C 1.37875 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00042 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47004 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00413 * 0.27039 * 11 10 9 13 13 N 1.34784 * 119.99635 * 179.97438 * 11 10 9 14 14 C 1.47589 * 125.76728 * 359.69164 * 13 11 10 15 15 C 1.55187 * 104.73856 * 155.90858 * 14 13 11 16 16 C 1.55282 * 101.54665 * 36.99704 * 15 14 13 17 17 H 1.09006 * 110.75065 * 206.45808 * 16 15 14 18 18 O 1.42892 * 110.75186 * 83.09891 * 16 15 14 19 19 C 1.46436 * 125.76674 * 179.97438 * 13 11 10 20 20 C 1.53735 * 110.62466 * 60.70133 * 19 13 11 21 21 C 1.55015 * 104.06464 * 215.81291 * 20 19 13 22 22 C 1.54938 * 102.81946 * 37.47989 * 21 20 19 23 23 C 1.53349 * 110.83824 * 301.98453 * 19 13 11 24 24 H 0.97000 * 120.00459 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47392 * 59.99708 * 9 7 2 26 26 H 1.09002 * 109.47260 * 299.99953 * 9 7 2 27 27 H 1.09005 * 109.47089 * 59.99750 * 10 9 7 28 28 H 1.09002 * 109.46787 * 300.00092 * 10 9 7 29 29 H 1.09003 * 110.36194 * 274.83530 * 14 13 11 30 30 H 1.09001 * 110.36575 * 37.15573 * 14 13 11 31 31 H 1.08998 * 111.18066 * 278.87908 * 15 14 13 32 32 H 1.08998 * 110.89523 * 154.98756 * 15 14 13 33 33 H 0.96707 * 114.00157 * 66.64043 * 18 16 15 34 34 H 1.08994 * 110.50972 * 334.45783 * 20 19 13 35 35 H 1.08998 * 110.51112 * 97.16539 * 20 19 13 36 36 H 1.09005 * 110.74628 * 279.14910 * 21 20 19 37 37 H 1.08999 * 110.89942 * 155.88416 * 21 20 19 38 38 H 1.08999 * 110.48568 * 203.67952 * 22 21 20 39 39 H 1.08998 * 110.48292 * 81.03805 * 22 21 20 40 40 H 1.09000 * 110.07128 * 239.87083 * 23 19 13 41 41 H 1.08993 * 110.06952 * 1.40973 * 23 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5285 -2.6364 0.0022 12 8 6.1349 -1.5861 0.0080 13 7 6.2025 -3.8036 0.0028 14 6 5.5967 -5.1495 0.0089 15 6 6.6817 -6.0735 -0.6054 16 6 7.9821 -5.4543 -0.0252 17 1 8.8306 -5.6545 -0.6796 18 8 8.2315 -5.9442 1.2938 19 6 7.6594 -3.9508 0.0035 20 6 8.2684 -3.3042 1.2583 21 6 9.6094 -2.7064 0.7610 22 6 9.2509 -2.1882 -0.6544 23 6 8.2789 -3.2506 -1.2121 24 1 -0.4851 0.8400 -0.0004 25 1 3.8745 -0.6799 0.8911 26 1 3.8752 -0.6804 -0.8888 27 1 3.6585 -3.1502 -0.8893 28 1 3.6579 -3.1505 0.8907 29 1 5.3664 -5.4572 1.0289 30 1 4.6960 -5.1628 -0.6048 31 1 6.6751 -6.0190 -1.6939 32 1 6.5539 -7.1016 -0.2666 33 1 8.4400 -6.8879 1.3300 34 1 7.6165 -2.5171 1.6371 35 1 8.4471 -4.0562 2.0269 36 1 10.3789 -3.4765 0.7067 37 1 9.9310 -1.8860 1.4025 38 1 10.1445 -2.1255 -1.2754 39 1 8.7597 -1.2172 -0.5919 40 1 8.8229 -3.9718 -1.8221 41 1 7.5000 -2.7707 -1.8045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334450741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:45 Heat of formation + Delta-G solvation = -118.381314 kcal Electronic energy + Delta-G solvation = -21552.438684 eV Core-core repulsion = 18430.601606 eV Total energy + Delta-G solvation = -3121.837079 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.89980 -39.40450 -37.14495 -36.11796 -35.55793 -33.33806 -31.68497 -29.84434 -29.67578 -27.92245 -25.11586 -23.67153 -22.93885 -21.71760 -21.11014 -19.55789 -18.88253 -17.97746 -17.61007 -17.08394 -16.78732 -16.32894 -16.02435 -15.75513 -15.27864 -14.91168 -14.68333 -14.53716 -14.19676 -13.80175 -13.45138 -13.20587 -13.12284 -12.98657 -12.82858 -12.42068 -12.14359 -12.10810 -12.02880 -11.98902 -11.81355 -11.75652 -11.50925 -11.44751 -11.37903 -10.81293 -10.78750 -10.60109 -9.59049 -8.34776 -6.37709 1.29608 1.31484 1.47200 1.67495 2.00936 2.31948 3.00679 3.11031 3.47019 3.54309 3.80302 3.85806 3.98698 4.07810 4.14007 4.32219 4.37747 4.45131 4.46878 4.54497 4.59030 4.73047 4.78266 4.82723 4.85902 4.92653 5.01248 5.03815 5.11933 5.14299 5.21526 5.28956 5.38773 5.41993 5.47709 5.56675 5.67876 6.20278 6.53543 6.67934 7.02026 7.25984 7.27662 8.81021 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026990 B = 0.005174 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.175651 B = 5410.727006 C = 6089.589263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.017 3.983 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.010 3.990 10 C -0.110 4.110 11 C 0.525 3.475 12 O -0.572 6.572 13 N -0.613 5.613 14 C 0.089 3.911 15 C -0.152 4.152 16 C 0.113 3.887 17 H 0.106 0.894 18 O -0.567 6.567 19 C 0.156 3.844 20 C -0.125 4.125 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.119 4.119 24 H 0.268 0.732 25 H 0.006 0.994 26 H 0.008 0.992 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.399 0.601 34 H 0.028 0.972 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.099 0.901 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.616 -17.076 -1.661 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.028 4.028 10 C -0.149 4.149 11 C 0.315 3.685 12 O -0.451 6.451 13 N -0.346 5.346 14 C -0.033 4.033 15 C -0.190 4.190 16 C 0.053 3.947 17 H 0.123 0.877 18 O -0.377 6.377 19 C 0.071 3.929 20 C -0.163 4.163 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.157 4.157 24 H 0.077 0.923 25 H 0.025 0.975 26 H 0.027 0.973 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.250 0.750 34 H 0.047 0.953 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.055 0.945 40 H 0.118 0.882 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 21.602 -15.736 -1.505 26.768 hybrid contribution -0.479 0.737 0.007 0.879 sum 21.123 -14.999 -1.497 25.950 Atomic orbital electron populations 1.70011 1.07694 1.28150 1.52369 1.25759 0.95480 1.02696 0.94154 0.85851 0.79137 0.79635 0.79222 1.19188 1.20062 1.19008 1.21391 0.91066 0.93754 1.50537 0.93222 1.19182 0.94065 0.93438 0.96158 1.21447 0.89445 0.99867 1.04171 1.20805 0.90505 0.82285 0.74916 1.90622 1.71056 1.32290 1.51157 1.48628 1.06909 1.06132 1.72951 1.22657 0.98059 0.80773 1.01811 1.23573 0.93474 1.00103 1.01813 1.22625 0.97400 0.89853 0.84789 0.87674 1.86500 1.92754 1.31153 1.27271 1.21415 0.79915 0.95865 0.95699 1.22487 0.96705 0.99139 0.98005 1.22419 0.96539 1.00246 0.95680 1.22307 0.98722 0.97756 0.97016 1.22384 0.98425 0.98433 0.96440 0.92275 0.97532 0.97332 0.88439 0.89022 0.91017 0.89900 0.88729 0.86384 0.74983 0.95263 0.89169 0.89054 0.92299 0.89599 0.94519 0.88220 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.92 13.96 21.45 0.30 -59.62 16 2 C 0.02 1.04 5.47 84.66 0.46 1.50 16 3 Si 0.94 48.10 27.47 68.60 1.88 49.99 16 4 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.27 -13.75 6.54 99.48 0.65 -13.10 16 7 C -0.53 -31.57 9.66 25.60 0.25 -31.33 16 8 H 0.05 3.11 7.99 -2.91 -0.02 3.08 16 9 C 0.01 0.50 3.33 29.85 0.10 0.60 16 10 C -0.11 -4.54 4.65 29.85 0.14 -4.40 16 11 C 0.52 20.67 6.93 87.65 0.61 21.28 16 12 O -0.57 -26.73 14.34 -3.01 -0.04 -26.77 16 13 N -0.61 -18.08 2.82 -764.58 -2.16 -20.23 16 14 C 0.09 1.86 6.71 86.92 0.58 2.45 16 15 C -0.15 -1.85 6.83 32.13 0.22 -1.63 16 16 C 0.11 1.62 3.70 31.65 0.12 1.74 16 17 H 0.11 0.97 7.32 -2.38 -0.02 0.96 16 18 O -0.57 -7.82 11.24 -148.98 -1.67 -9.49 16 19 C 0.16 3.81 0.71 4.25 0.00 3.81 16 20 C -0.13 -3.49 5.74 31.53 0.18 -3.31 16 21 C -0.11 -2.55 6.91 31.95 0.22 -2.33 16 22 C -0.12 -2.99 6.84 31.74 0.22 -2.77 16 23 C -0.12 -2.86 5.61 31.19 0.18 -2.68 16 24 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 25 H 0.01 0.35 7.15 -2.39 -0.02 0.33 16 26 H 0.01 0.45 7.53 -2.39 -0.02 0.43 16 27 H 0.10 3.70 7.87 -2.38 -0.02 3.68 16 28 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.69 7.50 -2.39 -0.02 1.67 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.40 1.40 9.12 -74.05 -0.68 0.72 16 34 H 0.03 1.07 6.71 -2.39 -0.02 1.05 16 35 H 0.09 2.38 6.09 -2.39 -0.01 2.36 16 36 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.04 1.18 8.13 -2.39 -0.02 1.16 16 40 H 0.10 1.64 7.21 -2.39 -0.02 1.62 16 41 H 0.04 1.29 7.23 -2.39 -0.02 1.27 16 Total: -1.00 -78.58 318.86 1.87 -76.71 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 0.29 Total: 6.48 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 3.27 Total: -17.07 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -1.86 Total: -79.85 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.72 Total: -36.26 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.88 Total: 49.99 kcal Total: -78.58 1.87 -76.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334450741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.667 kcal (2) G-P(sol) polarization free energy of solvation -78.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds