Wall clock time and date at job start Mon Mar 30 2020 01:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 120.00279 * 2 1 4 4 H 1.48496 * 109.46890 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46667 * 299.99388 * 3 2 1 6 6 H 1.48497 * 109.46919 * 59.99256 * 3 2 1 7 7 C 1.40058 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99738 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99784 * 0.02562 * 7 2 1 10 10 O 1.21690 * 120.00261 * 359.97438 * 9 7 2 11 11 N 1.34782 * 119.99729 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99836 * 179.97438 * 11 9 7 13 13 H 1.09000 * 109.61806 * 34.76882 * 12 11 9 14 14 C 1.53177 * 109.54387 * 274.54648 * 12 11 9 15 15 C 1.53095 * 109.15074 * 183.13081 * 14 12 11 16 16 O 1.42900 * 109.43123 * 57.61145 * 15 14 12 17 17 C 1.42885 * 114.11941 * 298.88775 * 16 15 14 18 18 C 1.52984 * 109.51733 * 301.12341 * 17 16 15 19 19 C 1.52995 * 109.51223 * 299.75333 * 18 17 16 20 20 C 1.53002 * 109.47300 * 300.02586 * 19 18 17 21 21 C 1.53006 * 109.43909 * 60.04846 * 20 19 18 22 22 C 1.52981 * 109.52614 * 181.01755 * 17 16 15 23 23 C 1.53099 * 109.43610 * 61.08162 * 17 16 15 24 24 H 0.97003 * 119.99869 * 0.02562 * 1 2 3 25 25 H 0.96996 * 119.99800 * 359.97438 * 11 9 7 26 26 H 1.09005 * 109.52156 * 303.02894 * 14 12 11 27 27 H 1.08996 * 109.52736 * 63.22418 * 14 12 11 28 28 H 1.09000 * 109.48070 * 177.59856 * 15 14 12 29 29 H 1.09000 * 109.48019 * 297.62501 * 15 14 12 30 30 H 1.09003 * 109.45902 * 179.74683 * 18 17 16 31 31 H 1.08998 * 109.46436 * 59.77757 * 18 17 16 32 32 H 1.08999 * 109.47231 * 180.02562 * 19 18 17 33 33 H 1.09005 * 109.46732 * 60.02882 * 19 18 17 34 34 H 1.09002 * 109.47794 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47814 * 300.05811 * 20 19 18 36 36 H 1.08995 * 109.47064 * 59.95037 * 21 20 19 37 37 H 1.09007 * 109.47093 * 179.97438 * 21 20 19 38 38 H 1.09010 * 109.46288 * 180.24927 * 22 17 16 39 39 H 1.08996 * 109.46799 * 300.23131 * 22 17 16 40 40 H 1.09001 * 109.51721 * 62.34272 * 23 17 16 41 41 H 1.08998 * 109.51995 * 182.46010 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3462 0.0006 5 1 1.8821 2.3963 -1.2126 6 1 1.8819 2.3964 1.2124 7 6 2.0069 -1.2130 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6478 0.0005 12 6 1.2163 -4.9165 0.0011 13 1 0.3027 -4.8118 -0.5841 14 6 0.8615 -5.3027 1.4403 15 6 0.1659 -6.6665 1.4374 16 8 1.0217 -7.6354 0.8286 17 6 1.3501 -7.3511 -0.5327 18 6 0.0669 -7.2686 -1.3615 19 6 -0.6741 -8.6052 -1.2906 20 6 0.2212 -9.7148 -1.8458 21 6 1.5032 -9.7984 -1.0148 22 6 2.2448 -8.4621 -1.0855 23 6 2.0927 -6.0145 -0.6091 24 1 -0.4850 0.8401 -0.0004 25 1 2.9188 -3.6478 0.0002 26 1 1.7719 -5.3594 2.0372 27 1 0.1929 -4.5536 1.8643 28 1 -0.0509 -6.9662 2.4627 29 1 -0.7648 -6.5986 0.8740 30 1 0.3183 -7.0472 -2.3988 31 1 -0.5708 -6.4781 -0.9659 32 1 -1.5880 -8.5458 -1.8817 33 1 -0.9260 -8.8264 -0.2534 34 1 -0.3069 -10.6671 -1.7958 35 1 0.4740 -9.4932 -2.8826 36 1 1.2502 -10.0190 0.0222 37 1 2.1412 -10.5891 -1.4097 38 1 2.4983 -8.2419 -2.1227 39 1 3.1579 -8.5217 -0.4933 40 1 3.0278 -6.0851 -0.0534 41 1 2.3054 -5.7751 -1.6510 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334494446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:12 Heat of formation + Delta-G solvation = -113.550405 kcal Electronic energy + Delta-G solvation = -21509.187798 eV Core-core repulsion = 18387.560203 eV Total energy + Delta-G solvation = -3121.627595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40844 -37.43202 -36.12610 -34.02527 -32.40321 -31.56609 -30.84833 -30.24244 -27.08573 -25.96862 -23.39701 -22.91385 -21.99537 -20.20033 -19.40688 -18.99294 -17.17582 -16.18933 -15.68171 -15.41724 -14.88147 -14.67045 -14.41729 -14.16955 -13.79830 -13.51919 -13.23267 -12.90914 -12.43592 -12.23013 -12.21537 -12.12419 -11.86744 -11.41312 -11.17921 -11.10469 -11.04454 -10.91369 -10.60133 -10.52139 -10.47575 -10.30934 -10.25349 -10.18863 -9.51168 -9.17908 -8.86226 -7.60011 -7.49431 -6.18733 -4.64192 3.12418 3.20731 3.25168 3.93931 4.10142 4.57045 4.60523 4.74680 4.79482 4.92404 5.14938 5.16928 5.29792 5.33644 5.41234 5.53232 5.60956 5.62093 5.66442 5.73841 5.76797 5.81803 5.87620 5.97704 6.02741 6.03075 6.16464 6.22477 6.23879 6.26280 6.35175 6.40445 6.50856 6.66088 6.83104 7.43281 7.51916 7.94042 8.12193 8.34161 9.02635 9.54882 10.60044 10.78959 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041241 B = 0.004266 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.780921 B = 6562.155640 C = 6632.316443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.157 3.843 13 H 0.077 0.923 14 C -0.163 4.163 15 C 0.062 3.938 16 O -0.372 6.372 17 C 0.127 3.873 18 C -0.149 4.149 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.102 4.102 23 C -0.148 4.148 24 H 0.267 0.733 25 H 0.379 0.621 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 -16.292 -1.799 16.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.050 3.950 13 H 0.095 0.905 14 C -0.203 4.203 15 C -0.015 4.015 16 O -0.291 6.291 17 C 0.087 3.913 18 C -0.186 4.186 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.140 4.140 23 C -0.187 4.187 24 H 0.078 0.922 25 H 0.210 0.790 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.963 -16.327 -1.714 16.534 hybrid contribution 0.839 1.214 -0.067 1.477 sum 2.802 -15.113 -1.781 15.474 Atomic orbital electron populations 1.70030 1.07039 1.27093 1.35534 1.25702 0.94600 1.00259 0.92604 0.86337 0.80513 0.81829 0.78202 1.18799 1.20174 1.20176 1.20938 0.93604 0.89475 1.54294 0.91468 1.18224 0.87233 0.82478 0.76162 1.90588 1.14050 1.86838 1.54909 1.46193 1.08403 1.04681 1.82309 1.20494 0.95804 0.84309 0.94373 0.90499 1.22625 1.01492 0.96888 0.99264 1.22565 0.92825 0.88494 0.97642 1.87870 1.68415 1.47959 1.24895 1.21325 0.93752 0.93690 0.82512 1.22194 0.97479 0.98180 1.00786 1.21450 0.97782 0.94448 1.01556 1.21529 0.96336 0.98410 0.99248 1.21458 0.96254 0.96543 1.01022 1.21513 0.97882 0.93926 1.00658 1.22476 0.99568 0.94709 1.01913 0.92213 0.78970 0.91813 0.90390 0.89423 0.93008 0.91119 0.90738 0.92344 0.91508 0.92384 0.92333 0.91143 0.92467 0.90881 0.91367 0.91211 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.06 11.83 55.55 0.66 -22.40 16 2 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 3 Si 0.91 20.20 29.56 -169.99 -5.02 15.17 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.55 -15.47 9.54 -35.63 -0.34 -15.81 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 9 C 0.56 15.74 7.72 -12.99 -0.10 15.64 16 10 O -0.58 -18.62 14.68 5.20 0.08 -18.55 16 11 N -0.76 -17.07 5.08 -55.04 -0.28 -17.35 16 12 C 0.16 3.00 2.23 -67.75 -0.15 2.85 16 13 H 0.08 1.67 6.06 -51.93 -0.31 1.36 16 14 C -0.16 -2.93 5.72 -26.59 -0.15 -3.09 16 15 C 0.06 0.92 6.51 37.21 0.24 1.16 16 16 O -0.37 -5.42 8.92 -35.23 -0.31 -5.74 16 17 C 0.13 1.71 0.68 -90.59 -0.06 1.65 16 18 C -0.15 -1.97 4.03 -26.74 -0.11 -2.07 16 19 C -0.11 -1.31 5.78 -26.73 -0.15 -1.46 16 20 C -0.12 -1.17 5.93 -26.73 -0.16 -1.32 16 21 C -0.12 -1.18 5.78 -26.73 -0.15 -1.33 16 22 C -0.10 -1.15 4.94 -26.74 -0.13 -1.28 16 23 C -0.15 -2.25 4.39 -26.59 -0.12 -2.36 16 24 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 25 H 0.38 7.57 8.59 -40.82 -0.35 7.22 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.77 6.35 -51.93 -0.33 0.44 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.12 4.98 -51.93 -0.26 0.87 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.80 7.69 -51.93 -0.40 0.40 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.79 7.69 -51.93 -0.40 0.39 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -33.00 315.34 -8.29 -41.28 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.67 Total: 7.90 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.48 Total: -5.07 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.38 Total: -39.75 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.24 Total: -24.28 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.00 -8.29 -41.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334494446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.267 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds